HEADER TRANSCRIPTION/DNA 31-DEC-69 7VWZ TITLE Cryo-EM structure of Rob-dependent transcription activation complex TITLE 2 in a unique conformation COMPND MOL_ID: 5; COMPND 2 MOLECULE: RNA polymerase sigma factor RpoD; COMPND 3 CHAIN: F; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU F 477 REMARK 465 PRO F 478 REMARK 465 THR F 479 DBREF 7VWZ F 1 613 UNP P00579 RPOD_ECOLI 1 613 SEQRES 1 F 32 ARG THR ILE ARG ILE PRO VAL HIS MET ILE GLU THR ILE SEQRES 2 F 32 ASN LYS LEU ASN ARG ILE SER ARG GLN MET LEU GLN GLU SEQRES 3 F 32 MET GLY ARG GLU PRO THR ATOM 1 N ARG F 448 160.314 137.303 112.658 1.00 91.24 ATOM 2 CA ARG F 448 159.536 136.089 112.833 1.00 91.24 ATOM 3 C ARG F 448 160.084 135.389 114.071 1.00 91.24 ATOM 4 O ARG F 448 161.216 135.638 114.491 1.00 91.24 ATOM 5 CB ARG F 448 159.575 135.185 111.586 1.00 91.24 ATOM 6 CG ARG F 448 158.402 134.209 111.491 1.00 91.24 ATOM 7 CD ARG F 448 158.379 133.418 110.191 1.00 91.24 ATOM 8 NE ARG F 448 158.128 134.226 109.000 1.00 91.24 ATOM 9 CZ ARG F 448 158.159 133.741 107.758 1.00 91.24 ATOM 10 NH1 ARG F 448 158.406 132.455 107.563 1.00 91.24 ATOM 11 NH2 ARG F 448 157.939 134.531 106.715 1.00 91.24 ATOM 12 N THR F 449 159.248 134.545 114.679 1.00 92.18 ATOM 13 CA THR F 449 159.603 133.873 115.927 1.00 92.18 ATOM 14 C THR F 449 160.703 132.842 115.706 1.00 92.18 ATOM 15 O THR F 449 161.718 132.832 116.412 1.00 92.18 ATOM 16 CB THR F 449 158.368 133.197 116.509 1.00 92.18 ATOM 17 OG1 THR F 449 158.084 132.019 115.745 1.00 92.18 ATOM 18 CG2 THR F 449 157.180 134.122 116.429 1.00 92.18 ATOM 19 N ILE F 450 160.486 131.929 114.762 1.00 91.88 ATOM 20 CA ILE F 450 161.568 131.105 114.252 1.00 91.88 ATOM 21 C ILE F 450 162.364 131.928 113.244 1.00 91.88 ATOM 22 O ILE F 450 161.885 132.950 112.727 1.00 91.88 ATOM 23 CB ILE F 450 160.994 129.825 113.618 1.00 91.88 ATOM 24 CG1 ILE F 450 160.350 130.140 112.270 1.00 91.88 ATOM 25 CG2 ILE F 450 159.935 129.224 114.519 1.00 91.88 ATOM 26 CD1 ILE F 450 159.766 128.942 111.564 1.00 91.88 ATOM 27 N ARG F 451 163.599 131.514 112.975 1.00 95.55 ATOM 28 CA ARG F 451 164.303 132.093 111.843 1.00 95.55 ATOM 29 C ARG F 451 164.041 131.237 110.618 1.00 95.55 ATOM 30 O ARG F 451 164.030 130.006 110.690 1.00 95.55 ATOM 31 CB ARG F 451 165.813 132.213 112.081 1.00 95.55 ATOM 32 CG ARG F 451 166.556 132.919 110.912 1.00 95.55 ATOM 33 CD ARG F 451 168.024 133.204 111.153 1.00 95.55 ATOM 34 NE ARG F 451 168.838 131.994 111.152 1.00 95.55 ATOM 35 CZ ARG F 451 169.474 131.510 110.088 1.00 95.55 ATOM 36 NH1 ARG F 451 169.410 132.133 108.921 1.00 95.55 ATOM 37 NH2 ARG F 451 170.192 130.406 110.198 1.00 95.55 ATOM 38 N ILE F 452 163.802 131.903 109.493 1.00 95.82 ATOM 39 CA ILE F 452 163.659 131.210 108.215 1.00 95.82 ATOM 40 C ILE F 452 164.669 131.773 107.228 1.00 95.82 ATOM 41 O ILE F 452 164.984 132.971 107.242 1.00 95.82 ATOM 42 CB ILE F 452 162.215 131.334 107.666 1.00 95.82 ATOM 43 CG1 ILE F 452 161.973 130.402 106.485 1.00 95.82 ATOM 44 CG2 ILE F 452 161.804 132.799 107.388 1.00 95.82 ATOM 45 CD1 ILE F 452 160.550 130.098 106.276 1.00 95.82 ATOM 46 N PRO F 453 165.297 130.899 106.446 1.00 97.11 ATOM 47 CA PRO F 453 166.298 131.359 105.481 1.00 97.11 ATOM 48 C PRO F 453 165.685 132.186 104.356 1.00 97.11 ATOM 49 O PRO F 453 164.484 132.146 104.089 1.00 97.11 ATOM 50 CB PRO F 453 166.893 130.057 104.948 1.00 97.11 ATOM 51 CG PRO F 453 166.759 129.114 106.068 1.00 97.11 ATOM 52 CD PRO F 453 165.454 129.460 106.730 1.00 97.11 ATOM 53 N VAL F 454 166.560 132.946 103.690 1.00 97.10 ATOM 54 CA VAL F 454 166.134 133.862 102.640 1.00 97.10 ATOM 55 C VAL F 454 165.729 133.114 101.375 1.00 97.10 ATOM 56 O VAL F 454 164.999 133.657 100.540 1.00 97.10 ATOM 57 CB VAL F 454 167.254 134.894 102.375 1.00 97.10 ATOM 58 CG1 VAL F 454 168.412 134.265 101.620 1.00 97.10 ATOM 59 CG2 VAL F 454 166.726 136.132 101.657 1.00 97.10 ATOM 60 N HIS F 455 166.148 131.858 101.228 1.00107.45 ATOM 61 CA HIS F 455 165.723 131.058 100.088 1.00107.45 ATOM 62 C HIS F 455 164.257 130.667 100.176 1.00107.45 ATOM 63 O HIS F 455 163.673 130.269 99.166 1.00107.45 ATOM 64 CB HIS F 455 166.589 129.808 99.971 1.00107.45 ATOM 65 CG HIS F 455 168.005 130.033 100.379 1.00107.45 ATOM 66 ND1 HIS F 455 168.750 131.093 99.913 1.00107.45 ATOM 67 CD2 HIS F 455 168.811 129.347 101.222 1.00107.45 ATOM 68 CE1 HIS F 455 169.955 131.049 100.447 1.00107.45 ATOM 69 NE2 HIS F 455 170.018 130.000 101.247 1.00107.45 ATOM 70 N MET F 456 163.661 130.738 101.362 1.00105.30 ATOM 71 CA MET F 456 162.209 130.694 101.433 1.00105.30 ATOM 72 C MET F 456 161.608 132.064 101.165 1.00105.30 ATOM 73 O MET F 456 160.519 132.162 100.596 1.00105.30 ATOM 74 CB MET F 456 161.773 130.153 102.787 1.00105.30 ATOM 75 CG MET F 456 161.530 128.660 102.778 1.00105.30 ATOM 76 SD MET F 456 162.965 127.716 102.261 1.00105.30 ATOM 77 CE MET F 456 164.036 127.928 103.678 1.00105.30 ATOM 78 N ILE F 457 162.323 133.129 101.520 1.00106.77 ATOM 79 CA ILE F 457 161.871 134.477 101.203 1.00106.77 ATOM 80 C ILE F 457 162.032 134.791 99.709 1.00106.77 ATOM 81 O ILE F 457 161.453 135.762 99.218 1.00106.77 ATOM 82 CB ILE F 457 162.620 135.468 102.115 1.00106.77 ATOM 83 CG1 ILE F 457 162.691 134.921 103.549 1.00106.77 ATOM 84 CG2 ILE F 457 161.911 136.812 102.194 1.00106.77 ATOM 85 CD1 ILE F 457 161.345 134.838 104.282 1.00106.77 ATOM 86 N GLU F 458 162.779 133.989 98.949 1.00113.75 ATOM 87 CA GLU F 458 162.767 134.223 97.508 1.00113.75 ATOM 88 C GLU F 458 161.652 133.452 96.813 1.00113.75 ATOM 89 O GLU F 458 161.264 133.819 95.699 1.00113.75 ATOM 90 CB GLU F 458 164.123 133.891 96.877 1.00113.75 ATOM 91 CG GLU F 458 164.511 132.429 96.896 1.00113.75 ATOM 92 CD GLU F 458 164.214 131.693 95.604 1.00113.75 ATOM 93 OE1 GLU F 458 164.252 132.324 94.528 1.00113.75 ATOM 94 OE2 GLU F 458 163.923 130.481 95.673 1.00113.75 ATOM 95 N THR F 459 161.100 132.411 97.439 1.00111.26 ATOM 96 CA THR F 459 160.079 131.630 96.751 1.00111.26 ATOM 97 C THR F 459 158.663 131.843 97.271 1.00111.26 ATOM 98 O THR F 459 157.719 131.693 96.488 1.00111.26 ATOM 99 CB THR F 459 160.407 130.136 96.800 1.00111.26 ATOM 100 OG1 THR F 459 159.332 129.401 96.203 1.00111.26 ATOM 101 CG2 THR F 459 160.600 129.657 98.222 1.00111.26 ATOM 102 N ILE F 460 158.479 132.205 98.545 1.00110.13 ATOM 103 CA ILE F 460 157.134 132.268 99.116 1.00110.13 ATOM 104 C ILE F 460 156.375 133.469 98.573 1.00110.13 ATOM 105 O ILE F 460 155.237 133.344 98.109 1.00110.13 ATOM 106 CB ILE F 460 157.201 132.283 100.656 1.00110.13 ATOM 107 CG1 ILE F 460 157.473 130.880 101.179 1.00110.13 ATOM 108 CG2 ILE F 460 155.902 132.807 101.267 1.00110.13 ATOM 109 CD1 ILE F 460 158.152 130.847 102.510 1.00110.13 ATOM 110 N ASN F 461 157.003 134.642 98.605 1.00115.90 ATOM 111 CA ASN F 461 156.448 135.833 97.981 1.00115.90 ATOM 112 C ASN F 461 156.280 135.684 96.477 1.00115.90 ATOM 113 O ASN F 461 155.357 136.277 95.914 1.00115.90 ATOM 114 CB ASN F 461 157.350 137.027 98.272 1.00115.90 ATOM 115 CG ASN F 461 158.798 136.742 97.936 1.00115.90 ATOM 116 OD1 ASN F 461 159.149 135.628 97.537 1.00115.90 ATOM 117 ND2 ASN F 461 159.648 137.748 98.083 1.00115.90 ATOM 118 N LYS F 462 157.158 134.917 95.825 1.00113.00 ATOM 119 CA LYS F 462 156.991 134.604 94.409 1.00113.00 ATOM 120 C LYS F 462 155.723 133.791 94.182 1.00113.00 ATOM 121 O LYS F 462 154.989 134.016 93.216 1.00113.00 ATOM 122 CB LYS F 462 158.218 133.846 93.908 1.00113.00 ATOM 123 CG LYS F 462 158.221 133.524 92.436 1.00113.00 ATOM 124 CD LYS F 462 159.362 132.583 92.112 1.00113.00 ATOM 125 CE LYS F 462 159.772 132.686 90.656 1.00113.00 ATOM 126 NZ LYS F 462 161.030 131.944 90.385 1.00113.00 ATOM 127 N LEU F 463 155.448 132.844 95.079 1.00116.58 ATOM 128 CA LEU F 463 154.175 132.133 95.062 1.00116.58 ATOM 129 C LEU F 463 153.012 133.052 95.416 1.00116.58 ATOM 130 O LEU F 463 151.893 132.852 94.927 1.00116.58 ATOM 131 CB LEU F 463 154.246 130.946 96.023 1.00116.58 ATOM 132 CG LEU F 463 155.114 129.800 95.500 1.00116.58 ATOM 133 CD1 LEU F 463 155.678 128.966 96.623 1.00116.58 ATOM 134 CD2 LEU F 463 154.299 128.925 94.568 1.00116.58 ATOM 135 N ASN F 464 153.246 134.059 96.263 1.00124.92 ATOM 136 CA ASN F 464 152.239 135.097 96.455 1.00124.92 ATOM 137 C ASN F 464 152.107 135.962 95.209 1.00124.92 ATOM 138 O ASN F 464 150.994 136.323 94.808 1.00124.92 ATOM 139 CB ASN F 464 152.582 135.969 97.666 1.00124.92 ATOM 140 CG ASN F 464 152.010 135.427 98.960 1.00124.92 ATOM 141 OD1 ASN F 464 152.743 135.165 99.917 1.00124.92 ATOM 142 ND2 ASN F 464 150.691 135.275 99.005 1.00124.92 ATOM 143 N ARG F 465 153.244 136.316 94.590 1.00129.26 ATOM 144 CA ARG F 465 153.215 137.174 93.408 1.00129.26 ATOM 145 C ARG F 465 152.561 136.474 92.231 1.00129.26 ATOM 146 O ARG F 465 151.829 137.104 91.461 1.00129.26 ATOM 147 CB ARG F 465 154.621 137.629 93.009 1.00129.26 ATOM 148 CG ARG F 465 155.179 138.806 93.802 1.00129.26 ATOM 149 CD ARG F 465 156.424 139.392 93.140 1.00129.26 ATOM 150 NE ARG F 465 157.379 138.347 92.786 1.00129.26 ATOM 151 CZ ARG F 465 158.633 138.560 92.403 1.00129.26 ATOM 152 NH1 ARG F 465 159.119 139.791 92.354 1.00129.26 ATOM 153 NH2 ARG F 465 159.412 137.530 92.104 1.00129.26 ATOM 154 N ILE F 466 152.797 135.170 92.085 1.00132.70 ATOM 155 CA ILE F 466 152.297 134.477 90.907 1.00132.70 ATOM 156 C ILE F 466 150.786 134.280 90.981 1.00132.70 ATOM 157 O ILE F 466 150.127 134.208 89.943 1.00132.70 ATOM 158 CB ILE F 466 153.044 133.143 90.705 1.00132.70 ATOM 159 CG1 ILE F 466 152.904 132.657 89.264 1.00132.70 ATOM 160 CG2 ILE F 466 152.577 132.071 91.689 1.00132.70 ATOM 161 CD1 ILE F 466 153.898 133.255 88.286 1.00132.70 ATOM 162 N SER F 467 150.201 134.276 92.183 1.00129.19 ATOM 163 CA SER F 467 148.804 133.875 92.322 1.00129.19 ATOM 164 C SER F 467 147.852 134.987 91.907 1.00129.19 ATOM 165 O SER F 467 146.920 134.756 91.127 1.00129.19 ATOM 166 CB SER F 467 148.515 133.446 93.754 1.00129.19 ATOM 167 OG SER F 467 147.154 133.086 93.881 1.00129.19 ATOM 168 N ARG F 468 148.039 136.193 92.455 1.00145.05 ATOM 169 CA ARG F 468 147.202 137.315 92.046 1.00145.05 ATOM 170 C ARG F 468 147.489 137.709 90.607 1.00145.05 ATOM 171 O ARG F 468 146.610 138.242 89.918 1.00145.05 ATOM 172 CB ARG F 468 147.411 138.509 92.972 1.00145.05 ATOM 173 CG ARG F 468 147.704 138.163 94.404 1.00145.05 ATOM 174 CD ARG F 468 148.559 139.234 95.041 1.00145.05 ATOM 175 NE ARG F 468 149.904 139.280 94.480 1.00145.05 ATOM 176 CZ ARG F 468 150.766 140.272 94.675 1.00145.05 ATOM 177 NH1 ARG F 468 150.430 141.326 95.409 1.00145.05 ATOM 178 NH2 ARG F 468 151.969 140.218 94.124 1.00145.05 ATOM 179 N GLN F 469 148.712 137.454 90.147 1.00145.52 ATOM 180 CA GLN F 469 149.002 137.458 88.722 1.00145.52 ATOM 181 C GLN F 469 148.160 136.413 87.995 1.00145.52 ATOM 182 O GLN F 469 147.530 136.711 86.977 1.00145.52 ATOM 183 CB GLN F 469 150.498 137.225 88.527 1.00145.52 ATOM 184 CG GLN F 469 150.991 136.876 87.139 1.00145.52 ATOM 185 CD GLN F 469 152.424 136.367 87.196 1.00145.52 ATOM 186 OE1 GLN F 469 153.067 136.439 88.240 1.00145.52 ATOM 187 NE2 GLN F 469 152.924 135.844 86.079 1.00145.52 ATOM 188 N MET F 470 148.110 135.184 88.526 1.00146.48 ATOM 189 CA MET F 470 147.349 134.116 87.877 1.00146.48 ATOM 190 C MET F 470 145.846 134.261 88.058 1.00146.48 ATOM 191 O MET F 470 145.090 133.712 87.253 1.00146.48 ATOM 192 CB MET F 470 147.760 132.741 88.408 1.00146.48 ATOM 193 CG MET F 470 148.892 132.072 87.645 1.00146.48 ATOM 194 SD MET F 470 148.430 131.662 85.947 1.00146.48 ATOM 195 CE MET F 470 149.494 130.253 85.636 1.00146.48 ATOM 196 N LEU F 471 145.396 134.950 89.110 1.00144.39 ATOM 197 CA LEU F 471 143.963 135.139 89.313 1.00144.39 ATOM 198 C LEU F 471 143.378 136.070 88.261 1.00144.39 ATOM 199 O LEU F 471 142.211 135.929 87.876 1.00144.39 ATOM 200 CB LEU F 471 143.708 135.683 90.717 1.00144.39 ATOM 201 CG LEU F 471 142.269 135.877 91.186 1.00144.39 ATOM 202 CD1 LEU F 471 142.100 135.298 92.581 1.00144.39 ATOM 203 CD2 LEU F 471 141.901 137.353 91.159 1.00144.39 ATOM 204 N GLN F 472 144.174 137.041 87.804 1.00160.47 ATOM 205 CA GLN F 472 143.781 137.875 86.674 1.00160.47 ATOM 206 C GLN F 472 143.617 137.038 85.416 1.00160.47 ATOM 207 O GLN F 472 142.694 137.263 84.622 1.00160.47 ATOM 208 CB GLN F 472 144.818 138.987 86.470 1.00160.47 ATOM 209 CG GLN F 472 145.034 139.457 85.033 1.00160.47 ATOM 210 CD GLN F 472 146.024 140.602 84.939 1.00160.47 ATOM 211 OE1 GLN F 472 146.622 140.996 85.938 1.00160.47 ATOM 212 NE2 GLN F 472 146.190 141.154 83.736 1.00160.47 ATOM 213 N GLU F 473 144.475 136.033 85.249 1.00162.82 ATOM 214 CA GLU F 473 144.461 135.216 84.043 1.00162.82 ATOM 215 C GLU F 473 143.293 134.237 84.048 1.00162.82 ATOM 216 O GLU F 473 142.500 134.200 83.100 1.00162.82 ATOM 217 CB GLU F 473 145.797 134.483 83.907 1.00162.82 ATOM 218 CG GLU F 473 146.992 135.414 84.057 1.00162.82 ATOM 219 CD GLU F 473 148.331 134.716 83.949 1.00162.82 ATOM 220 OE1 GLU F 473 148.398 133.617 83.351 1.00162.82 ATOM 221 OE2 GLU F 473 149.323 135.275 84.463 1.00162.82 ATOM 222 N MET F 474 143.164 133.431 85.106 1.00156.41 ATOM 223 CA MET F 474 142.172 132.361 85.053 1.00156.41 ATOM 224 C MET F 474 140.786 132.803 85.520 1.00156.41 ATOM 225 O MET F 474 139.789 132.403 84.912 1.00156.41 ATOM 226 CB MET F 474 142.651 131.135 85.844 1.00156.41 ATOM 227 CG MET F 474 143.400 131.396 87.143 1.00156.41 ATOM 228 SD MET F 474 144.368 129.982 87.711 1.00156.41 ATOM 229 CE MET F 474 143.071 128.874 88.268 1.00156.41 ATOM 230 N GLY F 475 140.747 133.695 86.505 1.00149.58 ATOM 231 CA GLY F 475 139.513 134.110 87.146 1.00149.58 ATOM 232 C GLY F 475 139.213 133.237 88.348 1.00149.58 ATOM 233 O GLY F 475 138.206 133.417 89.033 1.00149.58 ATOM 234 N ARG F 476 140.108 132.290 88.602 1.00147.14 ATOM 235 CA ARG F 476 140.052 131.453 89.791 1.00147.14 ATOM 236 C ARG F 476 141.464 131.302 90.344 1.00147.14 ATOM 237 O ARG F 476 142.438 131.421 89.600 1.00147.14 ATOM 238 CB ARG F 476 139.464 130.082 89.458 1.00 20.00 TER