HEADER RIBOSOME 31-DEC-69 7SYG TITLE Structure of the HCV IRES binding to the 40S ribosomal subunit, TITLE 2 closed conformation. Structure 1(delta dII) COMPND MOL_ID: 35; COMPND 2 MOLECULE: 60s ribosomal protein l41; COMPND 3 CHAIN: n; EXPDTA ELECTRON MICROSCOPY DBREF 7SYG n 1 25 UNP A0A087WN A0A087WNH4_ 1 25 SEQRES 1 n 25 MET ARG ALA LYS TRP ARG LYS LYS ARG MET ARG ARG LEU SEQRES 2 n 25 LYS ARG LYS ARG ARG LYS MET ARG GLN ARG SER LYS ATOM 1 N MET n 1 196.764 216.738 194.427 1.00 68.50 ATOM 2 CA MET n 1 197.635 216.349 193.325 1.00 68.50 ATOM 3 C MET n 1 196.864 215.537 192.292 1.00 68.50 ATOM 4 O MET n 1 197.114 214.346 192.113 1.00 68.50 ATOM 5 CB MET n 1 198.830 215.544 193.841 1.00 68.50 ATOM 6 CG MET n 1 200.062 215.606 192.952 1.00 68.50 ATOM 7 SD MET n 1 200.418 217.275 192.373 1.00 68.50 ATOM 8 CE MET n 1 201.537 216.932 191.018 1.00 68.50 ATOM 9 N ARG n 2 195.916 216.186 191.622 1.00 57.72 ATOM 10 CA ARG n 2 195.162 215.520 190.573 1.00 57.72 ATOM 11 C ARG n 2 196.016 215.372 189.316 1.00 57.72 ATOM 12 O ARG n 2 197.056 216.017 189.155 1.00 57.72 ATOM 13 CB ARG n 2 193.880 216.289 190.259 1.00 57.72 ATOM 14 CG ARG n 2 194.071 217.786 190.124 1.00 57.72 ATOM 15 CD ARG n 2 192.745 218.523 190.214 1.00 57.72 ATOM 16 NE ARG n 2 191.948 218.368 189.003 1.00 57.72 ATOM 17 CZ ARG n 2 190.889 219.108 188.703 1.00 57.72 ATOM 18 NH1 ARG n 2 190.470 220.072 189.506 1.00 57.72 ATOM 19 NH2 ARG n 2 190.235 218.875 187.569 1.00 57.72 ATOM 20 N ALA n 3 195.557 214.501 188.414 1.00 57.85 ATOM 21 CA ALA n 3 196.327 214.184 187.217 1.00 57.85 ATOM 22 C ALA n 3 196.318 215.308 186.188 1.00 57.85 ATOM 23 O ALA n 3 197.162 215.302 185.287 1.00 57.85 ATOM 24 CB ALA n 3 195.798 212.898 186.581 1.00 57.85 ATOM 25 N LYS n 4 195.402 216.272 186.310 1.00 53.56 ATOM 26 CA LYS n 4 195.304 217.351 185.331 1.00 53.56 ATOM 27 C LYS n 4 196.503 218.291 185.417 1.00 53.56 ATOM 28 O LYS n 4 197.235 218.480 184.438 1.00 53.56 ATOM 29 CB LYS n 4 193.999 218.120 185.536 1.00 53.56 ATOM 30 CG LYS n 4 193.655 219.070 184.407 1.00 53.56 ATOM 31 CD LYS n 4 192.240 219.599 184.551 1.00 53.56 ATOM 32 CE LYS n 4 191.807 220.346 183.305 1.00 53.56 ATOM 33 NZ LYS n 4 190.365 220.711 183.346 1.00 53.56 ATOM 34 N TRP n 5 196.736 218.880 186.591 1.00 57.18 ATOM 35 CA TRP n 5 197.887 219.760 186.739 1.00 57.18 ATOM 36 C TRP n 5 199.198 218.991 186.823 1.00 57.18 ATOM 37 O TRP n 5 200.252 219.564 186.525 1.00 57.18 ATOM 38 CB TRP n 5 197.715 220.662 187.965 1.00 57.18 ATOM 39 CG TRP n 5 196.285 221.070 188.260 1.00 57.18 ATOM 40 CD1 TRP n 5 195.624 220.895 189.439 1.00 57.18 ATOM 41 CD2 TRP n 5 195.353 221.723 187.375 1.00 57.18 ATOM 42 NE1 TRP n 5 194.347 221.389 189.349 1.00 57.18 ATOM 43 CE2 TRP n 5 194.154 221.901 188.094 1.00 57.18 ATOM 44 CE3 TRP n 5 195.415 222.175 186.050 1.00 57.18 ATOM 45 CZ2 TRP n 5 193.030 222.505 187.534 1.00 57.18 ATOM 46 CZ3 TRP n 5 194.295 222.767 185.495 1.00 57.18 ATOM 47 CH2 TRP n 5 193.121 222.931 186.238 1.00 57.18 ATOM 48 N ARG n 6 199.149 217.707 187.192 1.00 57.55 ATOM 49 CA ARG n 6 200.323 216.849 187.064 1.00 57.55 ATOM 50 C ARG n 6 200.728 216.693 185.604 1.00 57.55 ATOM 51 O ARG n 6 201.912 216.806 185.265 1.00 57.55 ATOM 52 CB ARG n 6 200.047 215.484 187.693 1.00 57.55 ATOM 53 CG ARG n 6 201.296 214.676 187.994 1.00 57.55 ATOM 54 CD ARG n 6 201.046 213.185 187.819 1.00 57.55 ATOM 55 NE ARG n 6 201.423 212.709 186.493 1.00 57.55 ATOM 56 CZ ARG n 6 202.662 212.414 186.122 1.00 57.55 ATOM 57 NH1 ARG n 6 203.680 212.522 186.961 1.00 57.55 ATOM 58 NH2 ARG n 6 202.885 211.995 184.880 1.00 57.55 ATOM 59 N LYS n 7 199.752 216.471 184.718 1.00 56.15 ATOM 60 CA LYS n 7 200.046 216.422 183.291 1.00 56.15 ATOM 61 C LYS n 7 200.441 217.790 182.750 1.00 56.15 ATOM 62 O LYS n 7 201.238 217.870 181.811 1.00 56.15 ATOM 63 CB LYS n 7 198.844 215.873 182.523 1.00 56.15 ATOM 64 CG LYS n 7 198.847 214.360 182.368 1.00 56.15 ATOM 65 CD LYS n 7 197.542 213.856 181.774 1.00 56.15 ATOM 66 CE LYS n 7 197.273 214.484 180.415 1.00 56.15 ATOM 67 NZ LYS n 7 195.977 214.033 179.840 1.00 56.15 ATOM 68 N LYS n 8 199.911 218.868 183.336 1.00 59.58 ATOM 69 CA LYS n 8 200.287 220.216 182.910 1.00 59.58 ATOM 70 C LYS n 8 201.749 220.521 183.231 1.00 59.58 ATOM 71 O LYS n 8 202.490 221.028 182.378 1.00 59.58 ATOM 72 CB LYS n 8 199.366 221.247 183.564 1.00 59.58 ATOM 73 CG LYS n 8 199.591 222.671 183.082 1.00 59.58 ATOM 74 CD LYS n 8 198.555 223.622 183.656 1.00 59.58 ATOM 75 CE LYS n 8 198.663 225.001 183.027 1.00 59.58 ATOM 76 NZ LYS n 8 198.332 224.975 181.576 1.00 59.58 ATOM 77 N ARG n 9 202.190 220.206 184.454 1.00 64.37 ATOM 78 CA ARG n 9 203.594 220.424 184.794 1.00 64.37 ATOM 79 C ARG n 9 204.500 219.414 184.096 1.00 64.37 ATOM 80 O ARG n 9 205.663 219.727 183.811 1.00 64.37 ATOM 81 CB ARG n 9 203.796 220.392 186.313 1.00 64.37 ATOM 82 CG ARG n 9 203.535 219.057 186.986 1.00 64.37 ATOM 83 CD ARG n 9 203.054 219.238 188.416 1.00 64.37 ATOM 84 NE ARG n 9 204.047 219.900 189.253 1.00 64.37 ATOM 85 CZ ARG n 9 205.025 219.274 189.894 1.00 64.37 ATOM 86 NH1 ARG n 9 205.173 217.961 189.816 1.00 64.37 ATOM 87 NH2 ARG n 9 205.875 219.982 190.631 1.00 64.37 ATOM 88 N MET n 10 203.973 218.225 183.773 1.00 64.11 ATOM 89 CA MET n 10 204.695 217.278 182.928 1.00 64.11 ATOM 90 C MET n 10 204.930 217.856 181.536 1.00 64.11 ATOM 91 O MET n 10 206.032 217.744 180.991 1.00 64.11 ATOM 92 CB MET n 10 203.903 215.968 182.855 1.00 64.11 ATOM 93 CG MET n 10 204.655 214.684 182.465 1.00 64.11 ATOM 94 SD MET n 10 205.352 214.585 180.803 1.00 64.11 ATOM 95 CE MET n 10 203.899 214.100 179.881 1.00 64.11 ATOM 96 N ARG n 11 203.907 218.487 180.953 1.00 66.37 ATOM 97 CA ARG n 11 204.052 219.093 179.633 1.00 66.37 ATOM 98 C ARG n 11 204.972 220.304 179.665 1.00 66.37 ATOM 99 O ARG n 11 205.714 220.536 178.705 1.00 66.37 ATOM 100 CB ARG n 11 202.683 219.484 179.079 1.00 66.37 ATOM 101 CG ARG n 11 201.859 218.305 178.600 1.00 66.37 ATOM 102 CD ARG n 11 200.591 218.760 177.898 1.00 66.37 ATOM 103 NE ARG n 11 199.559 217.729 177.913 1.00 66.37 ATOM 104 CZ ARG n 11 199.507 216.704 177.074 1.00 66.37 ATOM 105 NH1 ARG n 11 200.415 216.539 176.126 1.00 66.37 ATOM 106 NH2 ARG n 11 198.518 215.822 177.187 1.00 66.37 ATOM 107 N ARG n 12 204.940 221.077 180.756 1.00 70.43 ATOM 108 CA ARG n 12 205.875 222.191 180.910 1.00 70.43 ATOM 109 C ARG n 12 207.318 221.700 181.006 1.00 70.43 ATOM 110 O ARG n 12 208.218 222.269 180.372 1.00 70.43 ATOM 111 CB ARG n 12 205.505 223.015 182.144 1.00 70.43 ATOM 112 CG ARG n 12 204.244 223.852 181.985 1.00 70.43 ATOM 113 CD ARG n 12 204.033 224.765 183.184 1.00 70.43 ATOM 114 NE ARG n 12 202.900 225.664 182.999 1.00 70.43 ATOM 115 CZ ARG n 12 202.593 226.663 183.815 1.00 70.43 ATOM 116 NH1 ARG n 12 203.320 226.926 184.889 1.00 70.43 ATOM 117 NH2 ARG n 12 201.528 227.415 183.550 1.00 70.43 ATOM 118 N LEU n 13 207.550 220.627 181.773 1.00 75.58 ATOM 119 CA LEU n 13 208.888 220.052 181.882 1.00 75.58 ATOM 120 C LEU n 13 209.336 219.442 180.556 1.00 75.58 ATOM 121 O LEU n 13 210.516 219.526 180.199 1.00 75.58 ATOM 122 CB LEU n 13 208.911 219.018 183.017 1.00 75.58 ATOM 123 CG LEU n 13 210.186 218.335 183.537 1.00 75.58 ATOM 124 CD1 LEU n 13 209.965 217.944 184.988 1.00 75.58 ATOM 125 CD2 LEU n 13 210.585 217.093 182.744 1.00 75.58 ATOM 126 N LYS n 14 208.407 218.828 179.817 1.00 78.07 ATOM 127 CA LYS n 14 208.732 218.256 178.513 1.00 78.07 ATOM 128 C LYS n 14 209.076 219.340 177.498 1.00 78.07 ATOM 129 O LYS n 14 209.995 219.168 176.690 1.00 78.07 ATOM 130 CB LYS n 14 207.564 217.404 178.014 1.00 78.07 ATOM 131 CG LYS n 14 207.857 216.609 176.753 1.00 78.07 ATOM 132 CD LYS n 14 206.591 215.973 176.200 1.00 78.07 ATOM 133 CE LYS n 14 206.853 215.288 174.869 1.00 78.07 ATOM 134 NZ LYS n 14 205.607 214.725 174.279 1.00 78.07 ATOM 135 N ARG n 15 208.351 220.463 177.531 1.00 80.05 ATOM 136 CA ARG n 15 208.666 221.596 176.665 1.00 80.05 ATOM 137 C ARG n 15 210.023 222.198 177.011 1.00 80.05 ATOM 138 O ARG n 15 210.792 222.565 176.112 1.00 80.05 ATOM 139 CB ARG n 15 207.563 222.650 176.773 1.00 80.05 ATOM 140 CG ARG n 15 207.724 223.835 175.837 1.00 80.05 ATOM 141 CD ARG n 15 206.371 224.393 175.420 1.00 80.05 ATOM 142 NE ARG n 15 205.602 224.883 176.559 1.00 80.05 ATOM 143 CZ ARG n 15 204.288 224.759 176.683 1.00 80.05 ATOM 144 NH1 ARG n 15 203.559 224.158 175.757 1.00 80.05 ATOM 145 NH2 ARG n 15 203.689 225.252 177.764 1.00 80.05 ATOM 146 N LYS n 16 210.333 222.295 178.310 1.00 84.21 ATOM 147 CA LYS n 16 211.643 222.782 178.739 1.00 84.21 ATOM 148 C LYS n 16 212.764 221.850 178.287 1.00 84.21 ATOM 149 O LYS n 16 213.804 222.313 177.800 1.00 84.21 ATOM 150 CB LYS n 16 211.659 222.946 180.260 1.00 84.21 ATOM 151 CG LYS n 16 213.022 223.275 180.849 1.00 84.21 ATOM 152 CD LYS n 16 213.125 222.822 182.297 1.00 84.21 ATOM 153 CE LYS n 16 212.081 223.498 183.169 1.00 84.21 ATOM 154 NZ LYS n 16 212.259 223.146 184.603 1.00 84.21 ATOM 155 N ARG n 17 212.558 220.534 178.419 1.00 89.43 ATOM 156 CA ARG n 17 213.554 219.557 177.984 1.00 89.43 ATOM 157 C ARG n 17 213.741 219.579 176.471 1.00 89.43 ATOM 158 O ARG n 17 214.868 219.448 175.981 1.00 89.43 ATOM 159 CB ARG n 17 213.153 218.158 178.449 1.00 89.43 ATOM 160 CG ARG n 17 213.414 217.890 179.920 1.00 89.43 ATOM 161 CD ARG n 17 214.734 217.165 180.124 1.00 89.43 ATOM 162 NE ARG n 17 214.693 215.800 179.610 1.00 89.43 ATOM 163 CZ ARG n 17 214.207 214.761 180.276 1.00 89.43 ATOM 164 NH1 ARG n 17 213.706 214.892 181.494 1.00 89.43 ATOM 165 NH2 ARG n 17 214.226 213.560 179.706 1.00 89.43 ATOM 166 N ARG n 18 212.645 219.746 175.721 1.00 91.93 ATOM 167 CA ARG n 18 212.729 219.848 174.267 1.00 91.93 ATOM 168 C ARG n 18 213.481 221.103 173.842 1.00 91.93 ATOM 169 O ARG n 18 214.300 221.058 172.916 1.00 91.93 ATOM 170 CB ARG n 18 211.324 219.828 173.664 1.00 91.93 ATOM 171 CG ARG n 18 211.282 219.904 172.145 1.00 91.93 ATOM 172 CD ARG n 18 209.898 220.298 171.649 1.00 91.93 ATOM 173 NE ARG n 18 208.911 219.248 171.874 1.00 91.93 ATOM 174 CZ ARG n 18 207.915 219.328 172.745 1.00 91.93 ATOM 175 NH1 ARG n 18 207.745 220.398 173.503 1.00 91.93 ATOM 176 NH2 ARG n 18 207.071 218.307 172.861 1.00 91.93 ATOM 177 N LYS n 19 213.236 222.225 174.527 1.00 97.83 ATOM 178 CA LYS n 19 213.953 223.458 174.213 1.00 97.83 ATOM 179 C LYS n 19 215.437 223.352 174.550 1.00 97.83 ATOM 180 O LYS n 19 216.284 223.828 173.784 1.00 97.83 ATOM 181 CB LYS n 19 213.314 224.636 174.946 1.00 97.83 ATOM 182 CG LYS n 19 212.231 225.337 174.145 1.00 97.83 ATOM 183 CD LYS n 19 212.833 226.342 173.177 1.00 97.83 ATOM 184 CE LYS n 19 211.756 227.035 172.360 1.00 97.83 ATOM 185 NZ LYS n 19 211.265 226.173 171.250 1.00 97.83 ATOM 186 N MET n 20 215.775 222.716 175.679 1.00107.91 ATOM 187 CA MET n 20 217.183 222.545 176.037 1.00107.91 ATOM 188 C MET n 20 217.900 221.589 175.088 1.00107.91 ATOM 189 O MET n 20 219.050 221.837 174.709 1.00107.91 ATOM 190 CB MET n 20 217.323 222.067 177.483 1.00107.91 ATOM 191 CG MET n 20 216.885 223.085 178.523 1.00107.91 ATOM 192 SD MET n 20 216.991 222.450 180.206 1.00107.91 ATOM 193 CE MET n 20 218.767 222.375 180.425 1.00107.91 ATOM 194 N ARG n 21 217.245 220.495 174.685 1.00 98.63 ATOM 195 CA ARG n 21 217.889 219.575 173.755 1.00 98.63 ATOM 196 C ARG n 21 217.922 220.121 172.332 1.00 98.63 ATOM 197 O ARG n 21 218.738 219.661 171.527 1.00 98.63 ATOM 198 CB ARG n 21 217.202 218.206 173.794 1.00 98.63 ATOM 199 CG ARG n 21 215.863 218.126 173.083 1.00 98.63 ATOM 200 CD ARG n 21 215.326 216.704 173.098 1.00 98.63 ATOM 201 NE ARG n 21 215.508 216.071 174.399 1.00 98.63 ATOM 202 CZ ARG n 21 214.589 216.043 175.355 1.00 98.63 ATOM 203 NH1 ARG n 21 213.398 216.591 175.185 1.00 98.63 ATOM 204 NH2 ARG n 21 214.871 215.443 176.508 1.00 98.63 ATOM 205 N GLN n 22 217.059 221.087 172.001 1.00113.20 ATOM 206 CA GLN n 22 217.203 221.799 170.736 1.00113.20 ATOM 207 C GLN n 22 218.350 222.803 170.794 1.00113.20 ATOM 208 O GLN n 22 219.111 222.937 169.829 1.00113.20 ATOM 209 CB GLN n 22 215.891 222.498 170.376 1.00113.20 ATOM 210 CG GLN n 22 215.911 223.210 169.033 1.00113.20 ATOM 211 CD GLN n 22 216.425 222.325 167.914 1.00113.20 ATOM 212 OE1 GLN n 22 215.899 221.238 167.675 1.00113.20 ATOM 213 NE2 GLN n 22 217.462 222.785 167.225 1.00113.20 ATOM 214 N ARG n 23 218.496 223.505 171.921 1.00116.76 ATOM 215 CA ARG n 23 219.576 224.475 172.069 1.00116.76 ATOM 216 C ARG n 23 220.931 223.815 172.296 1.00116.76 ATOM 217 O ARG n 23 221.960 224.486 172.163 1.00116.76 ATOM 218 CB ARG n 23 219.272 225.429 173.226 1.00116.76 ATOM 219 CG ARG n 23 218.367 226.593 172.861 1.00116.76 ATOM 220 CD ARG n 23 217.446 226.952 174.016 1.00116.76 ATOM 221 NE ARG n 23 218.128 226.871 175.302 1.00116.76 ATOM 222 CZ ARG n 23 217.586 226.377 176.407 1.00116.76 ATOM 223 NH1 ARG n 23 216.349 225.910 176.422 1.00116.76 ATOM 224 NH2 ARG n 23 218.305 226.352 177.526 1.00116.76 ATOM 225 N SER n 24 220.956 222.524 172.636 1.00131.47 ATOM 226 CA SER n 24 222.211 221.825 172.887 1.00131.47 ATOM 227 C SER n 24 223.003 221.537 171.617 1.00131.47 ATOM 228 O SER n 24 224.181 221.178 171.714 1.00131.47 ATOM 229 CB SER n 24 221.938 220.515 173.630 1.00131.47 ATOM 230 OG SER n 24 223.145 219.902 174.045 1.00131.47 ATOM 231 N LYS n 25 222.395 221.677 170.442 1.00139.56 ATOM 232 CA LYS n 25 223.095 221.461 169.181 1.00139.56 ATOM 233 C LYS n 25 224.050 222.612 168.880 1.00139.56 ATOM 234 O LYS n 25 225.157 222.400 168.385 1.00139.56 ATOM 235 CB LYS n 25 222.094 221.295 168.035 1.00139.56 ATOM 236 CG LYS n 25 221.112 220.150 168.226 1.00139.56 ATOM 237 CD LYS n 25 221.833 218.827 168.428 1.00139.56 ATOM 238 CE LYS n 25 220.851 217.694 168.678 1.00139.56 ATOM 239 NZ LYS n 25 221.544 216.390 168.869 1.00139.56 TER