HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 7W1M TITLE Cryo-EM structure of human cohesin-CTCF-DNA complex COMPND MOL_ID: 8; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 7W1M H 1 727 UNP P49711 CTCF_HUMAN 1 727 SEQRES 1 H 31 ASP PRO ASN PHE VAL PRO ALA ALA PHE VAL CYS SER LYS SEQRES 2 H 31 CYS GLY LYS THR PHE THR ARG ARG ASN THR MET ALA ARG SEQRES 3 H 31 HIS ALA ASP ASN CYS ATOM 1 N ASP H 547 391.678 416.095 338.062 1.00410.75 ATOM 2 CA ASP H 547 390.442 416.668 338.686 1.00410.75 ATOM 3 C ASP H 547 390.669 417.298 340.076 1.00410.75 ATOM 4 O ASP H 547 390.750 416.584 341.100 1.00410.75 ATOM 5 CB ASP H 547 389.320 415.627 338.748 1.00410.75 ATOM 6 N PRO H 548 390.669 418.635 340.289 1.00394.75 ATOM 7 CA PRO H 548 390.867 419.063 341.689 1.00394.75 ATOM 8 C PRO H 548 389.977 418.435 342.763 1.00394.75 ATOM 9 O PRO H 548 390.088 418.819 343.932 1.00394.75 ATOM 10 CB PRO H 548 390.616 420.579 341.622 1.00394.75 ATOM 11 CG PRO H 548 389.891 420.810 340.332 1.00394.75 ATOM 12 CD PRO H 548 390.402 419.773 339.395 1.00394.75 ATOM 13 N ASN H 549 389.104 417.490 342.416 1.00382.63 ATOM 14 CA ASN H 549 388.253 416.847 343.409 1.00382.63 ATOM 15 C ASN H 549 388.790 415.431 343.601 1.00382.63 ATOM 16 O ASN H 549 388.036 414.451 343.595 1.00382.63 ATOM 17 CB ASN H 549 386.787 416.862 342.954 1.00382.63 ATOM 18 CG ASN H 549 385.815 416.419 344.044 1.00382.63 ATOM 19 OD1 ASN H 549 386.216 416.069 345.154 1.00382.63 ATOM 20 ND2 ASN H 549 384.526 416.433 343.722 1.00382.63 ATOM 21 N PHE H 550 390.117 415.321 343.721 1.00372.37 ATOM 22 CA PHE H 550 390.750 414.023 343.947 1.00372.37 ATOM 23 C PHE H 550 390.360 413.417 345.296 1.00372.37 ATOM 24 O PHE H 550 390.090 412.212 345.371 1.00372.37 ATOM 25 CB PHE H 550 392.275 414.133 343.755 1.00372.37 ATOM 26 CG PHE H 550 392.943 415.261 344.512 1.00372.37 ATOM 27 CD1 PHE H 550 392.948 416.560 344.011 1.00372.37 ATOM 28 CD2 PHE H 550 393.642 415.007 345.673 1.00372.37 ATOM 29 CE1 PHE H 550 393.577 417.584 344.695 1.00372.37 ATOM 30 CE2 PHE H 550 394.275 416.026 346.364 1.00372.37 ATOM 31 CZ PHE H 550 394.245 417.315 345.871 1.00372.37 ATOM 32 N VAL H 551 390.276 414.238 346.347 1.00358.15 ATOM 33 CA VAL H 551 389.784 413.873 347.686 1.00358.15 ATOM 34 C VAL H 551 390.349 412.564 348.236 1.00358.15 ATOM 35 O VAL H 551 389.633 411.552 348.239 1.00358.15 ATOM 36 CB VAL H 551 388.248 413.811 347.691 1.00358.15 ATOM 37 N PRO H 552 391.615 412.514 348.659 1.00363.55 ATOM 38 CA PRO H 552 392.163 411.280 349.248 1.00363.55 ATOM 39 C PRO H 552 391.424 410.853 350.508 1.00363.55 ATOM 40 O PRO H 552 391.388 411.585 351.501 1.00363.55 ATOM 41 CB PRO H 552 393.613 411.661 349.570 1.00363.55 ATOM 42 CG PRO H 552 393.917 412.830 348.705 1.00363.55 ATOM 43 CD PRO H 552 392.621 413.584 348.615 1.00363.55 ATOM 44 N ALA H 553 390.779 409.682 350.431 1.00338.47 ATOM 45 CA ALA H 553 390.023 409.081 351.528 1.00338.47 ATOM 46 C ALA H 553 390.876 408.999 352.790 1.00338.47 ATOM 47 O ALA H 553 391.878 408.276 352.797 1.00338.47 ATOM 48 CB ALA H 553 389.515 407.693 351.134 1.00338.47 ATOM 49 N ALA H 554 390.527 409.804 353.806 1.00330.92 ATOM 50 CA ALA H 554 391.235 409.861 355.089 1.00330.92 ATOM 51 C ALA H 554 391.655 408.504 355.651 1.00330.92 ATOM 52 O ALA H 554 392.833 408.298 355.966 1.00330.92 ATOM 53 CB ALA H 554 390.364 410.600 356.108 1.00330.92 ATOM 54 N PHE H 555 390.708 407.558 355.720 1.00336.22 ATOM 55 CA PHE H 555 390.933 406.184 356.196 1.00336.22 ATOM 56 C PHE H 555 391.667 406.153 357.538 1.00336.22 ATOM 57 O PHE H 555 392.710 405.511 357.685 1.00336.22 ATOM 58 CB PHE H 555 391.685 405.362 355.148 1.00336.22 ATOM 59 CG PHE H 555 390.820 404.865 354.026 1.00336.22 ATOM 60 CD1 PHE H 555 389.498 404.516 354.252 1.00336.22 ATOM 61 CD2 PHE H 555 391.335 404.731 352.746 1.00336.22 ATOM 62 CE1 PHE H 555 388.702 404.053 353.220 1.00336.22 ATOM 63 CE2 PHE H 555 390.545 404.267 351.709 1.00336.22 ATOM 64 CZ PHE H 555 389.227 403.928 351.947 1.00336.22 ATOM 65 N VAL H 556 391.128 406.892 358.513 1.00337.46 ATOM 66 CA VAL H 556 391.806 407.049 359.795 1.00337.46 ATOM 67 C VAL H 556 391.924 405.725 360.548 1.00337.46 ATOM 68 O VAL H 556 391.035 404.863 360.503 1.00337.46 ATOM 69 CB VAL H 556 391.092 408.118 360.642 1.00337.46 ATOM 70 CG1 VAL H 556 391.135 409.462 359.933 1.00337.46 ATOM 71 CG2 VAL H 556 389.646 407.726 360.916 1.00337.46 ATOM 72 N CYS H 557 393.068 405.552 361.210 1.00411.16 ATOM 73 CA CYS H 557 393.434 404.357 361.963 1.00411.16 ATOM 74 C CYS H 557 392.789 404.388 363.344 1.00411.16 ATOM 75 O CYS H 557 391.665 404.871 363.511 1.00411.16 ATOM 76 CB CYS H 557 394.950 404.210 362.088 1.00411.16 ATOM 77 SG CYS H 557 395.666 405.120 363.456 1.00411.16 ATOM 78 N SER H 558 393.507 403.865 364.339 1.00417.33 ATOM 79 CA SER H 558 393.040 403.843 365.718 1.00417.33 ATOM 80 C SER H 558 393.534 405.075 366.472 1.00417.33 ATOM 81 O SER H 558 393.355 406.198 365.987 1.00417.33 ATOM 82 CB SER H 558 393.502 402.563 366.419 1.00417.33 ATOM 83 OG SER H 558 392.697 402.280 367.549 1.00417.33 ATOM 84 N LYS H 559 394.122 404.877 367.660 1.00434.10 ATOM 85 CA LYS H 559 394.342 405.979 368.602 1.00434.10 ATOM 86 C LYS H 559 395.253 407.080 368.054 1.00434.10 ATOM 87 O LYS H 559 394.982 408.266 368.276 1.00434.10 ATOM 88 CB LYS H 559 394.913 405.430 369.909 1.00434.10 ATOM 89 N CYS H 560 396.354 406.718 367.380 1.00494.15 ATOM 90 CA CYS H 560 397.265 407.748 366.869 1.00494.15 ATOM 91 C CYS H 560 396.584 408.601 365.799 1.00494.15 ATOM 92 O CYS H 560 396.758 409.824 365.763 1.00494.15 ATOM 93 CB CYS H 560 398.577 407.135 366.366 1.00494.15 ATOM 94 SG CYS H 560 398.640 406.518 364.685 1.00494.15 ATOM 95 N GLY H 561 395.805 407.967 364.922 1.00422.45 ATOM 96 CA GLY H 561 394.981 408.655 363.946 1.00422.45 ATOM 97 C GLY H 561 395.652 409.141 362.680 1.00422.45 ATOM 98 O GLY H 561 395.017 409.885 361.922 1.00422.45 ATOM 99 N LYS H 562 396.905 408.771 362.423 1.00398.26 ATOM 100 CA LYS H 562 397.596 409.289 361.248 1.00398.26 ATOM 101 C LYS H 562 397.024 408.635 359.992 1.00398.26 ATOM 102 O LYS H 562 396.662 407.455 360.000 1.00398.26 ATOM 103 CB LYS H 562 399.101 409.042 361.363 1.00398.26 ATOM 104 CG LYS H 562 399.957 410.027 360.576 1.00398.26 ATOM 105 CD LYS H 562 400.397 409.475 359.238 1.00398.26 ATOM 106 CE LYS H 562 401.577 410.256 358.682 1.00398.26 ATOM 107 NZ LYS H 562 401.972 409.778 357.329 1.00398.26 ATOM 108 N THR H 563 396.941 409.402 358.905 1.00385.42 ATOM 109 CA THR H 563 396.364 408.906 357.658 1.00385.42 ATOM 110 C THR H 563 397.410 408.296 356.728 1.00385.42 ATOM 111 O THR H 563 398.556 408.750 356.664 1.00385.42 ATOM 112 CB THR H 563 395.606 410.028 356.937 1.00385.42 ATOM 113 OG1 THR H 563 395.045 409.526 355.717 1.00385.42 ATOM 114 CG2 THR H 563 396.511 411.223 356.642 1.00385.42 ATOM 115 N PHE H 564 397.004 407.237 356.023 1.00386.12 ATOM 116 CA PHE H 564 397.831 406.556 355.034 1.00386.12 ATOM 117 C PHE H 564 396.959 406.205 353.832 1.00386.12 ATOM 118 O PHE H 564 395.778 405.882 353.983 1.00386.12 ATOM 119 CB PHE H 564 398.530 405.294 355.575 1.00386.12 ATOM 120 CG PHE H 564 399.460 405.544 356.737 1.00386.12 ATOM 121 CD1 PHE H 564 398.972 405.663 358.032 1.00386.12 ATOM 122 CD2 PHE H 564 400.821 405.699 356.526 1.00386.12 ATOM 123 CE1 PHE H 564 399.829 405.894 359.093 1.00386.12 ATOM 124 CE2 PHE H 564 401.683 405.931 357.583 1.00386.12 ATOM 125 CZ PHE H 564 401.186 406.029 358.867 1.00386.12 ATOM 126 N THR H 565 397.534 406.328 352.639 1.00358.80 ATOM 127 CA THR H 565 396.866 406.088 351.361 1.00358.80 ATOM 128 C THR H 565 396.653 404.616 350.995 1.00358.80 ATOM 129 O THR H 565 396.094 404.356 349.924 1.00358.80 ATOM 130 CB THR H 565 397.651 406.766 350.234 1.00358.80 ATOM 131 OG1 THR H 565 398.978 406.228 350.181 1.00358.80 ATOM 132 CG2 THR H 565 397.728 408.268 350.467 1.00358.80 ATOM 133 N ARG H 566 397.061 403.643 351.816 1.00402.28 ATOM 134 CA ARG H 566 396.940 402.233 351.433 1.00402.28 ATOM 135 C ARG H 566 396.492 401.364 352.602 1.00402.28 ATOM 136 O ARG H 566 397.005 401.506 353.715 1.00402.28 ATOM 137 CB ARG H 566 398.265 401.681 350.878 1.00402.28 ATOM 138 CG ARG H 566 398.809 402.376 349.635 1.00402.28 ATOM 139 CD ARG H 566 399.472 401.385 348.691 1.00402.28 ATOM 140 NE ARG H 566 399.855 402.009 347.431 1.00402.28 ATOM 141 CZ ARG H 566 400.537 401.401 346.470 1.00402.28 ATOM 142 NH1 ARG H 566 400.922 400.141 346.587 1.00402.28 ATOM 143 NH2 ARG H 566 400.836 402.073 345.361 1.00402.28 ATOM 144 N ARG H 567 395.524 400.472 352.321 1.00405.12 ATOM 145 CA ARG H 567 394.882 399.626 353.335 1.00405.12 ATOM 146 C ARG H 567 395.892 398.800 354.124 1.00405.12 ATOM 147 O ARG H 567 395.768 398.665 355.352 1.00405.12 ATOM 148 CB ARG H 567 393.845 398.717 352.669 1.00405.12 ATOM 149 CG ARG H 567 393.188 397.714 353.608 1.00405.12 ATOM 150 CD ARG H 567 392.539 396.559 352.831 1.00405.12 ATOM 151 NE ARG H 567 391.484 396.932 351.886 1.00405.12 ATOM 152 CZ ARG H 567 390.354 397.578 352.163 1.00405.12 ATOM 153 NH1 ARG H 567 390.040 397.956 353.394 1.00405.12 ATOM 154 NH2 ARG H 567 389.506 397.847 351.174 1.00405.12 ATOM 155 N ASN H 568 396.867 398.203 353.427 1.00413.40 ATOM 156 CA ASN H 568 397.848 397.341 354.081 1.00413.40 ATOM 157 C ASN H 568 398.623 398.121 355.136 1.00413.40 ATOM 158 O ASN H 568 398.949 397.586 356.205 1.00413.40 ATOM 159 CB ASN H 568 398.783 396.710 353.043 1.00413.40 ATOM 160 CG ASN H 568 399.462 397.735 352.144 1.00413.40 ATOM 161 OD1 ASN H 568 399.319 398.944 352.326 1.00413.40 ATOM 162 ND2 ASN H 568 400.207 397.246 351.160 1.00413.40 ATOM 163 N THR H 569 398.930 399.390 354.836 1.00418.69 ATOM 164 CA THR H 569 399.630 400.243 355.788 1.00418.69 ATOM 165 C THR H 569 398.796 400.442 357.049 1.00418.69 ATOM 166 O THR H 569 399.335 400.388 358.162 1.00418.69 ATOM 167 CB THR H 569 399.985 401.582 355.149 1.00418.69 ATOM 168 OG1 THR H 569 400.468 401.361 353.818 1.00418.69 ATOM 169 CG2 THR H 569 401.084 402.246 355.949 1.00418.69 ATOM 170 N MET H 570 397.483 400.699 356.902 1.00416.96 ATOM 171 CA MET H 570 396.666 400.883 358.100 1.00416.96 ATOM 172 C MET H 570 396.604 399.600 358.907 1.00416.96 ATOM 173 O MET H 570 396.639 399.650 360.136 1.00416.96 ATOM 174 CB MET H 570 395.236 401.369 357.826 1.00416.96 ATOM 175 CG MET H 570 395.078 402.840 357.505 1.00416.96 ATOM 176 SD MET H 570 395.589 403.409 355.902 1.00416.96 ATOM 177 CE MET H 570 394.242 402.768 354.926 1.00416.96 ATOM 178 N ALA H 571 396.453 398.447 358.243 1.00427.02 ATOM 179 CA ALA H 571 396.353 397.199 359.000 1.00427.02 ATOM 180 C ALA H 571 397.646 396.908 359.763 1.00427.02 ATOM 181 O ALA H 571 397.610 396.568 360.958 1.00427.02 ATOM 182 CB ALA H 571 396.007 396.043 358.063 1.00427.02 ATOM 183 N ARG H 572 398.801 397.087 359.101 1.00437.45 ATOM 184 CA ARG H 572 400.081 396.822 359.757 1.00437.45 ATOM 185 C ARG H 572 400.317 397.799 360.907 1.00437.45 ATOM 186 O ARG H 572 400.793 397.399 361.976 1.00437.45 ATOM 187 CB ARG H 572 401.237 396.816 358.743 1.00437.45 ATOM 188 CG ARG H 572 401.609 398.126 358.070 1.00437.45 ATOM 189 CD ARG H 572 402.858 397.987 357.210 1.00437.45 ATOM 190 NE ARG H 572 402.660 397.084 356.082 1.00437.45 ATOM 191 CZ ARG H 572 403.199 395.876 355.983 1.00437.45 ATOM 192 NH1 ARG H 572 403.977 395.387 356.935 1.00437.45 ATOM 193 NH2 ARG H 572 402.951 395.140 354.904 1.00437.45 ATOM 194 N HIS H 573 400.059 399.083 360.676 1.00478.70 ATOM 195 CA HIS H 573 400.406 400.061 361.738 1.00478.70 ATOM 196 C HIS H 573 399.381 399.972 362.876 1.00478.70 ATOM 197 O HIS H 573 399.756 400.281 364.018 1.00478.70 ATOM 198 CB HIS H 573 400.684 401.440 361.121 1.00478.70 ATOM 199 CG HIS H 573 399.793 402.519 361.623 1.00478.70 ATOM 200 ND1 HIS H 573 398.799 403.069 360.846 1.00478.70 ATOM 201 CD2 HIS H 573 399.754 403.156 362.810 1.00478.70 ATOM 202 CE1 HIS H 573 398.181 403.999 361.538 1.00478.70 ATOM 203 NE2 HIS H 573 398.728 404.051 362.760 1.00478.70 ATOM 204 N ALA H 574 398.160 399.510 362.582 1.00458.65 ATOM 205 CA ALA H 574 397.122 399.361 363.631 1.00458.65 ATOM 206 C ALA H 574 397.424 398.144 364.516 1.00458.65 ATOM 207 O ALA H 574 397.157 398.232 365.731 1.00458.65 ATOM 208 CB ALA H 574 395.744 399.268 363.024 1.00458.65 ATOM 209 N ASP H 575 397.933 397.053 363.929 1.00455.64 ATOM 210 CA ASP H 575 398.230 395.857 364.717 1.00455.64 ATOM 211 C ASP H 575 399.029 396.220 365.967 1.00455.64 ATOM 212 O ASP H 575 398.848 395.614 367.030 1.00455.64 ATOM 213 CB ASP H 575 398.990 394.840 363.866 1.00455.64 ATOM 214 CG ASP H 575 398.066 393.922 363.091 1.00455.64 ATOM 215 OD1 ASP H 575 396.922 393.706 363.544 1.00455.64 ATOM 216 OD2 ASP H 575 398.484 393.415 362.029 1.00455.64 ATOM 217 N ASN H 576 399.920 397.210 365.850 1.00465.35 ATOM 218 CA ASN H 576 400.675 397.761 366.974 1.00465.35 ATOM 219 C ASN H 576 400.490 399.289 366.971 1.00465.35 ATOM 220 O ASN H 576 401.392 400.059 366.637 1.00465.35 ATOM 221 CB ASN H 576 402.151 397.328 366.916 1.00465.35 ATOM 222 CG ASN H 576 402.764 397.455 365.520 1.00465.35 ATOM 223 OD1 ASN H 576 402.445 398.358 364.748 1.00465.35 ATOM 224 ND2 ASN H 576 403.662 396.531 365.198 1.00465.35 ATOM 225 N CYS H 577 399.311 399.728 367.405 1.00493.06 ATOM 226 CA CYS H 577 399.026 401.153 367.586 1.00493.06 ATOM 227 C CYS H 577 398.264 401.409 368.881 1.00493.06 ATOM 228 O CYS H 577 397.160 400.900 369.074 1.00493.06 ATOM 229 CB CYS H 577 398.228 401.686 366.386 1.00493.06 ATOM 230 SG CYS H 577 397.492 403.343 366.550 1.00493.06 ATOM 231 ZN ZN H 397.614 404.467 364.512 1.00549.41 TER