HEADER LYASE 31-DEC-69 7AE5 TITLE Structure of Sedimentibacter hydroxybenzoicus vanillic acid TITLE 2 decarboxylase (ShVdcCD) in open form COMPND MOL_ID: 2; COMPND 2 MOLECULE: Protein ShdD; COMPND 3 CHAIN: b, c, d, e, f, a; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.19 ANGSTORMS DBREF 7AE5 f 601 668 UNP Q4R102 SHDD_SEDHY 1 68 SEQRES 1 f 37 CYS HIS ARG CYS GLY SER ASP ASN VAL ARG LYS MET VAL SEQRES 2 f 37 ASP SER PRO VAL GLY ASP ALA TRP GLU VAL TYR VAL CYS SEQRES 3 f 37 GLU LYS CYS CYS TYR SER TRP ARG SER THR GLU ATOM 1 N CYS f 3 -10.290 30.222 2.325 1.00 89.70 ATOM 2 CA CYS f 3 -8.929 30.492 2.776 1.00 87.67 ATOM 3 C CYS f 3 -8.337 29.302 3.522 1.00 86.08 ATOM 4 O CYS f 3 -8.954 28.763 4.441 1.00 86.29 ATOM 5 CB CYS f 3 -8.896 31.732 3.669 1.00 87.56 ATOM 6 SG CYS f 3 -7.238 32.197 4.215 1.00 85.51 ATOM 7 N HIS f 4 -7.129 28.900 3.125 1.00 86.76 ATOM 8 CA HIS f 4 -6.465 27.772 3.765 1.00 85.27 ATOM 9 C HIS f 4 -6.003 28.082 5.183 1.00 84.29 ATOM 10 O HIS f 4 -5.639 27.153 5.912 1.00 83.41 ATOM 11 CB HIS f 4 -5.273 27.320 2.919 1.00 84.59 ATOM 12 N ARG f 5 -6.016 29.350 5.594 1.00 84.77 ATOM 13 CA ARG f 5 -5.538 29.754 6.911 1.00 83.79 ATOM 14 C ARG f 5 -6.662 30.062 7.891 1.00 84.50 ATOM 15 O ARG f 5 -6.594 29.647 9.052 1.00 83.93 ATOM 16 CB ARG f 5 -4.624 30.978 6.786 1.00 83.42 ATOM 17 CG ARG f 5 -4.220 31.598 8.115 1.00 82.53 ATOM 18 CD ARG f 5 -2.874 32.299 8.013 1.00 81.72 ATOM 19 NE ARG f 5 -3.012 33.697 7.621 1.00 82.69 ATOM 20 CZ ARG f 5 -2.009 34.466 7.217 1.00 82.53 ATOM 21 NH1 ARG f 5 -0.771 34.004 7.141 1.00 81.46 ATOM 22 NH2 ARG f 5 -2.254 35.730 6.884 1.00 83.74 ATOM 23 N CYS f 6 -7.699 30.779 7.452 1.00 94.38 ATOM 24 CA CYS f 6 -8.786 31.185 8.331 1.00 95.35 ATOM 25 C CYS f 6 -10.151 30.646 7.925 1.00 96.88 ATOM 26 O CYS f 6 -11.106 30.798 8.697 1.00 98.06 ATOM 27 CB CYS f 6 -8.861 32.718 8.415 1.00 96.55 ATOM 28 SG CYS f 6 -9.581 33.518 6.962 1.00 98.39 ATOM 29 N GLY f 7 -10.278 30.032 6.749 1.00 93.30 ATOM 30 CA GLY f 7 -11.520 29.434 6.316 1.00 95.11 ATOM 31 C GLY f 7 -12.451 30.352 5.551 1.00 96.97 ATOM 32 O GLY f 7 -13.354 29.858 4.866 1.00 98.65 ATOM 33 N SER f 8 -12.257 31.667 5.644 1.00 94.02 ATOM 34 CA SER f 8 -13.154 32.611 4.989 1.00 96.02 ATOM 35 C SER f 8 -13.169 32.392 3.482 1.00 96.85 ATOM 36 O SER f 8 -12.119 32.368 2.832 1.00 95.67 ATOM 37 CB SER f 8 -12.733 34.046 5.308 1.00 95.75 ATOM 38 OG SER f 8 -13.695 34.977 4.843 1.00 97.92 ATOM 39 N ASP f 9 -14.369 32.229 2.928 1.00 99.49 ATOM 40 CA ASP f 9 -14.554 32.092 1.490 1.00100.83 ATOM 41 C ASP f 9 -14.564 33.434 0.770 1.00102.03 ATOM 42 O ASP f 9 -14.809 33.470 -0.440 1.00103.62 ATOM 43 CB ASP f 9 -15.851 31.334 1.193 1.00103.13 ATOM 44 N ASN f 10 -14.308 34.530 1.485 1.00 98.35 ATOM 45 CA ASN f 10 -14.201 35.854 0.875 1.00 99.53 ATOM 46 C ASN f 10 -12.802 36.046 0.282 1.00 98.11 ATOM 47 O ASN f 10 -12.050 36.953 0.639 1.00 97.34 ATOM 48 CB ASN f 10 -14.528 36.934 1.899 1.00 99.79 ATOM 49 N VAL f 11 -12.461 35.152 -0.641 1.00 80.71 ATOM 50 CA VAL f 11 -11.164 35.147 -1.307 1.00 78.06 ATOM 51 C VAL f 11 -11.305 35.846 -2.652 1.00 79.07 ATOM 52 O VAL f 11 -12.283 35.631 -3.379 1.00 80.87 ATOM 53 CB VAL f 11 -10.633 33.707 -1.467 1.00 75.66 ATOM 54 CG1 VAL f 11 -11.681 32.806 -2.116 1.00 76.68 ATOM 55 CG2 VAL f 11 -9.340 33.694 -2.260 1.00 73.67 ATOM 56 N ARG f 12 -10.339 36.700 -2.978 1.00102.74 ATOM 57 CA ARG f 12 -10.381 37.504 -4.190 1.00104.00 ATOM 58 C ARG f 12 -9.292 37.072 -5.162 1.00102.08 ATOM 59 O ARG f 12 -8.251 36.540 -4.764 1.00 99.83 ATOM 60 CB ARG f 12 -10.222 38.993 -3.866 1.00105.50 ATOM 61 N LYS f 13 -9.545 37.304 -6.448 1.00 95.95 ATOM 62 CA LYS f 13 -8.552 37.038 -7.479 1.00 95.06 ATOM 63 C LYS f 13 -7.509 38.147 -7.481 1.00 94.61 ATOM 64 O LYS f 13 -7.852 39.333 -7.435 1.00 96.15 ATOM 65 CB LYS f 13 -9.219 36.927 -8.850 1.00 97.40 ATOM 66 N MET f 14 -6.235 37.761 -7.528 1.00 82.88 ATOM 67 CA MET f 14 -5.132 38.711 -7.468 1.00 82.33 ATOM 68 C MET f 14 -4.457 38.896 -8.821 1.00 83.11 ATOM 69 O MET f 14 -4.431 40.010 -9.352 1.00 84.43 ATOM 70 CB MET f 14 -4.107 38.262 -6.417 1.00 80.28 ATOM 71 N VAL f 15 -3.908 37.832 -9.399 1.00 85.69 ATOM 72 CA VAL f 15 -3.175 37.950 -10.653 1.00 86.90 ATOM 73 C VAL f 15 -3.193 36.596 -11.348 1.00 87.66 ATOM 74 O VAL f 15 -3.172 35.548 -10.698 1.00 86.48 ATOM 75 CB VAL f 15 -1.731 38.454 -10.406 1.00 85.76 ATOM 76 CG1 VAL f 15 -0.983 37.511 -9.486 1.00 83.86 ATOM 77 CG2 VAL f 15 -0.981 38.629 -11.708 1.00 87.41 ATOM 78 N ASP f 16 -3.261 36.629 -12.675 1.00 95.65 ATOM 79 CA ASP f 16 -3.023 35.459 -13.504 1.00 97.11 ATOM 80 C ASP f 16 -1.569 35.460 -13.958 1.00 97.36 ATOM 81 O ASP f 16 -0.928 36.512 -14.025 1.00 97.19 ATOM 82 CB ASP f 16 -3.954 35.443 -14.718 1.00100.41 ATOM 83 N SER f 17 -1.052 34.271 -14.259 1.00 84.06 ATOM 84 CA SER f 17 0.326 34.123 -14.702 1.00 82.23 ATOM 85 C SER f 17 0.611 35.075 -15.863 1.00 82.18 ATOM 86 O SER f 17 -0.050 34.980 -16.909 1.00 84.16 ATOM 87 CB SER f 17 0.602 32.681 -15.124 1.00 83.10 ATOM 88 OG SER f 17 -0.353 32.231 -16.069 1.00 85.86 ATOM 89 N PRO f 18 1.555 36.011 -15.713 1.00 92.22 ATOM 90 CA PRO f 18 1.802 36.987 -16.789 1.00 92.42 ATOM 91 C PRO f 18 2.111 36.362 -18.139 1.00 93.49 ATOM 92 O PRO f 18 1.860 36.995 -19.172 1.00 94.66 ATOM 93 CB PRO f 18 2.994 37.793 -16.253 1.00 90.34 ATOM 94 CG PRO f 18 2.858 37.706 -14.772 1.00 89.57 ATOM 95 CD PRO f 18 2.308 36.333 -14.488 1.00 90.31 ATOM 96 N VAL f 19 2.643 35.143 -18.169 1.00 83.37 ATOM 97 CA VAL f 19 2.936 34.438 -19.412 1.00 84.89 ATOM 98 C VAL f 19 2.133 33.146 -19.421 1.00 87.00 ATOM 99 O VAL f 19 2.337 32.276 -18.565 1.00 86.38 ATOM 100 CB VAL f 19 4.437 34.151 -19.570 1.00 83.50 ATOM 101 CG1 VAL f 19 4.699 33.415 -20.876 1.00 85.57 ATOM 102 CG2 VAL f 19 5.230 35.443 -19.514 1.00 81.79 ATOM 103 N GLY f 20 1.221 33.022 -20.383 1.00 95.37 ATOM 104 CA GLY f 20 0.449 31.806 -20.514 1.00 98.03 ATOM 105 C GLY f 20 -0.649 31.691 -19.466 1.00 98.45 ATOM 106 O GLY f 20 -1.074 32.666 -18.841 1.00 97.32 ATOM 107 N ASP f 21 -1.113 30.458 -19.287 1.00115.15 ATOM 108 CA ASP f 21 -2.161 30.123 -18.333 1.00116.20 ATOM 109 C ASP f 21 -1.653 29.113 -17.313 1.00115.22 ATOM 110 O ASP f 21 -2.380 28.218 -16.877 1.00117.33 ATOM 111 CB ASP f 21 -3.399 29.592 -19.051 1.00120.40 ATOM 112 N ALA f 22 -0.385 29.255 -16.920 1.00111.50 ATOM 113 CA ALA f 22 0.243 28.257 -16.061 1.00110.71 ATOM 114 C ALA f 22 -0.383 28.233 -14.673 1.00110.32 ATOM 115 O ALA f 22 -0.582 27.157 -14.097 1.00111.57 ATOM 116 CB ALA f 22 1.746 28.517 -15.967 1.00107.83 ATOM 117 N TRP f 23 -0.706 29.399 -14.119 1.00 91.68 ATOM 118 CA TRP f 23 -1.211 29.457 -12.755 1.00 91.44 ATOM 119 C TRP f 23 -1.926 30.780 -12.528 1.00 91.25 ATOM 120 O TRP f 23 -1.911 31.680 -13.371 1.00 90.98 ATOM 121 CB TRP f 23 -0.080 29.283 -11.735 1.00 88.97 ATOM 122 CG TRP f 23 1.133 30.116 -12.038 1.00 86.37 ATOM 123 CD1 TRP f 23 2.300 29.687 -12.601 1.00 85.40 ATOM 124 CD2 TRP f 23 1.298 31.522 -11.798 1.00 84.84 ATOM 125 NE1 TRP f 23 3.179 30.735 -12.727 1.00 83.34 ATOM 126 CE2 TRP f 23 2.588 31.872 -12.241 1.00 82.99 ATOM 127 CE3 TRP f 23 0.480 32.516 -11.250 1.00 85.18 ATOM 128 CZ2 TRP f 23 3.079 33.173 -12.155 1.00 81.54 ATOM 129 CZ3 TRP f 23 0.970 33.808 -11.166 1.00 83.74 ATOM 130 CH2 TRP f 23 2.257 34.124 -11.616 1.00 81.97 ATOM 131 N GLU f 24 -2.558 30.874 -11.362 1.00109.79 ATOM 132 CA GLU f 24 -3.076 32.119 -10.821 1.00109.92 ATOM 133 C GLU f 24 -2.873 32.076 -9.315 1.00109.04 ATOM 134 O GLU f 24 -2.660 31.008 -8.735 1.00108.44 ATOM 135 CB GLU f 24 -4.557 32.325 -11.169 1.00110.72 ATOM 136 N VAL f 25 -2.915 33.241 -8.676 1.00 87.91 ATOM 137 CA VAL f 25 -2.808 33.313 -7.224 1.00 87.23 ATOM 138 C VAL f 25 -4.062 33.978 -6.676 1.00 87.66 ATOM 139 O VAL f 25 -4.591 34.926 -7.268 1.00 88.48 ATOM 140 CB VAL f 25 -1.529 34.047 -6.753 1.00 86.90 ATOM 141 CG1 VAL f 25 -0.322 33.613 -7.570 1.00 86.85 ATOM 142 CG2 VAL f 25 -1.694 35.552 -6.771 1.00 87.52 ATOM 143 N TYR f 26 -4.554 33.450 -5.561 1.00 96.54 ATOM 144 CA TYR f 26 -5.713 33.978 -4.864 1.00 96.99 ATOM 145 C TYR f 26 -5.272 34.612 -3.552 1.00 96.58 ATOM 146 O TYR f 26 -4.229 34.267 -2.990 1.00 95.84 ATOM 147 CB TYR f 26 -6.744 32.875 -4.601 1.00 97.07 ATOM 148 N VAL f 27 -6.077 35.553 -3.070 1.00 99.29 ATOM 149 CA VAL f 27 -5.777 36.293 -1.851 1.00 99.16 ATOM 150 C VAL f 27 -7.029 36.352 -0.991 1.00 99.65 ATOM 151 O VAL f 27 -8.130 36.605 -1.494 1.00100.55 ATOM 152 CB VAL f 27 -5.261 37.714 -2.158 1.00 99.66 ATOM 153 N CYS f 28 -6.859 36.115 0.305 1.00 93.02 ATOM 154 CA CYS f 28 -7.958 36.234 1.251 1.00 93.59 ATOM 155 C CYS f 28 -8.160 37.697 1.620 1.00 94.40 ATOM 156 O CYS f 28 -7.215 38.378 2.030 1.00 94.15 ATOM 157 CB CYS f 28 -7.675 35.400 2.500 1.00 92.95 ATOM 158 SG CYS f 28 -8.868 35.614 3.844 1.00 93.76 ATOM 159 N GLU f 29 -9.390 38.184 1.461 1.00106.23 ATOM 160 CA GLU f 29 -9.703 39.560 1.824 1.00107.23 ATOM 161 C GLU f 29 -9.832 39.759 3.328 1.00107.35 ATOM 162 O GLU f 29 -9.899 40.908 3.778 1.00108.16 ATOM 163 CB GLU f 29 -10.994 40.009 1.133 1.00108.60 ATOM 164 N LYS f 30 -9.865 38.680 4.110 1.00 88.38 ATOM 165 CA LYS f 30 -9.966 38.761 5.563 1.00 88.51 ATOM 166 C LYS f 30 -8.614 38.713 6.261 1.00 87.54 ATOM 167 O LYS f 30 -8.393 39.458 7.220 1.00 87.89 ATOM 168 CB LYS f 30 -10.849 37.628 6.098 1.00 88.60 ATOM 169 N CYS f 31 -7.699 37.848 5.809 1.00 90.03 ATOM 170 CA CYS f 31 -6.412 37.691 6.476 1.00 89.23 ATOM 171 C CYS f 31 -5.254 37.655 5.482 1.00 88.57 ATOM 172 O CYS f 31 -4.228 37.017 5.744 1.00 87.81 ATOM 173 CB CYS f 31 -6.406 36.436 7.355 1.00 88.71 ATOM 174 SG CYS f 31 -6.110 34.884 6.480 1.00 87.85 ATOM 175 N CYS f 32 -5.406 38.339 4.344 1.00 96.34 ATOM 176 CA CYS f 32 -4.364 38.537 3.335 1.00 95.98 ATOM 177 C CYS f 32 -3.434 37.344 3.147 1.00 94.99 ATOM 178 O CYS f 32 -2.228 37.525 2.950 1.00 94.67 ATOM 179 CB CYS f 32 -3.529 39.774 3.674 1.00 96.36 ATOM 180 SG CYS f 32 -4.447 41.120 4.452 1.00 97.61 ATOM 181 N TYR f 33 -3.967 36.128 3.213 1.00 83.76 ATOM 182 CA TYR f 33 -3.176 34.935 2.948 1.00 83.01 ATOM 183 C TYR f 33 -3.206 34.648 1.452 1.00 83.05 ATOM 184 O TYR f 33 -4.276 34.411 0.881 1.00 83.45 ATOM 185 CB TYR f 33 -3.697 33.731 3.731 1.00 82.77 ATOM 186 CG TYR f 33 -2.908 32.470 3.458 1.00 82.16 ATOM 187 CD1 TYR f 33 -1.722 32.212 4.133 1.00 81.74 ATOM 188 CD2 TYR f 33 -3.340 31.547 2.514 1.00 82.16 ATOM 189 CE1 TYR f 33 -0.993 31.066 3.881 1.00 81.36 ATOM 190 CE2 TYR f 33 -2.618 30.400 2.255 1.00 81.76 ATOM 191 CZ TYR f 33 -1.446 30.163 2.941 1.00 81.37 ATOM 192 OH TYR f 33 -0.725 29.020 2.686 1.00 81.14 ATOM 193 N SER f 34 -2.039 34.665 0.824 1.00 96.43 ATOM 194 CA SER f 34 -1.924 34.409 -0.601 1.00 96.54 ATOM 195 C SER f 34 -1.471 32.975 -0.845 1.00 96.04 ATOM 196 O SER f 34 -0.877 32.332 0.024 1.00 95.58 ATOM 197 CB SER f 34 -0.934 35.379 -1.246 1.00 96.77 ATOM 198 OG SER f 34 -0.749 36.530 -0.441 1.00 97.03 ATOM 199 N TRP f 35 -1.766 32.481 -2.045 1.00 82.59 ATOM 200 CA TRP f 35 -1.259 31.195 -2.507 1.00 82.31 ATOM 201 C TRP f 35 -1.530 31.074 -3.998 1.00 82.77 ATOM 202 O TRP f 35 -2.431 31.723 -4.537 1.00 83.31 ATOM 203 CB TRP f 35 -1.876 30.016 -1.740 1.00 82.10 ATOM 204 CG TRP f 35 -3.275 29.653 -2.130 1.00 82.56 ATOM 205 CD1 TRP f 35 -3.651 28.698 -3.028 1.00 82.83 ATOM 206 CD2 TRP f 35 -4.487 30.207 -1.603 1.00 82.96 ATOM 207 NE1 TRP f 35 -5.021 28.635 -3.108 1.00 83.38 ATOM 208 CE2 TRP f 35 -5.558 29.551 -2.243 1.00 83.48 ATOM 209 CE3 TRP f 35 -4.771 31.200 -0.660 1.00 83.05 ATOM 210 CZ2 TRP f 35 -6.889 29.855 -1.970 1.00 84.12 ATOM 211 CZ3 TRP f 35 -6.094 31.500 -0.391 1.00 83.67 ATOM 212 CH2 TRP f 35 -7.136 30.830 -1.044 1.00 84.21 ATOM 213 N ARG f 36 -0.731 30.241 -4.655 1.00 91.21 ATOM 214 CA ARG f 36 -0.819 30.037 -6.092 1.00 91.71 ATOM 215 C ARG f 36 -1.740 28.864 -6.414 1.00 91.92 ATOM 216 O ARG f 36 -2.013 28.004 -5.573 1.00 91.63 ATOM 217 CB ARG f 36 0.571 29.794 -6.685 1.00 91.70 ATOM 218 CG ARG f 36 0.747 30.323 -8.099 1.00 92.36 ATOM 219 CD ARG f 36 2.152 30.072 -8.618 1.00 92.47 ATOM 220 NE ARG f 36 3.180 30.609 -7.734 1.00 92.12 ATOM 221 CZ ARG f 36 3.661 31.842 -7.807 1.00 92.39 ATOM 222 NH1 ARG f 36 3.210 32.708 -8.699 1.00 93.01 ATOM 223 NH2 ARG f 36 4.621 32.214 -6.966 1.00 92.15 ATOM 224 N SER f 37 -2.221 28.842 -7.659 1.00 99.73 ATOM 225 CA SER f 37 -3.100 27.763 -8.095 1.00101.88 ATOM 226 C SER f 37 -2.401 26.412 -8.058 1.00 99.25 ATOM 227 O SER f 37 -3.047 25.385 -7.818 1.00100.76 ATOM 228 CB SER f 37 -3.616 28.047 -9.506 1.00103.48 ATOM 229 OG SER f 37 -3.725 26.851 -10.260 1.00103.42 ATOM 230 N THR f 38 -1.088 26.390 -8.279 1.00105.78 ATOM 231 CA THR f 38 -0.356 25.141 -8.443 1.00104.63 ATOM 232 C THR f 38 0.128 24.538 -7.130 1.00102.09 ATOM 233 O THR f 38 0.513 23.364 -7.117 1.00101.74 ATOM 234 CB THR f 38 0.842 25.350 -9.378 1.00104.16 ATOM 235 OG1 THR f 38 1.734 24.233 -9.273 1.00102.89 ATOM 236 CG2 THR f 38 1.588 26.617 -9.014 1.00102.27 ATOM 237 N GLU f 39 0.125 25.292 -6.035 1.00 96.00 ATOM 238 CA GLU f 39 0.499 24.733 -4.745 1.00 94.53 ATOM 239 C GLU f 39 -0.744 24.294 -3.980 1.00 98.59 ATOM 240 O GLU f 39 -1.829 24.859 -4.138 1.00102.50 ATOM 241 CB GLU f 39 1.296 25.738 -3.908 1.00 92.49 ATOM 242 CG GLU f 39 0.820 27.178 -3.998 1.00 94.64 ATOM 243 CD GLU f 39 1.605 28.106 -3.087 1.00 92.46 ATOM 244 OE1 GLU f 39 2.427 27.606 -2.290 1.00 89.61 ATOM 245 OE2 GLU f 39 1.402 29.335 -3.166 1.00 93.51 ATOM 246 ZN ZN f -7.981 34.079 5.363 1.00 87.07 TER