HEADER TRANSCRIPTION 31-DEC-69 7C17 TITLE The cryo-EM structure of E. coli CueR transcription activation TITLE 2 complex with fully duplex promoter DNA COMPND MOL_ID: 5; COMPND 2 MOLECULE: RNA polymerase sigma factor RpoD; COMPND 3 CHAIN: F; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 7C17 F 1 613 UNP P00579 RPOD_ECOLI 1 613 SEQRES 1 F 32 ARG THR ILE ARG ILE PRO VAL HIS MET ILE GLU THR ILE SEQRES 2 F 32 ASN LYS LEU ASN ARG ILE SER ARG GLN MET LEU GLN GLU SEQRES 3 F 32 MET GLY ARG GLU PRO THR ATOM 1 N ARG F 468 168.453 132.330 123.936 1.00 60.70 ATOM 2 CA ARG F 468 167.001 132.290 123.942 1.00 60.70 ATOM 3 C ARG F 468 166.483 131.271 124.960 1.00 60.70 ATOM 4 O ARG F 468 166.940 130.128 124.971 1.00 60.70 ATOM 5 CB ARG F 468 166.484 131.925 122.551 1.00 60.70 ATOM 6 CG ARG F 468 166.854 132.920 121.466 1.00 60.70 ATOM 7 CD ARG F 468 165.933 134.126 121.501 1.00 60.70 ATOM 8 NE ARG F 468 164.532 133.731 121.398 1.00 60.70 ATOM 9 CZ ARG F 468 163.904 133.498 120.250 1.00 60.70 ATOM 10 NH1 ARG F 468 164.555 133.620 119.102 1.00 60.70 ATOM 11 NH2 ARG F 468 162.627 133.142 120.250 1.00 60.70 ATOM 12 N THR F 469 165.520 131.656 125.794 1.00 59.06 ATOM 13 CA THR F 469 164.933 130.697 126.725 1.00 59.06 ATOM 14 C THR F 469 164.243 129.572 125.964 1.00 59.06 ATOM 15 O THR F 469 164.583 128.394 126.122 1.00 59.06 ATOM 16 CB THR F 469 163.953 131.404 127.663 1.00 59.06 ATOM 17 OG1 THR F 469 162.774 131.772 126.937 1.00 59.06 ATOM 18 CG2 THR F 469 164.589 132.655 128.252 1.00 59.06 ATOM 19 N ILE F 470 163.280 129.923 125.117 1.00 65.04 ATOM 20 CA ILE F 470 162.683 128.968 124.190 1.00 65.04 ATOM 21 C ILE F 470 163.683 128.702 123.065 1.00 65.04 ATOM 22 O ILE F 470 163.968 129.581 122.245 1.00 65.04 ATOM 23 CB ILE F 470 161.335 129.473 123.659 1.00 65.04 ATOM 24 N ARG F 471 164.242 127.492 123.039 1.00 73.75 ATOM 25 CA ARG F 471 165.319 127.161 122.109 1.00 73.75 ATOM 26 C ARG F 471 164.732 126.957 120.719 1.00 73.75 ATOM 27 O ARG F 471 164.132 125.920 120.426 1.00 73.75 ATOM 28 CB ARG F 471 166.077 125.924 122.573 1.00 73.75 ATOM 29 CG ARG F 471 167.242 125.557 121.665 1.00 73.75 ATOM 30 CD ARG F 471 167.955 124.301 122.131 1.00 73.75 ATOM 31 NE ARG F 471 168.944 123.853 121.155 1.00 73.75 ATOM 32 CZ ARG F 471 168.677 123.043 120.135 1.00 73.75 ATOM 33 NH1 ARG F 471 167.445 122.589 119.951 1.00 73.75 ATOM 34 NH2 ARG F 471 169.642 122.690 119.297 1.00 73.75 ATOM 35 N ILE F 472 164.908 127.954 119.861 1.00 73.41 ATOM 36 CA ILE F 472 164.459 127.909 118.472 1.00 73.41 ATOM 37 C ILE F 472 165.623 127.400 117.624 1.00 73.41 ATOM 38 O ILE F 472 166.769 127.820 117.842 1.00 73.41 ATOM 39 CB ILE F 472 163.936 129.292 118.036 1.00 73.41 ATOM 40 CG1 ILE F 472 163.653 129.357 116.534 1.00 73.41 ATOM 41 CG2 ILE F 472 164.865 130.408 118.503 1.00 73.41 ATOM 42 CD1 ILE F 472 162.854 130.577 116.125 1.00 73.41 ATOM 43 N PRO F 473 165.394 126.470 116.692 1.00 72.87 ATOM 44 CA PRO F 473 166.509 125.868 115.945 1.00 72.87 ATOM 45 C PRO F 473 167.157 126.841 114.967 1.00 72.87 ATOM 46 O PRO F 473 166.701 127.966 114.751 1.00 72.87 ATOM 47 CB PRO F 473 165.853 124.697 115.207 1.00 72.87 ATOM 48 CG PRO F 473 164.625 124.395 115.995 1.00 72.87 ATOM 49 CD PRO F 473 164.141 125.722 116.490 1.00 72.87 ATOM 50 N VAL F 474 168.247 126.365 114.357 1.00 71.27 ATOM 51 CA VAL F 474 169.157 127.245 113.627 1.00 71.27 ATOM 52 C VAL F 474 168.571 127.674 112.280 1.00 71.27 ATOM 53 O VAL F 474 168.845 128.784 111.805 1.00 71.27 ATOM 54 CB VAL F 474 170.539 126.561 113.496 1.00 71.27 ATOM 55 CG1 VAL F 474 170.473 125.284 112.654 1.00 71.27 ATOM 56 CG2 VAL F 474 171.604 127.525 112.971 1.00 71.27 ATOM 57 N HIS F 475 167.723 126.842 111.666 1.00 79.89 ATOM 58 CA HIS F 475 167.119 127.222 110.392 1.00 79.89 ATOM 59 C HIS F 475 166.055 128.295 110.587 1.00 79.89 ATOM 60 O HIS F 475 165.981 129.258 109.811 1.00 79.89 ATOM 61 CB HIS F 475 166.533 125.993 109.697 1.00 79.89 ATOM 62 CG HIS F 475 165.661 125.155 110.580 1.00 79.89 ATOM 63 ND1 HIS F 475 164.299 125.346 110.678 1.00 79.89 ATOM 64 CD2 HIS F 475 165.956 124.122 111.403 1.00 79.89 ATOM 65 CE1 HIS F 475 163.794 124.467 111.525 1.00 79.89 ATOM 66 NE2 HIS F 475 164.778 123.713 111.980 1.00 79.89 ATOM 67 N MET F 476 165.244 128.164 111.639 1.00 75.37 ATOM 68 CA MET F 476 164.268 129.202 111.942 1.00 75.37 ATOM 69 C MET F 476 164.942 130.462 112.471 1.00 75.37 ATOM 70 O MET F 476 164.434 131.567 112.256 1.00 75.37 ATOM 71 CB MET F 476 163.233 128.675 112.933 1.00 75.37 ATOM 72 CG MET F 476 161.829 129.208 112.699 1.00 75.37 ATOM 73 SD MET F 476 161.190 128.771 111.069 1.00 75.37 ATOM 74 CE MET F 476 161.228 126.983 111.154 1.00 75.37 ATOM 75 N ILE F 477 166.098 130.315 113.129 1.00 74.96 ATOM 76 CA ILE F 477 166.910 131.470 113.514 1.00 74.96 ATOM 77 C ILE F 477 167.423 132.202 112.278 1.00 74.96 ATOM 78 O ILE F 477 167.402 133.438 112.218 1.00 74.96 ATOM 79 CB ILE F 477 168.054 131.019 114.450 1.00 74.96 ATOM 80 CG1 ILE F 477 167.569 130.998 115.900 1.00 74.96 ATOM 81 CG2 ILE F 477 169.306 131.894 114.321 1.00 74.96 ATOM 82 CD1 ILE F 477 167.267 132.379 116.449 1.00 74.96 ATOM 83 N GLU F 478 167.845 131.450 111.255 1.00 84.35 ATOM 84 CA GLU F 478 168.315 132.066 110.016 1.00 84.35 ATOM 85 C GLU F 478 167.181 132.769 109.276 1.00 84.35 ATOM 86 O GLU F 478 167.364 133.882 108.764 1.00 84.35 ATOM 87 CB GLU F 478 168.969 131.010 109.124 1.00 84.35 ATOM 88 CG GLU F 478 169.536 131.551 107.820 1.00 84.35 ATOM 89 CD GLU F 478 170.702 132.498 108.033 1.00 84.35 ATOM 90 OE1 GLU F 478 171.502 132.262 108.964 1.00 84.35 ATOM 91 OE2 GLU F 478 170.819 133.479 107.269 1.00 84.35 ATOM 92 N THR F 479 165.993 132.155 109.244 1.00 77.91 ATOM 93 CA THR F 479 164.864 132.793 108.568 1.00 77.91 ATOM 94 C THR F 479 164.362 134.011 109.338 1.00 77.91 ATOM 95 O THR F 479 163.959 135.005 108.726 1.00 77.91 ATOM 96 CB THR F 479 163.722 131.800 108.344 1.00 77.91 ATOM 97 OG1 THR F 479 163.274 131.283 109.601 1.00 77.91 ATOM 98 CG2 THR F 479 164.165 130.660 107.437 1.00 77.91 ATOM 99 N ILE F 480 164.409 133.981 110.673 1.00 71.24 ATOM 100 CA ILE F 480 163.964 135.156 111.417 1.00 71.24 ATOM 101 C ILE F 480 165.026 136.258 111.389 1.00 71.24 ATOM 102 O ILE F 480 164.688 137.444 111.466 1.00 71.24 ATOM 103 CB ILE F 480 163.537 134.775 112.852 1.00 71.24 ATOM 104 CG1 ILE F 480 162.605 135.840 113.439 1.00 71.24 ATOM 105 CG2 ILE F 480 164.726 134.564 113.780 1.00 71.24 ATOM 106 CD1 ILE F 480 161.375 136.110 112.602 1.00 71.24 ATOM 107 N ASN F 481 166.304 135.910 111.199 1.00 72.24 ATOM 108 CA ASN F 481 167.321 136.940 111.009 1.00 72.24 ATOM 109 C ASN F 481 167.190 137.586 109.635 1.00 72.24 ATOM 110 O ASN F 481 167.347 138.807 109.498 1.00 72.24 ATOM 111 CB ASN F 481 168.716 136.347 111.198 1.00 72.24 ATOM 112 CG ASN F 481 169.139 136.304 112.653 1.00 72.24 ATOM 113 OD1 ASN F 481 169.541 135.260 113.165 1.00 72.24 ATOM 114 ND2 ASN F 481 169.052 137.445 113.328 1.00 72.24 ATOM 115 N LYS F 482 166.880 136.782 108.612 1.00 75.26 ATOM 116 CA LYS F 482 166.590 137.335 107.293 1.00 75.26 ATOM 117 C LYS F 482 165.322 138.182 107.315 1.00 75.26 ATOM 118 O LYS F 482 165.245 139.210 106.634 1.00 75.26 ATOM 119 CB LYS F 482 166.463 136.211 106.266 1.00 75.26 ATOM 120 CG LYS F 482 167.777 135.551 105.893 1.00 75.26 ATOM 121 CD LYS F 482 167.563 134.420 104.900 1.00 75.26 ATOM 122 CE LYS F 482 166.918 134.924 103.619 1.00 75.26 ATOM 123 NZ LYS F 482 167.762 135.942 102.936 1.00 75.26 ATOM 124 N LEU F 483 164.329 137.779 108.114 1.00 72.48 ATOM 125 CA LEU F 483 163.103 138.560 108.246 1.00 72.48 ATOM 126 C LEU F 483 163.364 139.879 108.964 1.00 72.48 ATOM 127 O LEU F 483 162.785 140.908 108.602 1.00 72.48 ATOM 128 CB LEU F 483 162.039 137.735 108.976 1.00 72.48 ATOM 129 CG LEU F 483 160.573 138.192 109.027 1.00 72.48 ATOM 130 CD1 LEU F 483 159.675 136.971 109.015 1.00 72.48 ATOM 131 CD2 LEU F 483 160.254 139.037 110.258 1.00 72.48 ATOM 132 N ASN F 484 164.240 139.870 109.974 1.00 74.10 ATOM 133 CA ASN F 484 164.608 141.108 110.656 1.00 74.10 ATOM 134 C ASN F 484 165.390 142.038 109.736 1.00 74.10 ATOM 135 O ASN F 484 165.189 143.258 109.764 1.00 74.10 ATOM 136 CB ASN F 484 165.416 140.795 111.915 1.00 74.10 ATOM 137 CG ASN F 484 164.556 140.258 113.041 1.00 74.10 ATOM 138 OD1 ASN F 484 163.431 139.809 112.819 1.00 74.10 ATOM 139 ND2 ASN F 484 165.081 140.303 114.260 1.00 74.10 ATOM 140 N ARG F 485 166.266 141.477 108.895 1.00 78.64 ATOM 141 CA ARG F 485 167.009 142.299 107.941 1.00 78.64 ATOM 142 C ARG F 485 166.092 142.878 106.866 1.00 78.64 ATOM 143 O ARG F 485 166.245 144.042 106.474 1.00 78.64 ATOM 144 CB ARG F 485 168.132 141.477 107.309 1.00 78.64 ATOM 145 CG ARG F 485 169.109 142.290 106.477 1.00 78.64 ATOM 146 CD ARG F 485 170.265 141.434 105.978 1.00 78.64 ATOM 147 NE ARG F 485 169.852 140.506 104.929 1.00 78.64 ATOM 148 CZ ARG F 485 169.690 139.198 105.108 1.00 78.64 ATOM 149 NH1 ARG F 485 169.313 138.431 104.095 1.00 78.64 ATOM 150 NH2 ARG F 485 169.907 138.658 106.299 1.00 78.64 ATOM 151 N ILE F 486 165.118 142.091 106.401 1.00 80.54 ATOM 152 CA ILE F 486 164.156 142.578 105.414 1.00 80.54 ATOM 153 C ILE F 486 163.241 143.633 106.033 1.00 80.54 ATOM 154 O ILE F 486 162.898 144.632 105.388 1.00 80.54 ATOM 155 CB ILE F 486 163.379 141.383 104.819 1.00 80.54 ATOM 156 CG1 ILE F 486 164.266 140.611 103.839 1.00 80.54 ATOM 157 CG2 ILE F 486 162.108 141.809 104.093 1.00 80.54 ATOM 158 CD1 ILE F 486 164.759 141.440 102.672 1.00 80.54 ATOM 159 N SER F 487 162.886 143.464 107.312 1.00 81.34 ATOM 160 CA SER F 487 162.073 144.460 108.005 1.00 81.34 ATOM 161 C SER F 487 162.842 145.757 108.221 1.00 81.34 ATOM 162 O SER F 487 162.270 146.846 108.104 1.00 81.34 ATOM 163 CB SER F 487 161.584 143.899 109.340 1.00 81.34 ATOM 164 OG SER F 487 162.612 143.939 110.316 1.00 81.34 ATOM 165 N ARG F 488 164.145 145.663 108.507 1.00 75.71 ATOM 166 CA ARG F 488 164.969 146.864 108.618 1.00 75.71 ATOM 167 C ARG F 488 165.126 147.554 107.267 1.00 75.71 ATOM 168 O ARG F 488 165.110 148.790 107.190 1.00 75.71 ATOM 169 CB ARG F 488 166.337 146.514 109.205 1.00 75.71 ATOM 170 CG ARG F 488 166.321 146.237 110.700 1.00 75.71 ATOM 171 CD ARG F 488 167.681 145.760 111.188 1.00 75.71 ATOM 172 NE ARG F 488 167.656 145.377 112.597 1.00 75.71 ATOM 173 CZ ARG F 488 168.696 144.869 113.251 1.00 75.71 ATOM 174 NH1 ARG F 488 169.849 144.683 112.623 1.00 75.71 ATOM 175 NH2 ARG F 488 168.584 144.546 114.532 1.00 75.71 ATOM 176 N GLN F 489 165.246 146.771 106.188 1.00 79.49 ATOM 177 CA GLN F 489 165.349 147.348 104.850 1.00 79.49 ATOM 178 C GLN F 489 164.055 148.043 104.438 1.00 79.49 ATOM 179 O GLN F 489 164.089 149.128 103.847 1.00 79.49 ATOM 180 CB GLN F 489 165.720 146.262 103.840 1.00 79.49 ATOM 181 CG GLN F 489 166.008 146.785 102.442 1.00 79.49 ATOM 182 CD GLN F 489 165.913 145.705 101.384 1.00 79.49 ATOM 183 OE1 GLN F 489 165.380 144.623 101.631 1.00 79.49 ATOM 184 NE2 GLN F 489 166.431 145.993 100.196 1.00 79.49 ATOM 185 N MET F 490 162.904 147.447 104.757 1.00 79.55 ATOM 186 CA MET F 490 161.629 148.094 104.463 1.00 79.55 ATOM 187 C MET F 490 161.354 149.283 105.374 1.00 79.55 ATOM 188 O MET F 490 160.652 150.211 104.957 1.00 79.55 ATOM 189 CB MET F 490 160.485 147.082 104.549 1.00 79.55 ATOM 190 CG MET F 490 160.546 145.965 103.508 1.00 79.55 ATOM 191 SD MET F 490 160.472 146.549 101.798 1.00 79.55 ATOM 192 CE MET F 490 162.165 146.317 101.250 1.00 79.55 ATOM 193 N LEU F 491 161.893 149.281 106.597 1.00 79.10 ATOM 194 CA LEU F 491 161.843 150.474 107.437 1.00 79.10 ATOM 195 C LEU F 491 162.656 151.605 106.822 1.00 79.10 ATOM 196 O LEU F 491 162.219 152.762 106.807 1.00 79.10 ATOM 197 CB LEU F 491 162.356 150.150 108.842 1.00 79.10 ATOM 198 CG LEU F 491 161.368 149.594 109.867 1.00 79.10 ATOM 199 CD1 LEU F 491 162.096 148.756 110.905 1.00 79.10 ATOM 200 CD2 LEU F 491 160.606 150.724 110.540 1.00 79.10 ATOM 201 N GLN F 492 163.842 151.284 106.299 1.00 85.63 ATOM 202 CA GLN F 492 164.680 152.302 105.672 1.00 85.63 ATOM 203 C GLN F 492 164.107 152.778 104.341 1.00 85.63 ATOM 204 O GLN F 492 164.331 153.929 103.949 1.00 85.63 ATOM 205 CB GLN F 492 166.094 151.762 105.480 1.00 85.63 ATOM 206 CG GLN F 492 166.831 151.537 106.783 1.00 85.63 ATOM 207 CD GLN F 492 167.049 152.822 107.547 1.00 85.63 ATOM 208 OE1 GLN F 492 167.701 153.740 107.056 1.00 85.63 ATOM 209 NE2 GLN F 492 166.504 152.895 108.754 1.00 85.63 ATOM 210 N GLU F 493 163.374 151.917 103.637 1.00 86.61 ATOM 211 CA GLU F 493 162.798 152.282 102.349 1.00 86.61 ATOM 212 C GLU F 493 161.427 152.936 102.462 1.00 86.61 ATOM 213 O GLU F 493 160.997 153.599 101.512 1.00 86.61 ATOM 214 CB GLU F 493 162.689 151.047 101.448 1.00 86.61 ATOM 215 CG GLU F 493 164.006 150.591 100.837 1.00 86.61 ATOM 216 CD GLU F 493 164.398 151.399 99.614 1.00 86.61 ATOM 217 OE1 GLU F 493 163.527 152.101 99.057 1.00 86.61 ATOM 218 OE2 GLU F 493 165.576 151.326 99.205 1.00 86.61 ATOM 219 N MET F 494 160.732 152.768 103.586 1.00 76.86 ATOM 220 CA MET F 494 159.391 153.317 103.750 1.00 76.86 ATOM 221 C MET F 494 159.304 154.337 104.874 1.00 76.86 ATOM 222 O MET F 494 158.754 155.426 104.673 1.00 76.86 ATOM 223 CB MET F 494 158.388 152.178 103.998 1.00 76.86 ATOM 224 CG MET F 494 156.952 152.639 104.180 1.00 76.86 ATOM 225 SD MET F 494 155.790 151.263 104.275 1.00 76.86 ATOM 226 CE MET F 494 156.001 150.529 102.655 1.00 76.86 ATOM 227 N GLY F 495 159.834 154.020 106.052 1.00 78.06 ATOM 228 CA GLY F 495 159.718 154.907 107.193 1.00 78.06 ATOM 229 C GLY F 495 158.646 154.458 108.163 1.00 78.06 ATOM 230 O GLY F 495 158.786 154.621 109.379 1.00 78.06 ATOM 231 N ARG F 496 157.568 153.888 107.631 1.00 73.09 ATOM 232 CA ARG F 496 156.487 153.367 108.450 1.00 73.09 ATOM 233 C ARG F 496 156.874 152.011 109.040 1.00 73.09 ATOM 234 O ARG F 496 157.907 151.427 108.703 1.00 73.09 ATOM 235 CB ARG F 496 155.207 153.246 107.623 1.00 73.09 ATOM 236 CG ARG F 496 153.939 153.659 108.356 1.00 73.09 ATOM 237 CD ARG F 496 152.711 153.426 107.492 1.00 73.09 ATOM 238 NE ARG F 496 152.601 152.034 107.064 1.00 73.09 ATOM 239 CZ ARG F 496 151.720 151.594 106.172 1.00 73.09 ATOM 240 NH1 ARG F 496 151.692 150.310 105.842 1.00 73.09 ATOM 241 NH2 ARG F 496 150.868 152.438 105.607 1.00 73.09 ATOM 242 N GLU F 497 156.026 151.515 109.938 1.00 79.28 ATOM 243 CA GLU F 497 156.254 150.208 110.536 1.00 79.28 ATOM 244 C GLU F 497 156.012 149.109 109.501 1.00 79.28 ATOM 245 O GLU F 497 155.074 149.205 108.703 1.00 79.28 ATOM 246 CB GLU F 497 155.342 150.002 111.745 1.00 79.28 ATOM 247 CG GLU F 497 155.801 150.729 112.998 1.00 79.28 ATOM 248 CD GLU F 497 154.709 150.831 114.045 1.00 79.28 ATOM 249 OE1 GLU F 497 153.732 151.575 113.817 1.00 79.28 ATOM 250 OE2 GLU F 497 154.828 150.166 115.096 1.00 79.28 ATOM 251 N PRO F 498 156.842 148.065 109.481 1.00 80.43 ATOM 252 CA PRO F 498 156.712 147.030 108.441 1.00 80.43 ATOM 253 C PRO F 498 155.513 146.126 108.693 1.00 80.43 ATOM 254 O PRO F 498 155.411 145.475 109.735 1.00 80.43 ATOM 255 CB PRO F 498 158.035 146.260 108.538 1.00 80.43 ATOM 256 CG PRO F 498 158.521 146.501 109.927 1.00 80.43 ATOM 257 CD PRO F 498 158.037 147.865 110.321 1.00 80.43 ATOM 258 N THR F 499 154.599 146.098 107.728 1.00 70.32 ATOM 259 CA THR F 499 153.478 145.177 107.779 1.00 70.32 ATOM 260 C THR F 499 153.956 143.766 107.434 1.00 70.32 ATOM 261 O THR F 499 154.972 143.600 106.755 1.00 70.32 ATOM 262 CB THR F 499 152.383 145.621 106.808 1.00 70.32 ATOM 263 OG1 THR F 499 152.866 145.527 105.462 1.00 70.32 ATOM 264 CG2 THR F 499 151.968 147.057 107.094 1.00 70.32 TER