HEADER TRANSLATION 31-DEC-69 6Q8Y TITLE Cryo-EM structure of the mRNA translating and degrading yeast 80S TITLE 2 ribosome-Xrn1 nuclease complex COMPND MOL_ID: 20; COMPND 2 MOLECULE: 60S ribosomal protein L41-B; COMPND 3 CHAIN: AS; EXPDTA ELECTRON MICROSCOPY DBREF 6Q8Y A 1 25 UNP P0CX87 RL41B_YEAST 1 25 SEQRES 1 AS 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 AS 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET A 1 239.377 176.692 200.540 1.00 14.50 ATOM 2 CA MET A 1 238.283 177.271 199.749 1.00 14.50 ATOM 3 C MET A 1 238.833 177.670 198.399 1.00 14.50 ATOM 4 O MET A 1 240.042 177.774 198.222 1.00 14.50 ATOM 5 CB MET A 1 237.660 178.455 200.485 1.00 14.50 ATOM 6 CG MET A 1 238.489 179.699 200.539 1.00 14.50 ATOM 7 SD MET A 1 237.785 180.947 201.620 1.00 14.50 ATOM 8 CE MET A 1 236.344 181.385 200.679 1.00 14.50 ATOM 9 N ARG A 2 237.943 177.867 197.441 1.00 5.52 ATOM 10 CA ARG A 2 238.354 178.261 196.110 1.00 5.52 ATOM 11 C ARG A 2 239.100 179.584 196.144 1.00 5.52 ATOM 12 O ARG A 2 238.683 180.544 196.798 1.00 5.52 ATOM 13 CB ARG A 2 237.140 178.360 195.204 1.00 5.52 ATOM 14 CG ARG A 2 237.430 178.209 193.752 1.00 5.52 ATOM 15 CD ARG A 2 236.233 178.440 192.914 1.00 5.52 ATOM 16 NE ARG A 2 236.542 178.858 191.567 1.00 5.52 ATOM 17 CZ ARG A 2 235.657 178.997 190.592 1.00 5.52 ATOM 18 NH1 ARG A 2 234.382 178.765 190.783 1.00 5.52 ATOM 19 NH2 ARG A 2 236.054 179.386 189.405 1.00 5.52 ATOM 20 N ALA A 3 240.220 179.619 195.425 1.00 11.75 ATOM 21 CA ALA A 3 241.123 180.757 195.498 1.00 11.75 ATOM 22 C ALA A 3 240.477 182.013 194.947 1.00 11.75 ATOM 23 O ALA A 3 240.756 183.120 195.412 1.00 11.75 ATOM 24 CB ALA A 3 242.402 180.430 194.749 1.00 11.75 ATOM 25 N LYS A 4 239.618 181.854 193.949 1.00 5.87 ATOM 26 CA LYS A 4 238.809 182.953 193.440 1.00 5.87 ATOM 27 C LYS A 4 238.034 183.637 194.550 1.00 5.87 ATOM 28 O LYS A 4 238.027 184.869 194.657 1.00 5.87 ATOM 29 CB LYS A 4 237.854 182.409 192.395 1.00 5.87 ATOM 30 CG LYS A 4 237.446 183.338 191.345 1.00 5.87 ATOM 31 CD LYS A 4 236.503 182.682 190.461 1.00 5.87 ATOM 32 CE LYS A 4 236.372 183.384 189.207 1.00 5.87 ATOM 33 NZ LYS A 4 235.163 182.984 188.539 1.00 5.87 ATOM 34 N TRP A 5 237.394 182.848 195.399 1.00 4.87 ATOM 35 CA TRP A 5 236.542 183.392 196.428 1.00 4.87 ATOM 36 C TRP A 5 237.346 183.877 197.615 1.00 4.87 ATOM 37 O TRP A 5 236.931 184.818 198.290 1.00 4.87 ATOM 38 CB TRP A 5 235.517 182.344 196.838 1.00 4.87 ATOM 39 CG TRP A 5 234.697 181.735 195.728 1.00 4.87 ATOM 40 CD1 TRP A 5 234.236 180.463 195.688 1.00 4.87 ATOM 41 CD2 TRP A 5 234.224 182.360 194.529 1.00 4.87 ATOM 42 NE1 TRP A 5 233.523 180.246 194.549 1.00 4.87 ATOM 43 CE2 TRP A 5 233.501 181.398 193.819 1.00 4.87 ATOM 44 CE3 TRP A 5 234.343 183.633 193.983 1.00 4.87 ATOM 45 CZ2 TRP A 5 232.916 181.667 192.604 1.00 4.87 ATOM 46 CZ3 TRP A 5 233.766 183.885 192.789 1.00 4.87 ATOM 47 CH2 TRP A 5 233.059 182.918 192.113 1.00 4.87 ATOM 48 N ARG A 6 238.511 183.287 197.862 1.00 10.29 ATOM 49 CA ARG A 6 239.408 183.843 198.865 1.00 10.29 ATOM 50 C ARG A 6 239.939 185.206 198.433 1.00 10.29 ATOM 51 O ARG A 6 240.085 186.119 199.255 1.00 10.29 ATOM 52 CB ARG A 6 240.541 182.866 199.129 1.00 10.29 ATOM 53 CG ARG A 6 241.506 183.298 200.187 1.00 10.29 ATOM 54 CD ARG A 6 242.291 182.139 200.704 1.00 10.29 ATOM 55 NE ARG A 6 243.200 182.547 201.774 1.00 10.29 ATOM 56 CZ ARG A 6 244.533 182.535 201.729 1.00 10.29 ATOM 57 NH1 ARG A 6 245.210 182.134 200.656 1.00 10.29 ATOM 58 NH2 ARG A 6 245.210 182.935 202.795 1.00 10.29 ATOM 59 N LYS A 7 240.223 185.360 197.143 1.00 6.79 ATOM 60 CA LYS A 7 240.634 186.644 196.599 1.00 6.79 ATOM 61 C LYS A 7 239.526 187.678 196.727 1.00 6.79 ATOM 62 O LYS A 7 239.772 188.815 197.147 1.00 6.79 ATOM 63 CB LYS A 7 241.043 186.449 195.152 1.00 6.79 ATOM 64 CG LYS A 7 241.507 187.642 194.411 1.00 6.79 ATOM 65 CD LYS A 7 242.122 187.211 193.128 1.00 6.79 ATOM 66 CE LYS A 7 242.527 188.376 192.313 1.00 6.79 ATOM 67 NZ LYS A 7 243.026 187.954 191.010 1.00 6.79 ATOM 68 N LYS A 8 238.301 187.300 196.377 1.00 6.18 ATOM 69 CA LYS A 8 237.161 188.189 196.564 1.00 6.18 ATOM 70 C LYS A 8 236.965 188.561 198.033 1.00 6.18 ATOM 71 O LYS A 8 236.644 189.713 198.352 1.00 6.18 ATOM 72 CB LYS A 8 235.905 187.533 195.994 1.00 6.18 ATOM 73 CG LYS A 8 234.791 188.484 195.724 1.00 6.18 ATOM 74 CD LYS A 8 233.481 187.818 195.455 1.00 6.18 ATOM 75 CE LYS A 8 233.150 187.760 194.012 1.00 6.18 ATOM 76 NZ LYS A 8 232.740 189.056 193.495 1.00 6.18 ATOM 77 N ARG A 9 237.173 187.606 198.939 1.00 7.12 ATOM 78 CA ARG A 9 237.040 187.870 200.364 1.00 7.12 ATOM 79 C ARG A 9 238.044 188.918 200.813 1.00 7.12 ATOM 80 O ARG A 9 237.683 189.911 201.459 1.00 7.12 ATOM 81 CB ARG A 9 237.230 186.571 201.138 1.00 7.12 ATOM 82 CG ARG A 9 236.652 186.560 202.547 1.00 7.12 ATOM 83 CD ARG A 9 237.327 185.594 203.482 1.00 7.12 ATOM 84 NE ARG A 9 236.611 184.332 203.590 1.00 7.12 ATOM 85 CZ ARG A 9 235.563 184.120 204.371 1.00 7.12 ATOM 86 NH1 ARG A 9 235.061 185.064 205.166 1.00 7.12 ATOM 87 NH2 ARG A 9 235.017 182.931 204.353 1.00 7.12 ATOM 88 N THR A 10 239.314 188.712 200.472 1.00 5.59 ATOM 89 CA THR A 10 240.357 189.665 200.824 1.00 5.59 ATOM 90 C THR A 10 240.147 191.019 200.170 1.00 5.59 ATOM 91 O THR A 10 240.533 192.033 200.743 1.00 5.59 ATOM 92 CB THR A 10 241.724 189.124 200.434 1.00 5.59 ATOM 93 OG1 THR A 10 241.662 188.628 199.098 1.00 5.59 ATOM 94 CG2 THR A 10 242.139 188.020 201.357 1.00 5.59 ATOM 95 N ARG A 11 239.545 191.069 198.987 1.00 6.16 ATOM 96 CA ARG A 11 239.293 192.357 198.352 1.00 6.16 ATOM 97 C ARG A 11 238.220 193.148 199.081 1.00 6.16 ATOM 98 O ARG A 11 238.360 194.362 199.288 1.00 6.16 ATOM 99 CB ARG A 11 238.882 192.156 196.909 1.00 6.16 ATOM 100 CG ARG A 11 240.008 192.004 195.979 1.00 6.16 ATOM 101 CD ARG A 11 239.535 191.868 194.590 1.00 6.16 ATOM 102 NE ARG A 11 240.652 191.665 193.685 1.00 6.16 ATOM 103 CZ ARG A 11 240.637 191.932 192.387 1.00 6.16 ATOM 104 NH1 ARG A 11 239.565 192.437 191.796 1.00 6.16 ATOM 105 NH2 ARG A 11 241.723 191.701 191.682 1.00 6.16 ATOM 106 N ARG A 12 237.125 192.489 199.443 1.00 8.27 ATOM 107 CA ARG A 12 236.078 193.170 200.187 1.00 8.27 ATOM 108 C ARG A 12 236.599 193.645 201.530 1.00 8.27 ATOM 109 O ARG A 12 236.319 194.769 201.967 1.00 8.27 ATOM 110 CB ARG A 12 234.890 192.235 200.345 1.00 8.27 ATOM 111 CG ARG A 12 234.263 191.920 199.039 1.00 8.27 ATOM 112 CD ARG A 12 232.964 191.187 199.141 1.00 8.27 ATOM 113 NE ARG A 12 232.226 191.306 197.885 1.00 8.27 ATOM 114 CZ ARG A 12 231.159 190.585 197.556 1.00 8.27 ATOM 115 NH1 ARG A 12 230.673 189.669 198.380 1.00 8.27 ATOM 116 NH2 ARG A 12 230.572 190.787 196.386 1.00 8.27 ATOM 117 N LEU A 13 237.406 192.812 202.165 1.00 6.37 ATOM 118 CA LEU A 13 238.108 193.167 203.385 1.00 6.37 ATOM 119 C LEU A 13 239.038 194.361 203.184 1.00 6.37 ATOM 120 O LEU A 13 239.100 195.256 204.033 1.00 6.37 ATOM 121 CB LEU A 13 238.867 191.936 203.824 1.00 6.37 ATOM 122 CG LEU A 13 239.481 191.731 205.189 1.00 6.37 ATOM 123 CD1 LEU A 13 239.346 190.283 205.522 1.00 6.37 ATOM 124 CD2 LEU A 13 240.920 192.108 205.205 1.00 6.37 ATOM 125 N LYS A 14 239.742 194.396 202.057 1.00 5.82 ATOM 126 CA LYS A 14 240.700 195.455 201.785 1.00 5.82 ATOM 127 C LYS A 14 240.014 196.799 201.625 1.00 5.82 ATOM 128 O LYS A 14 240.502 197.814 202.136 1.00 5.82 ATOM 129 CB LYS A 14 241.518 195.123 200.540 1.00 5.82 ATOM 130 CG LYS A 14 242.896 194.637 200.827 1.00 5.82 ATOM 131 CD LYS A 14 243.629 194.078 199.619 1.00 5.82 ATOM 132 CE LYS A 14 244.060 195.134 198.631 1.00 5.82 ATOM 133 NZ LYS A 14 245.263 195.888 199.070 1.00 5.82 ATOM 134 N ARG A 15 238.884 196.835 200.922 1.00 8.13 ATOM 135 CA ARG A 15 238.207 198.114 200.762 1.00 8.13 ATOM 136 C ARG A 15 237.465 198.532 202.027 1.00 8.13 ATOM 137 O ARG A 15 237.397 199.736 202.324 1.00 8.13 ATOM 138 CB ARG A 15 237.288 198.104 199.538 1.00 8.13 ATOM 139 CG ARG A 15 236.219 197.105 199.481 1.00 8.13 ATOM 140 CD ARG A 15 235.559 197.168 198.115 1.00 8.13 ATOM 141 NE ARG A 15 234.233 196.565 198.078 1.00 8.13 ATOM 142 CZ ARG A 15 233.483 196.470 196.984 1.00 8.13 ATOM 143 NH1 ARG A 15 233.921 196.918 195.816 1.00 8.13 ATOM 144 NH2 ARG A 15 232.282 195.909 197.059 1.00 8.13 ATOM 145 N LYS A 16 236.977 197.575 202.820 1.00 7.99 ATOM 146 CA LYS A 16 236.463 197.912 204.144 1.00 7.99 ATOM 147 C LYS A 16 237.539 198.592 204.973 1.00 7.99 ATOM 148 O LYS A 16 237.290 199.582 205.670 1.00 7.99 ATOM 149 CB LYS A 16 235.996 196.659 204.869 1.00 7.99 ATOM 150 CG LYS A 16 234.662 196.073 204.462 1.00 7.99 ATOM 151 CD LYS A 16 233.501 197.022 204.611 1.00 7.99 ATOM 152 CE LYS A 16 232.214 196.270 204.944 1.00 7.99 ATOM 153 NZ LYS A 16 231.755 195.313 203.891 1.00 7.99 ATOM 154 N ARG A 17 238.752 198.068 204.892 1.00 8.42 ATOM 155 CA ARG A 17 239.859 198.574 205.680 1.00 8.42 ATOM 156 C ARG A 17 240.322 199.949 205.207 1.00 8.42 ATOM 157 O ARG A 17 240.636 200.812 206.033 1.00 8.42 ATOM 158 CB ARG A 17 240.972 197.547 205.609 1.00 8.42 ATOM 159 CG ARG A 17 242.075 197.721 206.547 1.00 8.42 ATOM 160 CD ARG A 17 243.217 196.799 206.212 1.00 8.42 ATOM 161 NE ARG A 17 243.076 195.511 206.895 1.00 8.42 ATOM 162 CZ ARG A 17 243.196 194.307 206.340 1.00 8.42 ATOM 163 NH1 ARG A 17 243.428 194.129 205.054 1.00 8.42 ATOM 164 NH2 ARG A 17 243.071 193.248 207.107 1.00 8.42 ATOM 165 N ARG A 18 240.387 200.161 203.893 1.00 6.90 ATOM 166 CA ARG A 18 240.596 201.499 203.344 1.00 6.90 ATOM 167 C ARG A 18 239.601 202.505 203.903 1.00 6.90 ATOM 168 O ARG A 18 239.987 203.610 204.302 1.00 6.90 ATOM 169 CB ARG A 18 240.464 201.480 201.831 1.00 6.90 ATOM 170 CG ARG A 18 241.597 200.887 201.080 1.00 6.90 ATOM 171 CD ARG A 18 241.300 200.897 199.610 1.00 6.90 ATOM 172 NE ARG A 18 241.980 199.817 198.902 1.00 6.90 ATOM 173 CZ ARG A 18 241.486 199.128 197.875 1.00 6.90 ATOM 174 NH1 ARG A 18 240.281 199.369 197.380 1.00 6.90 ATOM 175 NH2 ARG A 18 242.226 198.175 197.326 1.00 6.90 ATOM 176 N LYS A 19 238.315 202.157 203.904 1.00 9.94 ATOM 177 CA LYS A 19 237.297 203.088 204.383 1.00 9.94 ATOM 178 C LYS A 19 237.464 203.372 205.870 1.00 9.94 ATOM 179 O LYS A 19 237.393 204.529 206.316 1.00 9.94 ATOM 180 CB LYS A 19 235.912 202.512 204.093 1.00 9.94 ATOM 181 CG LYS A 19 234.791 203.506 204.121 1.00 9.94 ATOM 182 CD LYS A 19 233.480 202.837 203.794 1.00 9.94 ATOM 183 CE LYS A 19 232.342 203.828 203.729 1.00 9.94 ATOM 184 NZ LYS A 19 231.955 204.289 205.071 1.00 9.94 ATOM 185 N VAL A 20 237.706 202.326 206.651 1.00 9.25 ATOM 186 CA VAL A 20 237.856 202.477 208.091 1.00 9.25 ATOM 187 C VAL A 20 239.092 203.298 208.420 1.00 9.25 ATOM 188 O VAL A 20 239.171 203.930 209.479 1.00 9.25 ATOM 189 CB VAL A 20 237.892 201.090 208.752 1.00 9.25 ATOM 190 CG1 VAL A 20 238.426 201.159 210.141 1.00 9.25 ATOM 191 CG2 VAL A 20 236.504 200.502 208.767 1.00 9.25 ATOM 192 N ARG A 21 240.084 203.283 207.541 1.00 8.02 ATOM 193 CA ARG A 21 241.273 204.082 207.779 1.00 8.02 ATOM 194 C ARG A 21 241.085 205.530 207.340 1.00 8.02 ATOM 195 O ARG A 21 241.620 206.449 207.970 1.00 8.02 ATOM 196 CB ARG A 21 242.451 203.456 207.065 1.00 8.02 ATOM 197 CG ARG A 21 243.714 203.792 207.722 1.00 8.02 ATOM 198 CD ARG A 21 244.860 203.112 207.128 1.00 8.02 ATOM 199 NE ARG A 21 246.053 203.904 207.345 1.00 8.02 ATOM 200 CZ ARG A 21 247.263 203.560 206.951 1.00 8.02 ATOM 201 NH1 ARG A 21 248.269 204.369 207.207 1.00 8.02 ATOM 202 NH2 ARG A 21 247.471 202.433 206.304 1.00 8.02 ATOM 203 N ALA A 22 240.344 205.751 206.259 1.00 8.80 ATOM 204 CA ALA A 22 239.928 207.091 205.882 1.00 8.80 ATOM 205 C ALA A 22 239.130 207.792 206.965 1.00 8.80 ATOM 206 O ALA A 22 239.176 209.024 207.038 1.00 8.80 ATOM 207 CB ALA A 22 239.093 207.041 204.623 1.00 8.80 ATOM 208 N ARG A 23 238.374 207.042 207.766 1.00 9.49 ATOM 209 CA ARG A 23 237.682 207.634 208.909 1.00 9.49 ATOM 210 C ARG A 23 238.628 208.448 209.780 1.00 9.49 ATOM 211 O ARG A 23 238.295 209.555 210.215 1.00 9.49 ATOM 212 CB ARG A 23 237.038 206.550 209.751 1.00 9.49 ATOM 213 CG ARG A 23 235.746 206.066 209.251 1.00 9.49 ATOM 214 CD ARG A 23 235.206 205.035 210.182 1.00 9.49 ATOM 215 NE ARG A 23 234.583 205.660 211.335 1.00 9.49 ATOM 216 CZ ARG A 23 233.361 206.171 211.348 1.00 9.49 ATOM 217 NH1 ARG A 23 232.912 206.711 212.464 1.00 9.49 ATOM 218 NH2 ARG A 23 232.593 206.146 210.266 1.00 9.49 ATOM 219 N SER A 24 239.806 207.905 210.063 1.00 9.19 ATOM 220 CA SER A 24 240.781 208.619 210.871 1.00 9.19 ATOM 221 C SER A 24 241.560 209.630 210.048 1.00 9.19 ATOM 222 O SER A 24 241.797 210.752 210.506 1.00 9.19 ATOM 223 CB SER A 24 241.738 207.631 211.521 1.00 9.19 ATOM 224 OG SER A 24 242.845 208.311 212.076 1.00 9.19 ATOM 225 N LYS A 25 241.961 209.253 208.841 1.00 11.00 ATOM 226 CA LYS A 25 242.739 210.134 207.985 1.00 11.00 ATOM 227 C LYS A 25 241.830 210.920 207.045 1.00 11.00 ATOM 228 O LYS A 25 241.957 212.138 206.916 1.00 11.00 ATOM 229 CB LYS A 25 243.757 209.332 207.183 1.00 11.00 ATOM 230 CG LYS A 25 244.894 210.170 206.636 1.00 11.00 ATOM 231 CD LYS A 25 245.358 209.682 205.272 1.00 11.00 ATOM 232 CE LYS A 25 244.421 210.091 204.148 1.00 11.00 ATOM 233 NZ LYS A 25 245.183 210.179 202.881 1.00 11.00 TER