HEADER TRANSFERASE/DNA/RNA 31-DEC-69 7N4E TITLE Escherichia coli sigma 70-dependent paused transcription elongation TITLE 2 complex COMPND MOL_ID: 7; COMPND 2 MOLECULE: RNA polymerase sigma factor RpoD; COMPND 3 CHAIN: F; COMPND 4 MUTATION: YES; COMPND 5 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 7N4E F 1 613 UNP Q0P6L9 Q0P6L9_ECOL 1 613 SEQRES 1 F 32 MET LEU GLN GLU MET GLY ARG GLU PRO THR PRO GLU GLU SEQRES 2 F 32 LEU ALA GLU ARG MET LEU MET PRO GLU ASP LYS ILE ARG SEQRES 3 F 32 LYS VAL LEU LYS ILE ALA ATOM 1 N MET F 470 141.257 195.018 184.644 1.00111.80 ATOM 2 CA MET F 470 140.877 195.829 183.492 1.00111.80 ATOM 3 C MET F 470 140.314 194.980 182.358 1.00111.80 ATOM 4 O MET F 470 139.384 195.412 181.668 1.00111.80 ATOM 5 CB MET F 470 142.076 196.640 183.007 1.00111.80 ATOM 6 CG MET F 470 141.720 197.751 182.037 1.00111.80 ATOM 7 SD MET F 470 141.115 199.224 182.877 1.00111.80 ATOM 8 CE MET F 470 141.096 200.399 181.526 1.00111.80 ATOM 9 N LEU F 471 140.864 193.783 182.143 1.00108.94 ATOM 10 CA LEU F 471 140.321 192.879 181.135 1.00108.94 ATOM 11 C LEU F 471 138.892 192.486 181.477 1.00108.94 ATOM 12 O LEU F 471 138.015 192.455 180.606 1.00108.94 ATOM 13 CB LEU F 471 141.209 191.639 181.018 1.00108.94 ATOM 14 CG LEU F 471 140.649 190.422 180.279 1.00108.94 ATOM 15 CD1 LEU F 471 140.651 190.648 178.779 1.00108.94 ATOM 16 CD2 LEU F 471 141.435 189.169 180.636 1.00108.94 ATOM 17 N GLN F 472 138.640 192.183 182.751 1.00112.61 ATOM 18 CA GLN F 472 137.279 191.916 183.199 1.00112.61 ATOM 19 C GLN F 472 136.373 193.131 183.035 1.00112.61 ATOM 20 O GLN F 472 135.218 192.988 182.617 1.00112.61 ATOM 21 CB GLN F 472 137.305 191.450 184.654 1.00112.61 ATOM 22 CG GLN F 472 135.980 191.546 185.372 1.00112.61 ATOM 23 CD GLN F 472 135.925 192.766 186.270 1.00112.61 ATOM 24 OE1 GLN F 472 136.950 193.209 186.791 1.00112.61 ATOM 25 NE2 GLN F 472 134.737 193.328 186.440 1.00112.61 ATOM 26 N GLU F 473 136.873 194.325 183.351 1.00115.93 ATOM 27 CA GLU F 473 136.044 195.524 183.328 1.00115.93 ATOM 28 C GLU F 473 135.671 195.960 181.916 1.00115.93 ATOM 29 O GLU F 473 134.517 196.333 181.675 1.00115.93 ATOM 30 CB GLU F 473 136.767 196.663 184.048 1.00115.93 ATOM 31 CG GLU F 473 135.850 197.643 184.757 1.00115.93 ATOM 32 CD GLU F 473 136.606 198.812 185.355 1.00115.93 ATOM 33 OE1 GLU F 473 137.822 198.929 185.096 1.00115.93 ATOM 34 OE2 GLU F 473 135.986 199.613 186.085 1.00115.93 ATOM 35 N MET F 474 136.615 195.919 180.977 1.00114.05 ATOM 36 CA MET F 474 136.402 196.465 179.645 1.00114.05 ATOM 37 C MET F 474 136.036 195.410 178.609 1.00114.05 ATOM 38 O MET F 474 135.526 195.764 177.540 1.00114.05 ATOM 39 CB MET F 474 137.660 197.227 179.191 1.00114.05 ATOM 40 CG MET F 474 137.538 197.958 177.864 1.00114.05 ATOM 41 SD MET F 474 136.301 199.265 177.923 1.00114.05 ATOM 42 CE MET F 474 137.142 200.480 178.935 1.00114.05 ATOM 43 N GLY F 475 136.240 194.130 178.906 1.00111.55 ATOM 44 CA GLY F 475 135.977 193.086 177.938 1.00111.55 ATOM 45 C GLY F 475 137.085 192.842 176.941 1.00111.55 ATOM 46 O GLY F 475 136.892 192.060 176.003 1.00111.55 ATOM 47 N ARG F 476 138.238 193.482 177.113 1.00123.35 ATOM 48 CA ARG F 476 139.372 193.300 176.218 1.00123.35 ATOM 49 C ARG F 476 140.651 193.559 176.998 1.00123.35 ATOM 50 O ARG F 476 140.633 194.172 178.069 1.00123.35 ATOM 51 CB ARG F 476 139.282 194.226 175.000 1.00123.35 ATOM 52 CG ARG F 476 139.190 195.694 175.360 1.00123.35 ATOM 53 CD ARG F 476 139.288 196.574 174.130 1.00123.35 ATOM 54 NE ARG F 476 139.514 197.969 174.486 1.00123.35 ATOM 55 CZ ARG F 476 140.696 198.481 174.801 1.00123.35 ATOM 56 NH1 ARG F 476 141.788 197.736 174.823 1.00123.35 ATOM 57 NH2 ARG F 476 140.782 199.773 175.105 1.00123.35 ATOM 58 N GLU F 477 141.762 193.073 176.450 1.00124.14 ATOM 59 CA GLU F 477 143.043 193.220 177.120 1.00124.14 ATOM 60 C GLU F 477 143.476 194.687 177.144 1.00124.14 ATOM 61 O GLU F 477 143.212 195.441 176.203 1.00124.14 ATOM 62 CB GLU F 477 144.110 192.366 176.438 1.00124.14 ATOM 63 CG GLU F 477 144.559 192.870 175.076 1.00124.14 ATOM 64 CD GLU F 477 143.552 192.570 173.983 1.00124.14 ATOM 65 OE1 GLU F 477 142.639 191.753 174.224 1.00124.14 ATOM 66 OE2 GLU F 477 143.670 193.154 172.886 1.00124.14 ATOM 67 N PRO F 478 144.122 195.118 178.221 1.00123.27 ATOM 68 CA PRO F 478 144.559 196.512 178.322 1.00123.27 ATOM 69 C PRO F 478 145.699 196.827 177.366 1.00123.27 ATOM 70 O PRO F 478 146.410 195.947 176.878 1.00123.27 ATOM 71 CB PRO F 478 145.031 196.628 179.776 1.00123.27 ATOM 72 CG PRO F 478 144.294 195.558 180.495 1.00123.27 ATOM 73 CD PRO F 478 144.198 194.424 179.517 1.00123.27 ATOM 74 N THR F 479 145.857 198.116 177.103 1.00111.72 ATOM 75 CA THR F 479 147.010 198.635 176.385 1.00111.72 ATOM 76 C THR F 479 148.021 199.197 177.369 1.00111.72 ATOM 77 O THR F 479 147.706 199.449 178.535 1.00111.72 ATOM 78 CB THR F 479 146.567 199.706 175.392 1.00111.72 ATOM 79 OG1 THR F 479 146.366 200.945 176.083 1.00111.72 ATOM 80 CG2 THR F 479 145.272 199.294 174.710 1.00111.72 ATOM 81 N PRO F 480 149.269 199.391 176.933 1.00102.64 ATOM 82 CA PRO F 480 150.277 199.940 177.854 1.00102.64 ATOM 83 C PRO F 480 149.913 201.309 178.403 1.00102.64 ATOM 84 O PRO F 480 150.211 201.594 179.570 1.00102.64 ATOM 85 CB PRO F 480 151.547 199.997 176.994 1.00102.64 ATOM 86 CG PRO F 480 151.596 198.675 176.300 1.00102.64 ATOM 87 N GLU F 481 149.269 202.161 177.604 1.00109.44 ATOM 88 CA GLU F 481 148.915 203.494 178.080 1.00109.44 ATOM 89 C GLU F 481 147.842 203.432 179.160 1.00109.44 ATOM 90 O GLU F 481 147.900 204.177 180.146 1.00109.44 ATOM 91 CB GLU F 481 148.454 204.362 176.911 1.00109.44 ATOM 92 CG GLU F 481 148.045 205.765 177.315 1.00109.44 ATOM 93 CD GLU F 481 149.060 206.418 178.231 1.00109.44 ATOM 94 OE1 GLU F 481 150.250 206.476 177.855 1.00109.44 ATOM 95 OE2 GLU F 481 148.670 206.871 179.327 1.00109.44 ATOM 96 N GLU F 482 146.849 202.558 178.990 1.00114.48 ATOM 97 CA GLU F 482 145.819 202.403 180.012 1.00114.48 ATOM 98 C GLU F 482 146.412 201.879 181.315 1.00114.48 ATOM 99 O GLU F 482 146.033 202.326 182.406 1.00114.48 ATOM 100 CB GLU F 482 144.720 201.471 179.504 1.00114.48 ATOM 101 CG GLU F 482 143.994 201.991 178.276 1.00114.48 ATOM 102 CD GLU F 482 143.238 200.903 177.541 1.00114.48 ATOM 103 OE1 GLU F 482 143.242 199.748 178.016 1.00114.48 ATOM 104 OE2 GLU F 482 142.641 201.202 176.485 1.00114.48 ATOM 105 N LEU F 483 147.340 200.924 181.219 1.00111.04 ATOM 106 CA LEU F 483 148.012 200.425 182.412 1.00111.04 ATOM 107 C LEU F 483 148.849 201.514 183.067 1.00111.04 ATOM 108 O LEU F 483 148.942 201.575 184.297 1.00111.04 ATOM 109 CB LEU F 483 148.874 199.214 182.063 1.00111.04 ATOM 110 CG LEU F 483 148.092 197.983 181.605 1.00111.04 ATOM 111 CD1 LEU F 483 149.035 196.883 181.149 1.00111.04 ATOM 112 CD2 LEU F 483 147.177 197.492 182.717 1.00111.04 ATOM 113 N ALA F 484 149.471 202.380 182.264 1.00103.81 ATOM 114 CA ALA F 484 150.180 203.522 182.832 1.00103.81 ATOM 115 C ALA F 484 149.230 204.460 183.563 1.00103.81 ATOM 116 O ALA F 484 149.563 204.965 184.641 1.00103.81 ATOM 117 CB ALA F 484 150.930 204.274 181.734 1.00103.81 ATOM 118 N GLU F 485 148.052 204.701 182.990 1.00105.38 ATOM 119 CA GLU F 485 147.077 205.585 183.620 1.00105.38 ATOM 120 C GLU F 485 146.592 205.015 184.948 1.00105.38 ATOM 121 O GLU F 485 146.472 205.741 185.942 1.00105.38 ATOM 122 CB GLU F 485 145.898 205.809 182.674 1.00105.38 ATOM 123 CG GLU F 485 146.201 206.727 181.504 1.00105.38 ATOM 124 CD GLU F 485 145.240 206.523 180.350 1.00105.38 ATOM 125 OE1 GLU F 485 144.391 205.611 180.437 1.00105.38 ATOM 126 OE2 GLU F 485 145.335 207.271 179.355 1.00105.38 ATOM 127 N ARG F 486 146.309 203.712 184.983 1.00111.02 ATOM 128 CA ARG F 486 145.696 203.106 186.161 1.00111.02 ATOM 129 C ARG F 486 146.708 202.623 187.194 1.00111.02 ATOM 130 O ARG F 486 146.324 202.361 188.340 1.00111.02 ATOM 131 CB ARG F 486 144.804 201.935 185.737 1.00111.02 ATOM 132 CG ARG F 486 143.831 201.460 186.806 1.00111.02 ATOM 133 CD ARG F 486 142.611 200.792 186.204 1.00111.02 ATOM 134 NE ARG F 486 141.689 201.759 185.624 1.00111.02 ATOM 135 CZ ARG F 486 140.425 201.498 185.323 1.00111.02 ATOM 136 NH1 ARG F 486 139.898 200.301 185.529 1.00111.02 ATOM 137 NH2 ARG F 486 139.669 202.461 184.803 1.00111.02 ATOM 138 N MET F 487 147.985 202.508 186.833 1.00112.10 ATOM 139 CA MET F 487 148.919 201.775 187.681 1.00112.10 ATOM 140 C MET F 487 149.434 202.601 188.853 1.00112.10 ATOM 141 O MET F 487 149.154 202.290 190.015 1.00112.10 ATOM 142 CB MET F 487 150.089 201.265 186.841 1.00112.10 ATOM 143 CG MET F 487 151.090 200.475 187.645 1.00112.10 ATOM 144 SD MET F 487 151.797 199.132 186.697 1.00112.10 ATOM 145 CE MET F 487 150.641 197.865 187.183 1.00112.10 ATOM 146 N LEU F 488 150.181 203.664 188.570 1.00114.65 ATOM 147 CA LEU F 488 150.932 204.334 189.620 1.00114.65 ATOM 148 C LEU F 488 151.209 205.770 189.209 1.00114.65 ATOM 149 O LEU F 488 151.124 206.130 188.032 1.00114.65 ATOM 150 CB LEU F 488 152.247 203.599 189.916 1.00114.65 ATOM 151 CG LEU F 488 152.234 202.489 190.970 1.00114.65 ATOM 152 CD1 LEU F 488 153.535 201.704 190.935 1.00114.65 ATOM 153 CD2 LEU F 488 151.988 203.058 192.357 1.00114.65 ATOM 154 N MET F 489 151.546 206.589 190.201 1.00116.23 ATOM 155 CA MET F 489 151.901 207.979 189.949 1.00116.23 ATOM 156 C MET F 489 153.317 208.152 189.386 1.00116.23 ATOM 157 O MET F 489 153.512 209.044 188.550 1.00116.23 ATOM 158 CB MET F 489 151.694 208.825 191.217 1.00116.23 ATOM 159 CG MET F 489 152.671 208.612 192.362 1.00116.23 ATOM 160 SD MET F 489 152.816 210.041 193.449 1.00116.23 ATOM 161 CE MET F 489 151.490 209.714 194.608 1.00116.23 ATOM 162 N PRO F 490 154.330 207.362 189.774 1.00113.41 ATOM 163 CA PRO F 490 155.651 207.545 189.163 1.00113.41 ATOM 164 C PRO F 490 155.896 206.707 187.919 1.00113.41 ATOM 165 O PRO F 490 156.876 206.967 187.207 1.00113.41 ATOM 166 CB PRO F 490 156.596 207.121 190.292 1.00113.41 ATOM 167 CG PRO F 490 155.875 206.003 190.936 1.00113.41 ATOM 168 CD PRO F 490 154.390 206.282 190.783 1.00113.41 ATOM 169 N GLU F 491 155.049 205.720 187.638 1.00105.99 ATOM 170 CA GLU F 491 155.270 204.830 186.509 1.00105.99 ATOM 171 C GLU F 491 154.637 205.393 185.244 1.00105.99 ATOM 172 O GLU F 491 153.518 205.912 185.266 1.00105.99 ATOM 173 CB GLU F 491 154.701 203.442 186.805 1.00105.99 ATOM 174 CG GLU F 491 155.459 202.681 187.880 1.00105.99 ATOM 175 CD GLU F 491 155.222 201.187 187.813 1.00105.99 ATOM 176 OE1 GLU F 491 154.461 200.746 186.927 1.00105.99 ATOM 177 OE2 GLU F 491 155.794 200.453 188.646 1.00105.99 ATOM 178 N ASP F 492 155.367 205.283 184.136 1.00102.03 ATOM 179 CA ASP F 492 154.864 205.704 182.835 1.00102.03 ATOM 180 C ASP F 492 154.963 204.551 181.845 1.00102.03 ATOM 181 O ASP F 492 155.239 203.414 182.241 1.00102.03 ATOM 182 CB ASP F 492 155.629 206.928 182.326 1.00102.03 ATOM 183 CG ASP F 492 157.127 206.703 182.272 1.00102.03 ATOM 184 OD1 ASP F 492 157.591 205.634 182.718 1.00102.03 ATOM 185 OD2 ASP F 492 157.843 207.601 181.783 1.00102.03 ATOM 186 N LYS F 493 154.734 204.830 180.559 1.00 94.62 ATOM 187 CA LYS F 493 154.713 203.761 179.565 1.00 94.62 ATOM 188 C LYS F 493 156.066 203.065 179.467 1.00 94.62 ATOM 189 O LYS F 493 156.134 201.831 179.419 1.00 94.62 ATOM 190 CB LYS F 493 154.293 204.321 178.205 1.00 94.62 ATOM 191 CG LYS F 493 153.970 203.263 177.154 1.00 94.62 ATOM 192 CD LYS F 493 155.163 202.950 176.262 1.00 94.62 ATOM 193 CE LYS F 493 154.792 201.942 175.184 1.00 94.62 ATOM 194 NZ LYS F 493 155.955 201.590 174.325 1.00 94.62 ATOM 195 N ILE F 494 157.154 203.838 179.445 1.00 95.65 ATOM 196 CA ILE F 494 158.474 203.245 179.251 1.00 95.65 ATOM 197 C ILE F 494 158.889 202.414 180.458 1.00 95.65 ATOM 198 O ILE F 494 159.494 201.345 180.302 1.00 95.65 ATOM 199 CB ILE F 494 159.512 204.337 178.936 1.00 95.65 ATOM 200 CG1 ILE F 494 159.468 205.442 179.990 1.00 95.65 ATOM 201 CG2 ILE F 494 159.273 204.911 177.550 1.00 95.65 ATOM 202 CD1 ILE F 494 160.599 206.436 179.875 1.00 95.65 ATOM 203 N ARG F 495 158.581 202.877 181.672 1.00 96.50 ATOM 204 CA ARG F 495 158.991 202.142 182.863 1.00 96.50 ATOM 205 C ARG F 495 158.360 200.756 182.895 1.00 96.50 ATOM 206 O ARG F 495 159.054 199.753 183.091 1.00 96.50 ATOM 207 CB ARG F 495 158.632 202.931 184.123 1.00 96.50 ATOM 208 CG ARG F 495 159.422 202.511 185.355 1.00 96.50 ATOM 209 CD ARG F 495 158.923 203.208 186.613 1.00 96.50 ATOM 210 NE ARG F 495 159.583 202.701 187.810 1.00 96.50 ATOM 211 CZ ARG F 495 159.226 203.004 189.051 1.00 96.50 ATOM 212 NH1 ARG F 495 158.214 203.819 189.300 1.00 96.50 ATOM 213 NH2 ARG F 495 159.903 202.478 190.068 1.00 96.50 ATOM 214 N LYS F 496 157.047 200.675 182.671 1.00 94.63 ATOM 215 CA LYS F 496 156.389 199.375 182.684 1.00 94.63 ATOM 216 C LYS F 496 156.700 198.554 181.442 1.00 94.63 ATOM 217 O LYS F 496 156.691 197.321 181.517 1.00 94.63 ATOM 218 CB LYS F 496 154.880 199.541 182.837 1.00 94.63 ATOM 219 CG LYS F 496 154.227 200.401 181.782 1.00 94.63 ATOM 220 CD LYS F 496 152.757 200.563 182.101 1.00 94.63 ATOM 221 CE LYS F 496 152.579 201.071 183.522 1.00 94.63 ATOM 222 NZ LYS F 496 153.277 202.368 183.739 1.00 94.63 ATOM 223 N VAL F 497 156.974 199.201 180.306 1.00 86.85 ATOM 224 CA VAL F 497 157.443 198.455 179.144 1.00 86.85 ATOM 225 C VAL F 497 158.752 197.755 179.470 1.00 86.85 ATOM 226 O VAL F 497 158.954 196.591 179.102 1.00 86.85 ATOM 227 CB VAL F 497 157.588 199.388 177.929 1.00 86.85 ATOM 228 CG1 VAL F 497 157.584 198.582 176.641 1.00 86.85 ATOM 229 N LEU F 498 159.657 198.443 180.168 1.00 88.80 ATOM 230 CA LEU F 498 160.853 197.786 180.680 1.00 88.80 ATOM 231 C LEU F 498 160.505 196.728 181.718 1.00 88.80 ATOM 232 O LEU F 498 161.203 195.713 181.823 1.00 88.80 ATOM 233 CB LEU F 498 161.805 198.821 181.279 1.00 88.80 ATOM 234 CG LEU F 498 162.505 199.751 180.289 1.00 88.80 ATOM 235 CD1 LEU F 498 163.565 200.578 180.995 1.00 88.80 ATOM 236 CD2 LEU F 498 163.115 198.953 179.148 1.00 88.80 ATOM 237 N LYS F 499 159.439 196.945 182.492 1.00 88.11 ATOM 238 CA LYS F 499 159.044 195.971 183.502 1.00 88.11 ATOM 239 C LYS F 499 158.520 194.678 182.894 1.00 88.11 ATOM 240 O LYS F 499 158.509 193.650 183.578 1.00 88.11 ATOM 241 CB LYS F 499 157.991 196.565 184.439 1.00 88.11 ATOM 242 CG LYS F 499 158.510 197.695 185.313 1.00 88.11 ATOM 243 CD LYS F 499 158.528 197.306 186.780 1.00 88.11 ATOM 244 CE LYS F 499 159.219 198.364 187.628 1.00 88.11 ATOM 245 NZ LYS F 499 159.299 197.968 189.063 1.00 88.11 ATOM 246 N ILE F 500 158.097 194.697 181.632 1.00 80.16 ATOM 247 CA ILE F 500 157.645 193.477 180.974 1.00 80.16 ATOM 248 C ILE F 500 158.863 192.719 180.463 1.00 80.16 ATOM 249 O ILE F 500 159.310 192.925 179.329 1.00 80.16 ATOM 250 CB ILE F 500 156.658 193.781 179.833 1.00 80.16 ATOM 251 CG1 ILE F 500 155.509 194.649 180.346 1.00 80.16 ATOM 252 CG2 ILE F 500 156.119 192.490 179.239 1.00 80.16 ATOM 253 CD1 ILE F 500 154.404 194.860 179.338 1.00 80.16 ATOM 254 N ALA F 501 159.395 191.840 181.310 1.00 66.19 ATOM 255 CA ALA F 501 160.565 191.029 180.978 1.00 66.19 ATOM 256 C ALA F 501 161.710 191.863 180.407 1.00 66.19 ATOM 257 O ALA F 501 162.543 192.382 181.150 1.00 66.19 ATOM 258 CB ALA F 501 160.187 189.907 180.020 1.00 66.19 TER