HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNN TITLE REF6 ZnF2-4-NAC004-mC1 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A, B, N, G; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.60 ANGSTORMS DBREF 6JNN A 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 A 28 ARG ASN ILE CYS PRO ILE LYS GLY CYS GLY LYS ASN PHE SEQRES 2 A 28 PHE SER HIS LYS TYR LEU VAL GLN HIS GLN ARG VAL HIS SEQRES 3 A 28 SER ASP ATOM 1 N ARG A 6 72.960 1.508 -9.030 1.00 52.28 ATOM 2 CA ARG A 6 73.072 2.939 -9.166 1.00 54.90 ATOM 3 C ARG A 6 71.688 3.560 -9.254 1.00 55.21 ATOM 4 O ARG A 6 70.714 2.859 -9.279 1.00 52.71 ATOM 5 CB ARG A 6 73.909 3.264 -10.386 1.00 30.00 ATOM 6 CG ARG A 6 74.427 2.056 -11.150 1.00 30.00 ATOM 7 CD ARG A 6 75.748 2.326 -11.839 1.00 30.00 ATOM 8 NE ARG A 6 76.857 1.654 -11.164 1.00 30.00 ATOM 9 CZ ARG A 6 78.111 1.613 -11.625 1.00 30.00 ATOM 10 NH1 ARG A 6 78.403 2.200 -12.773 1.00 30.00 ATOM 11 NH2 ARG A 6 79.079 0.990 -10.943 1.00 30.00 ATOM 12 N ASN A 7 71.626 4.886 -9.316 1.00 53.96 ATOM 13 CA ASN A 7 70.378 5.670 -9.352 1.00 45.63 ATOM 14 C ASN A 7 70.047 6.150 -10.762 1.00 43.75 ATOM 15 O ASN A 7 70.779 6.967 -11.303 1.00 39.19 ATOM 16 CB ASN A 7 70.494 6.895 -8.454 1.00 45.18 ATOM 17 CG ASN A 7 70.943 6.551 -7.064 1.00 44.68 ATOM 18 OD1 ASN A 7 70.159 6.038 -6.247 1.00 48.08 ATOM 19 ND2 ASN A 7 72.220 6.810 -6.791 1.00 43.92 ATOM 20 N ILE A 8 68.903 5.709 -11.284 1.00 42.96 ATOM 21 CA ILE A 8 68.585 5.938 -12.689 1.00 43.72 ATOM 22 C ILE A 8 67.171 6.475 -12.841 1.00 44.16 ATOM 23 O ILE A 8 66.225 5.946 -12.216 1.00 50.14 ATOM 24 CB ILE A 8 68.773 4.648 -13.518 1.00 41.80 ATOM 25 CG1 ILE A 8 70.249 4.223 -13.547 1.00 39.31 ATOM 26 CG2 ILE A 8 68.258 4.845 -14.943 1.00 42.62 ATOM 27 CD1 ILE A 8 71.117 5.001 -14.498 1.00 41.34 ATOM 28 N CYS A 9 67.044 7.522 -13.666 1.00 44.84 ATOM 29 CA CYS A 9 65.743 8.128 -13.950 1.00 44.73 ATOM 30 C CYS A 9 64.841 7.144 -14.709 1.00 45.75 ATOM 31 O CYS A 9 65.249 6.595 -15.723 1.00 49.70 ATOM 32 CB CYS A 9 65.877 9.422 -14.740 1.00 40.00 ATOM 33 SG CYS A 9 64.323 10.269 -15.033 1.00 35.19 ATOM 34 N PRO A 10 63.625 6.892 -14.179 1.00 44.94 ATOM 35 CA PRO A 10 62.704 6.005 -14.885 1.00 43.47 ATOM 36 C PRO A 10 62.099 6.584 -16.152 1.00 45.92 ATOM 37 O PRO A 10 61.548 5.787 -16.929 1.00 51.20 ATOM 38 CB PRO A 10 61.639 5.688 -13.853 1.00 48.59 ATOM 39 CG PRO A 10 61.680 6.836 -12.921 1.00 53.10 ATOM 40 CD PRO A 10 63.115 7.288 -12.861 1.00 49.07 ATOM 41 N ILE A 11 62.236 7.892 -16.414 1.00 45.52 ATOM 42 CA ILE A 11 61.595 8.458 -17.612 1.00 42.90 ATOM 43 C ILE A 11 62.264 7.997 -18.879 1.00 46.03 ATOM 44 O ILE A 11 63.420 8.339 -19.129 1.00 51.29 ATOM 45 CB ILE A 11 61.509 9.987 -17.538 1.00 42.65 ATOM 46 CG1 ILE A 11 60.714 10.413 -16.282 1.00 40.07 ATOM 47 CG2 ILE A 11 60.997 10.598 -18.843 1.00 35.84 ATOM 48 CD1 ILE A 11 59.202 10.554 -16.438 1.00 33.90 ATOM 49 N LYS A 12 61.508 7.237 -19.657 1.00 45.20 ATOM 50 CA LYS A 12 62.001 6.677 -20.908 1.00 39.39 ATOM 51 C LYS A 12 62.462 7.816 -21.820 1.00 36.15 ATOM 52 O LYS A 12 61.642 8.581 -22.351 1.00 38.16 ATOM 53 CB LYS A 12 60.922 5.826 -21.555 1.00 40.66 ATOM 54 N GLY A 13 63.763 7.891 -22.059 1.00 35.65 ATOM 55 CA GLY A 13 64.311 8.973 -22.888 1.00 32.08 ATOM 56 C GLY A 13 65.474 9.703 -22.242 1.00 31.67 ATOM 57 O GLY A 13 66.378 10.157 -22.953 1.00 31.52 ATOM 58 N CYS A 14 65.498 9.771 -20.890 1.00 30.23 ATOM 59 CA CYS A 14 66.727 10.124 -20.176 1.00 30.67 ATOM 60 C CYS A 14 66.828 9.063 -19.109 1.00 32.08 ATOM 61 O CYS A 14 66.077 9.084 -18.145 1.00 37.23 ATOM 62 CB CYS A 14 66.794 11.572 -19.586 1.00 30.51 ATOM 63 SG CYS A 14 66.099 11.943 -17.929 1.00 23.43 ATOM 64 N GLY A 15 67.668 8.073 -19.357 1.00 30.96 ATOM 65 CA GLY A 15 67.960 7.033 -18.371 1.00 30.06 ATOM 66 C GLY A 15 69.149 7.551 -17.613 1.00 33.68 ATOM 67 O GLY A 15 70.071 6.736 -17.264 1.00 38.29 ATOM 68 N LYS A 16 69.163 8.844 -17.255 1.00 30.59 ATOM 69 CA LYS A 16 70.315 9.438 -16.607 1.00 28.76 ATOM 70 C LYS A 16 70.544 8.857 -15.212 1.00 29.56 ATOM 71 O LYS A 16 69.611 8.319 -14.580 1.00 27.29 ATOM 72 CB LYS A 16 70.206 10.949 -16.478 1.00 27.21 ATOM 73 CG LYS A 16 70.121 11.741 -17.791 1.00 29.18 ATOM 74 CD LYS A 16 70.619 13.175 -17.584 1.00 28.89 ATOM 75 CE LYS A 16 71.452 13.739 -18.737 1.00 30.20 ATOM 76 NZ LYS A 16 72.260 14.900 -18.237 1.00 29.20 ATOM 77 N ASN A 17 71.811 8.885 -14.812 1.00 29.90 ATOM 78 CA ASN A 17 72.281 8.271 -13.575 1.00 29.63 ATOM 79 C ASN A 17 72.742 9.352 -12.612 1.00 30.94 ATOM 80 O ASN A 17 73.456 10.303 -13.032 1.00 37.80 ATOM 81 CB ASN A 17 73.419 7.273 -13.886 1.00 29.81 ATOM 82 CG ASN A 17 74.305 6.995 -12.695 1.00 31.36 ATOM 83 OD1 ASN A 17 73.944 6.266 -11.777 1.00 35.59 ATOM 84 ND2 ASN A 17 75.475 7.606 -12.691 1.00 32.70 ATOM 85 N PHE A 18 72.398 9.199 -11.329 1.00 28.52 ATOM 86 CA PHE A 18 72.630 10.253 -10.342 1.00 26.42 ATOM 87 C PHE A 18 73.277 9.744 -9.084 1.00 28.46 ATOM 88 O PHE A 18 72.856 8.693 -8.579 1.00 28.18 ATOM 89 CB PHE A 18 71.315 10.943 -9.938 1.00 26.59 ATOM 90 CG PHE A 18 70.521 11.472 -11.101 1.00 24.44 ATOM 91 CD1 PHE A 18 70.985 12.556 -11.832 1.00 23.21 ATOM 92 CD2 PHE A 18 69.308 10.860 -11.465 1.00 22.20 ATOM 93 CE1 PHE A 18 70.261 13.018 -12.925 1.00 23.46 ATOM 94 CE2 PHE A 18 68.586 11.332 -12.538 1.00 20.38 ATOM 95 CZ PHE A 18 69.054 12.412 -13.270 1.00 21.66 ATOM 96 N PHE A 19 74.242 10.524 -8.558 1.00 29.28 ATOM 97 CA PHE A 19 74.987 10.188 -7.350 1.00 31.55 ATOM 98 C PHE A 19 74.118 9.778 -6.162 1.00 32.49 ATOM 99 O PHE A 19 74.501 8.882 -5.424 1.00 34.25 ATOM 100 CB PHE A 19 75.877 11.368 -6.968 1.00 35.74 ATOM 101 CG PHE A 19 75.126 12.590 -6.483 1.00 39.37 ATOM 102 CD1 PHE A 19 74.536 13.495 -7.370 1.00 42.26 ATOM 103 CD2 PHE A 19 74.956 12.798 -5.113 1.00 40.84 ATOM 104 CE1 PHE A 19 73.832 14.594 -6.905 1.00 41.31 ATOM 105 CE2 PHE A 19 74.250 13.905 -4.633 1.00 42.33 ATOM 106 CZ PHE A 19 73.688 14.812 -5.540 1.00 43.27 ATOM 107 N SER A 20 72.968 10.445 -5.993 1.00 32.63 ATOM 108 CA SER A 20 72.112 10.207 -4.841 1.00 31.83 ATOM 109 C SER A 20 70.689 9.871 -5.266 1.00 32.24 ATOM 110 O SER A 20 70.268 10.230 -6.351 1.00 33.14 ATOM 111 CB SER A 20 72.066 11.395 -3.943 1.00 31.06 ATOM 112 OG SER A 20 71.046 12.313 -4.351 1.00 26.26 ATOM 113 N HIS A 21 69.965 9.217 -4.375 1.00 34.66 ATOM 114 CA HIS A 21 68.569 8.973 -4.669 1.00 33.22 ATOM 115 C HIS A 21 67.739 10.232 -4.491 1.00 33.37 ATOM 116 O HIS A 21 66.860 10.532 -5.293 1.00 33.53 ATOM 117 CB HIS A 21 68.002 7.856 -3.819 1.00 34.62 ATOM 118 CG HIS A 21 66.689 7.370 -4.321 1.00 38.21 ATOM 119 ND1 HIS A 21 65.497 7.898 -3.876 1.00 38.88 ATOM 120 CD2 HIS A 21 66.368 6.465 -5.284 1.00 40.29 ATOM 121 CE1 HIS A 21 64.492 7.325 -4.517 1.00 39.08 ATOM 122 NE2 HIS A 21 64.995 6.457 -5.383 1.00 40.95 ATOM 123 N LYS A 22 68.041 10.995 -3.445 1.00 32.92 ATOM 124 CA LYS A 22 67.308 12.211 -3.156 1.00 34.00 ATOM 125 C LYS A 22 67.300 13.165 -4.366 1.00 33.97 ATOM 126 O LYS A 22 66.243 13.635 -4.779 1.00 30.63 ATOM 127 CB LYS A 22 67.912 12.886 -1.932 1.00 40.14 ATOM 128 CG LYS A 22 68.938 12.037 -1.144 1.00 45.84 ATOM 129 CD LYS A 22 69.242 12.713 0.170 1.00 45.49 ATOM 130 CE LYS A 22 70.271 11.988 1.031 1.00 46.86 ATOM 131 NZ LYS A 22 71.654 12.510 0.867 1.00 49.63 ATOM 132 N TYR A 23 68.469 13.326 -4.978 1.00 36.35 ATOM 133 CA TYR A 23 68.527 14.110 -6.184 1.00 32.41 ATOM 134 C TYR A 23 67.871 13.438 -7.346 1.00 33.66 ATOM 135 O TYR A 23 67.527 14.098 -8.347 1.00 28.62 ATOM 136 CB TYR A 23 69.974 14.508 -6.560 1.00 32.28 ATOM 137 CG TYR A 23 69.979 15.438 -7.752 1.00 33.82 ATOM 138 CD1 TYR A 23 69.439 16.739 -7.648 1.00 33.53 ATOM 139 CD2 TYR A 23 70.389 14.993 -9.022 1.00 33.99 ATOM 140 CE1 TYR A 23 69.353 17.570 -8.753 1.00 34.06 ATOM 141 CE2 TYR A 23 70.288 15.821 -10.127 1.00 36.14 ATOM 142 CZ TYR A 23 69.782 17.100 -9.983 1.00 36.03 ATOM 143 OH TYR A 23 69.724 17.888 -11.100 1.00 41.10 ATOM 144 N LEU A 24 67.691 12.120 -7.287 1.00 39.04 ATOM 145 CA LEU A 24 66.884 11.453 -8.331 1.00 41.79 ATOM 146 C LEU A 24 65.410 11.921 -8.236 1.00 43.51 ATOM 147 O LEU A 24 64.769 12.152 -9.251 1.00 48.01 ATOM 148 CB LEU A 24 66.992 9.944 -8.289 1.00 46.16 ATOM 149 CG LEU A 24 66.386 9.152 -9.476 1.00 53.71 ATOM 150 CD1 LEU A 24 66.995 7.745 -9.545 1.00 57.43 ATOM 151 CD2 LEU A 24 64.853 9.010 -9.529 1.00 44.40 ATOM 152 N VAL A 25 64.912 12.068 -7.020 1.00 38.96 ATOM 153 CA VAL A 25 63.609 12.672 -6.833 1.00 40.35 ATOM 154 C VAL A 25 63.599 14.110 -7.360 1.00 38.70 ATOM 155 O VAL A 25 62.774 14.463 -8.223 1.00 33.37 ATOM 156 CB VAL A 25 63.147 12.612 -5.362 1.00 42.33 ATOM 157 CG1 VAL A 25 61.723 13.149 -5.249 1.00 41.45 ATOM 158 CG2 VAL A 25 63.320 11.197 -4.820 1.00 44.00 ATOM 159 N GLN A 26 64.532 14.940 -6.868 1.00 36.81 ATOM 160 CA GLN A 26 64.557 16.357 -7.235 1.00 31.54 ATOM 161 C GLN A 26 64.655 16.575 -8.742 1.00 33.57 ATOM 162 O GLN A 26 64.000 17.470 -9.302 1.00 38.26 ATOM 163 CB GLN A 26 65.732 17.058 -6.585 1.00 28.76 ATOM 164 CG GLN A 26 65.770 17.149 -5.096 1.00 30.87 ATOM 165 CD GLN A 26 66.481 18.431 -4.622 1.00 32.35 ATOM 166 OE1 GLN A 26 65.887 19.242 -3.925 1.00 37.81 ATOM 167 NE2 GLN A 26 67.750 18.615 -4.999 1.00 31.58 ATOM 168 N HIS A 27 65.390 15.663 -9.402 1.00 32.17 ATOM 169 CA HIS A 27 65.565 15.692 -10.838 1.00 28.76 ATOM 170 C HIS A 27 64.246 15.696 -11.599 1.00 29.87 ATOM 171 O HIS A 27 64.201 16.139 -12.754 1.00 30.63 ATOM 172 CB HIS A 27 66.470 14.545 -11.303 1.00 25.63 ATOM 173 CG HIS A 27 66.358 14.208 -12.762 1.00 22.60 ATOM 174 ND1 HIS A 27 66.958 14.960 -13.745 1.00 23.17 ATOM 175 CD2 HIS A 27 65.671 13.224 -13.401 1.00 21.40 ATOM 176 CE1 HIS A 27 66.645 14.452 -14.934 1.00 22.04 ATOM 177 NE2 HIS A 27 65.906 13.373 -14.746 1.00 19.41 ATOM 178 N GLN A 28 63.159 15.247 -10.990 1.00 29.18 ATOM 179 CA GLN A 28 61.985 15.035 -11.814 1.00 33.24 ATOM 180 C GLN A 28 61.320 16.309 -12.309 1.00 33.16 ATOM 181 O GLN A 28 60.690 16.272 -13.332 1.00 37.86 ATOM 182 CB GLN A 28 61.017 14.115 -11.135 1.00 39.21 ATOM 183 CG GLN A 28 61.634 12.784 -10.667 1.00 43.23 ATOM 184 CD GLN A 28 62.256 11.925 -11.802 1.00 51.90 ATOM 185 OE1 GLN A 28 63.412 11.495 -11.694 1.00 57.05 ATOM 186 NE2 GLN A 28 61.509 11.724 -12.905 1.00 54.37 ATOM 187 N ARG A 29 61.598 17.416 -11.647 1.00 31.73 ATOM 188 CA ARG A 29 61.076 18.688 -12.069 1.00 31.13 ATOM 189 C ARG A 29 61.420 18.998 -13.518 1.00 36.99 ATOM 190 O ARG A 29 60.615 19.582 -14.250 1.00 47.21 ATOM 191 CB ARG A 29 61.512 19.792 -11.133 1.00 26.54 ATOM 192 CG ARG A 29 63.017 20.052 -11.130 1.00 24.42 ATOM 193 CD ARG A 29 63.425 20.999 -10.015 1.00 20.51 ATOM 194 NE ARG A 29 63.544 20.339 -8.736 1.00 18.08 ATOM 195 CZ ARG A 29 63.665 20.956 -7.587 1.00 18.02 ATOM 196 NH1 ARG A 29 63.714 22.281 -7.549 1.00 17.82 ATOM 197 NH2 ARG A 29 63.772 20.240 -6.461 1.00 17.99 ATOM 198 N VAL A 30 62.572 18.537 -13.971 1.00 35.69 ATOM 199 CA VAL A 30 62.959 18.541 -15.407 1.00 33.35 ATOM 200 C VAL A 30 61.822 18.107 -16.332 1.00 31.03 ATOM 201 O VAL A 30 61.645 18.636 -17.410 1.00 29.76 ATOM 202 CB VAL A 30 64.202 17.644 -15.629 1.00 33.09 ATOM 203 CG1 VAL A 30 64.490 17.467 -17.101 1.00 33.79 ATOM 204 CG2 VAL A 30 65.397 18.221 -14.891 1.00 29.85 ATOM 205 N HIS A 31 61.054 17.136 -15.921 1.00 34.30 ATOM 206 CA HIS A 31 60.043 16.574 -16.798 1.00 37.63 ATOM 207 C HIS A 31 58.666 17.231 -16.636 1.00 43.31 ATOM 208 O HIS A 31 57.838 17.038 -17.476 1.00 48.42 ATOM 209 CB HIS A 31 59.986 15.050 -16.650 1.00 30.45 ATOM 210 CG HIS A 31 61.309 14.359 -16.846 1.00 28.53 ATOM 211 ND1 HIS A 31 62.015 14.363 -18.040 1.00 29.05 ATOM 212 CD2 HIS A 31 62.050 13.632 -15.987 1.00 25.40 ATOM 213 CE1 HIS A 31 63.145 13.699 -17.884 1.00 27.67 ATOM 214 NE2 HIS A 31 63.182 13.219 -16.656 1.00 24.03 ATOM 215 N SER A 32 58.469 18.005 -15.566 1.00 46.32 ATOM 216 CA SER A 32 57.246 18.772 -15.404 1.00 45.01 ATOM 217 C SER A 32 57.420 20.117 -16.043 1.00 42.27 ATOM 218 O SER A 32 58.518 20.652 -16.059 1.00 37.53 ATOM 219 CB SER A 32 56.874 18.920 -13.933 1.00 43.33 ATOM 220 OG SER A 32 55.543 19.400 -13.788 1.00 45.64 ATOM 221 N ASP A 33 56.331 20.677 -16.529 1.00 44.74 ATOM 222 CA ASP A 33 56.320 22.060 -17.015 1.00 43.40 ATOM 223 C ASP A 33 56.108 23.076 -15.884 1.00 41.01 ATOM 224 O ASP A 33 56.280 24.266 -16.098 1.00 43.77 ATOM 225 CB ASP A 33 55.271 22.230 -18.092 1.00 45.56 ATOM 226 CG ASP A 33 55.725 21.731 -19.462 1.00 58.93 ATOM 227 OD1 ASP A 33 56.521 22.452 -20.131 1.00 60.40 ATOM 228 OD2 ASP A 33 55.243 20.642 -19.892 1.00 61.62 ATOM 229 ZN ZN A 65.083 11.932 -16.054 1.00 33.98 TER