HEADER RIBOSOME 31-DEC-69 8CDR TITLE Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome TITLE 2 with ligands and eEF2 in the presence of sordarin COMPND MOL_ID: 58; COMPND 2 MOLECULE: 60S ribosomal protein L41-A; COMPND 3 CHAIN: Z; EXPDTA ELECTRON MICROSCOPY DBREF 8CDR Z 1 25 UNP P0CX86 RL41A_YEAST 1 25 SEQRES 1 Z 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 Z 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET Z 1 274.056 283.382 225.523 1.00 47.59 ATOM 2 CA MET Z 1 275.138 282.829 226.327 1.00 47.59 ATOM 3 C MET Z 1 276.011 281.900 225.491 1.00 47.59 ATOM 4 O MET Z 1 275.538 281.287 224.534 1.00 47.59 ATOM 5 CB MET Z 1 274.581 282.073 227.536 1.00 47.59 ATOM 6 CG MET Z 1 275.629 281.696 228.573 1.00 47.59 ATOM 7 SD MET Z 1 274.989 280.769 229.983 1.00 47.59 ATOM 8 CE MET Z 1 273.242 280.720 229.607 1.00 47.59 ATOM 9 N ARG Z 2 277.288 281.814 225.854 1.00 44.00 ATOM 10 CA ARG Z 2 278.184 280.841 225.247 1.00 44.00 ATOM 11 C ARG Z 2 277.617 279.435 225.396 1.00 44.00 ATOM 12 O ARG Z 2 277.082 279.076 226.447 1.00 44.00 ATOM 13 CB ARG Z 2 279.561 280.921 225.898 1.00 44.00 ATOM 14 CG ARG Z 2 280.704 280.580 224.975 1.00 44.00 ATOM 15 CD ARG Z 2 282.026 280.696 225.699 1.00 44.00 ATOM 16 NE ARG Z 2 282.951 279.653 225.279 1.00 44.00 ATOM 17 CZ ARG Z 2 284.204 279.549 225.696 1.00 44.00 ATOM 18 NH1 ARG Z 2 284.721 280.410 226.556 1.00 44.00 ATOM 19 NH2 ARG Z 2 284.956 278.555 225.237 1.00 44.00 ATOM 20 N ALA Z 3 277.711 278.646 224.323 1.00 44.36 ATOM 21 CA ALA Z 3 277.162 277.294 224.353 1.00 44.36 ATOM 22 C ALA Z 3 277.846 276.439 225.414 1.00 44.36 ATOM 23 O ALA Z 3 277.200 275.606 226.059 1.00 44.36 ATOM 24 CB ALA Z 3 277.285 276.645 222.975 1.00 44.36 ATOM 25 N LYS Z 4 279.150 276.639 225.616 1.00 43.52 ATOM 26 CA LYS Z 4 279.863 275.888 226.646 1.00 43.52 ATOM 27 C LYS Z 4 279.324 276.204 228.035 1.00 43.52 ATOM 28 O LYS Z 4 279.126 275.301 228.857 1.00 43.52 ATOM 29 CB LYS Z 4 281.357 276.191 226.568 1.00 43.52 ATOM 30 CG LYS Z 4 282.209 275.415 227.551 1.00 43.52 ATOM 31 CD LYS Z 4 283.615 275.982 227.609 1.00 43.52 ATOM 32 CE LYS Z 4 284.553 275.232 226.683 1.00 43.52 ATOM 33 NZ LYS Z 4 285.960 275.297 227.159 1.00 43.52 ATOM 34 N TRP Z 5 279.067 277.481 228.316 1.00 44.95 ATOM 35 CA TRP Z 5 278.565 277.846 229.633 1.00 44.95 ATOM 36 C TRP Z 5 277.101 277.471 229.802 1.00 44.95 ATOM 37 O TRP Z 5 276.672 277.160 230.917 1.00 44.95 ATOM 38 CB TRP Z 5 278.775 279.340 229.875 1.00 44.95 ATOM 39 CG TRP Z 5 280.206 279.811 229.704 1.00 44.95 ATOM 40 CD1 TRP Z 5 280.606 281.024 229.227 1.00 44.95 ATOM 41 CD2 TRP Z 5 281.413 279.095 230.027 1.00 44.95 ATOM 42 NE1 TRP Z 5 281.975 281.107 229.219 1.00 44.95 ATOM 43 CE2 TRP Z 5 282.494 279.937 229.705 1.00 44.95 ATOM 44 CE3 TRP Z 5 281.683 277.825 230.552 1.00 44.95 ATOM 45 CZ2 TRP Z 5 283.819 279.552 229.888 1.00 44.95 ATOM 46 CZ3 TRP Z 5 282.999 277.447 230.730 1.00 44.95 ATOM 47 CH2 TRP Z 5 284.050 278.307 230.400 1.00 44.95 ATOM 48 N ARG Z 6 276.330 277.471 228.713 1.00 46.27 ATOM 49 CA ARG Z 6 274.986 276.907 228.759 1.00 46.27 ATOM 50 C ARG Z 6 275.035 275.427 229.111 1.00 46.27 ATOM 51 O ARG Z 6 274.238 274.946 229.924 1.00 46.27 ATOM 52 CB ARG Z 6 274.281 277.121 227.420 1.00 46.27 ATOM 53 CG ARG Z 6 272.877 276.545 227.353 1.00 46.27 ATOM 54 CD ARG Z 6 271.935 277.245 228.314 1.00 46.27 ATOM 55 NE ARG Z 6 271.250 278.365 227.680 1.00 46.27 ATOM 56 CZ ARG Z 6 270.379 279.155 228.294 1.00 46.27 ATOM 57 NH1 ARG Z 6 270.061 278.977 229.565 1.00 46.27 ATOM 58 NH2 ARG Z 6 269.812 280.147 227.614 1.00 46.27 ATOM 59 N LYS Z 7 275.974 274.692 228.512 1.00 45.08 ATOM 60 CA LYS Z 7 276.137 273.279 228.832 1.00 45.08 ATOM 61 C LYS Z 7 276.536 273.085 230.289 1.00 45.08 ATOM 62 O LYS Z 7 276.052 272.164 230.954 1.00 45.08 ATOM 63 CB LYS Z 7 277.171 272.649 227.901 1.00 45.08 ATOM 64 CG LYS Z 7 277.337 271.154 228.082 1.00 45.08 ATOM 65 CD LYS Z 7 277.761 270.491 226.785 1.00 45.08 ATOM 66 CE LYS Z 7 279.176 269.956 226.878 1.00 45.08 ATOM 67 NZ LYS Z 7 279.390 268.791 225.978 1.00 45.08 ATOM 68 N LYS Z 8 277.425 273.938 230.801 1.00 45.50 ATOM 69 CA LYS Z 8 277.837 273.822 232.199 1.00 45.50 ATOM 70 C LYS Z 8 276.681 274.125 233.149 1.00 45.50 ATOM 71 O LYS Z 8 276.498 273.430 234.158 1.00 45.50 ATOM 72 CB LYS Z 8 279.016 274.752 232.477 1.00 45.50 ATOM 73 CG LYS Z 8 279.704 274.492 233.803 1.00 45.50 ATOM 74 CD LYS Z 8 280.765 275.538 234.091 1.00 45.50 ATOM 75 CE LYS Z 8 281.627 275.129 235.272 1.00 45.50 ATOM 76 NZ LYS Z 8 282.647 274.119 234.889 1.00 45.50 ATOM 77 N ARG Z 9 275.884 275.149 232.837 1.00 46.40 ATOM 78 CA ARG Z 9 274.720 275.459 233.659 1.00 46.40 ATOM 79 C ARG Z 9 273.707 274.324 233.616 1.00 46.40 ATOM 80 O ARG Z 9 273.104 273.974 234.638 1.00 46.40 ATOM 81 CB ARG Z 9 274.083 276.766 233.188 1.00 46.40 ATOM 82 CG ARG Z 9 272.867 277.192 233.988 1.00 46.40 ATOM 83 CD ARG Z 9 271.984 278.132 233.185 1.00 46.40 ATOM 84 NE ARG Z 9 272.489 279.499 233.194 1.00 46.40 ATOM 85 CZ ARG Z 9 271.805 280.553 232.772 1.00 46.40 ATOM 86 NH1 ARG Z 9 270.578 280.433 232.293 1.00 46.40 ATOM 87 NH2 ARG Z 9 272.366 281.756 232.828 1.00 46.40 ATOM 88 N THR Z 10 273.525 273.721 232.441 1.00 45.79 ATOM 89 CA THR Z 10 272.608 272.597 232.316 1.00 45.79 ATOM 90 C THR Z 10 273.110 271.387 233.094 1.00 45.79 ATOM 91 O THR Z 10 272.316 270.660 233.694 1.00 45.79 ATOM 92 CB THR Z 10 272.410 272.250 230.842 1.00 45.79 ATOM 93 OG1 THR Z 10 271.913 273.399 230.145 1.00 45.79 ATOM 94 CG2 THR Z 10 271.418 271.124 230.699 1.00 45.79 ATOM 95 N ARG Z 11 274.422 271.146 233.083 1.00 44.84 ATOM 96 CA ARG Z 11 274.977 270.045 233.864 1.00 44.84 ATOM 97 C ARG Z 11 274.805 270.279 235.360 1.00 44.84 ATOM 98 O ARG Z 11 274.503 269.342 236.108 1.00 44.84 ATOM 99 CB ARG Z 11 276.449 269.843 233.512 1.00 44.84 ATOM 100 CG ARG Z 11 276.654 268.972 232.290 1.00 44.84 ATOM 101 CD ARG Z 11 278.098 268.957 231.841 1.00 44.84 ATOM 102 NE ARG Z 11 278.250 268.238 230.583 1.00 44.84 ATOM 103 CZ ARG Z 11 279.276 267.453 230.289 1.00 44.84 ATOM 104 NH1 ARG Z 11 280.269 267.265 231.143 1.00 44.84 ATOM 105 NH2 ARG Z 11 279.307 266.841 229.109 1.00 44.84 ATOM 106 N ARG Z 12 274.990 271.520 235.816 1.00 46.94 ATOM 107 CA ARG Z 12 274.732 271.824 237.222 1.00 46.94 ATOM 108 C ARG Z 12 273.263 271.609 237.568 1.00 46.94 ATOM 109 O ARG Z 12 272.935 271.071 238.634 1.00 46.94 ATOM 110 CB ARG Z 12 275.154 273.258 237.538 1.00 46.94 ATOM 111 CG ARG Z 12 276.656 273.463 237.596 1.00 46.94 ATOM 112 CD ARG Z 12 277.010 274.701 238.404 1.00 46.94 ATOM 113 NE ARG Z 12 276.942 275.916 237.602 1.00 46.94 ATOM 114 CZ ARG Z 12 277.996 276.636 237.243 1.00 46.94 ATOM 115 NH1 ARG Z 12 279.222 276.293 237.602 1.00 46.94 ATOM 116 NH2 ARG Z 12 277.815 277.728 236.506 1.00 46.94 ATOM 117 N LEU Z 13 272.365 272.019 236.671 1.00 46.66 ATOM 118 CA LEU Z 13 270.939 271.799 236.882 1.00 46.66 ATOM 119 C LEU Z 13 270.610 270.312 236.932 1.00 46.66 ATOM 120 O LEU Z 13 269.795 269.875 237.751 1.00 46.66 ATOM 121 CB LEU Z 13 270.149 272.499 235.777 1.00 46.66 ATOM 122 CG LEU Z 13 268.628 272.560 235.866 1.00 46.66 ATOM 123 CD1 LEU Z 13 268.200 273.597 236.882 1.00 46.66 ATOM 124 CD2 LEU Z 13 268.066 272.896 234.499 1.00 46.66 ATOM 125 N LYS Z 14 271.231 269.521 236.054 1.00 45.83 ATOM 126 CA LYS Z 14 271.029 268.076 236.063 1.00 45.83 ATOM 127 C LYS Z 14 271.527 267.456 237.361 1.00 45.83 ATOM 128 O LYS Z 14 270.887 266.555 237.911 1.00 45.83 ATOM 129 CB LYS Z 14 271.736 267.440 234.866 1.00 45.83 ATOM 130 CG LYS Z 14 270.899 267.386 233.602 1.00 45.83 ATOM 131 CD LYS Z 14 271.505 266.434 232.585 1.00 45.83 ATOM 132 CE LYS Z 14 271.796 265.078 233.207 1.00 45.83 ATOM 133 NZ LYS Z 14 271.799 263.984 232.199 1.00 45.83 ATOM 134 N ARG Z 15 272.677 267.916 237.858 1.00 46.13 ATOM 135 CA ARG Z 15 273.187 267.412 239.130 1.00 46.13 ATOM 136 C ARG Z 15 272.237 267.747 240.274 1.00 46.13 ATOM 137 O ARG Z 15 271.977 266.907 241.145 1.00 46.13 ATOM 138 CB ARG Z 15 274.578 267.985 239.401 1.00 46.13 ATOM 139 CG ARG Z 15 275.704 266.975 239.261 1.00 46.13 ATOM 140 CD ARG Z 15 276.894 267.351 240.125 1.00 46.13 ATOM 141 NE ARG Z 15 277.136 268.788 240.121 1.00 46.13 ATOM 142 CZ ARG Z 15 277.953 269.409 239.282 1.00 46.13 ATOM 143 NH1 ARG Z 15 278.632 268.746 238.360 1.00 46.13 ATOM 144 NH2 ARG Z 15 278.094 270.729 239.371 1.00 46.13 ATOM 145 N LYS Z 16 271.708 268.973 240.286 1.00 46.10 ATOM 146 CA LYS Z 16 270.760 269.356 241.328 1.00 46.10 ATOM 147 C LYS Z 16 269.482 268.529 241.242 1.00 46.10 ATOM 148 O LYS Z 16 268.934 268.108 242.269 1.00 46.10 ATOM 149 CB LYS Z 16 270.447 270.848 241.225 1.00 46.10 ATOM 150 CG LYS Z 16 270.943 271.665 242.405 1.00 46.10 ATOM 151 CD LYS Z 16 270.905 273.154 242.101 1.00 46.10 ATOM 152 CE LYS Z 16 271.964 273.904 242.892 1.00 46.10 ATOM 153 NZ LYS Z 16 271.813 273.690 244.358 1.00 46.10 ATOM 154 N ARG Z 17 268.992 268.287 240.023 1.00 46.31 ATOM 155 CA ARG Z 17 267.817 267.440 239.849 1.00 46.31 ATOM 156 C ARG Z 17 268.085 266.020 240.325 1.00 46.31 ATOM 157 O ARG Z 17 267.227 265.399 240.961 1.00 46.31 ATOM 158 CB ARG Z 17 267.381 267.429 238.385 1.00 46.31 ATOM 159 CG ARG Z 17 266.366 268.488 238.013 1.00 46.31 ATOM 160 CD ARG Z 17 266.347 268.703 236.512 1.00 46.31 ATOM 161 NE ARG Z 17 265.709 269.958 236.139 1.00 46.31 ATOM 162 CZ ARG Z 17 265.687 270.447 234.907 1.00 46.31 ATOM 163 NH1 ARG Z 17 266.286 269.823 233.906 1.00 46.31 ATOM 164 NH2 ARG Z 17 265.049 271.589 234.674 1.00 46.31 ATOM 165 N ARG Z 18 269.270 265.487 240.019 1.00 45.96 ATOM 166 CA ARG Z 18 269.615 264.143 240.465 1.00 45.96 ATOM 167 C ARG Z 18 269.658 264.068 241.984 1.00 45.96 ATOM 168 O ARG Z 18 269.174 263.099 242.577 1.00 45.96 ATOM 169 CB ARG Z 18 270.958 263.720 239.871 1.00 45.96 ATOM 170 CG ARG Z 18 270.866 263.107 238.487 1.00 45.96 ATOM 171 CD ARG Z 18 272.004 262.129 238.248 1.00 45.96 ATOM 172 NE ARG Z 18 273.306 262.725 238.522 1.00 45.96 ATOM 173 CZ ARG Z 18 273.999 263.446 237.651 1.00 45.96 ATOM 174 NH1 ARG Z 18 273.538 263.695 236.437 1.00 45.96 ATOM 175 NH2 ARG Z 18 275.185 263.928 238.009 1.00 45.96 ATOM 176 N LYS Z 19 270.219 265.092 242.630 1.00 46.25 ATOM 177 CA LYS Z 19 270.270 265.107 244.089 1.00 46.25 ATOM 178 C LYS Z 19 268.869 265.174 244.689 1.00 46.25 ATOM 179 O LYS Z 19 268.542 264.427 245.622 1.00 46.25 ATOM 180 CB LYS Z 19 271.120 266.283 244.569 1.00 46.25 ATOM 181 CG LYS Z 19 271.806 266.044 245.904 1.00 46.25 ATOM 182 CD LYS Z 19 271.800 267.300 246.758 1.00 46.25 ATOM 183 CE LYS Z 19 272.678 267.136 247.986 1.00 46.25 ATOM 184 NZ LYS Z 19 272.697 265.727 248.466 1.00 46.25 ATOM 185 N VAL Z 20 268.023 266.065 244.163 1.00 46.66 ATOM 186 CA VAL Z 20 266.688 266.229 244.730 1.00 46.66 ATOM 187 C VAL Z 20 265.830 264.996 244.470 1.00 46.66 ATOM 188 O VAL Z 20 264.946 264.669 245.270 1.00 46.66 ATOM 189 CB VAL Z 20 266.026 267.518 244.198 1.00 46.66 ATOM 190 CG1 VAL Z 20 265.470 267.319 242.797 1.00 46.66 ATOM 191 CG2 VAL Z 20 264.935 267.984 245.148 1.00 46.66 ATOM 192 N ARG Z 21 266.065 264.293 243.359 1.00 46.54 ATOM 193 CA ARG Z 21 265.326 263.064 243.096 1.00 46.54 ATOM 194 C ARG Z 21 265.828 261.921 243.968 1.00 46.54 ATOM 195 O ARG Z 21 265.033 261.106 244.448 1.00 46.54 ATOM 196 CB ARG Z 21 265.431 262.701 241.616 1.00 46.54 ATOM 197 CG ARG Z 21 264.464 261.622 241.171 1.00 46.54 ATOM 198 CD ARG Z 21 263.782 262.009 239.871 1.00 46.54 ATOM 199 NE ARG Z 21 262.850 260.984 239.418 1.00 46.54 ATOM 200 CZ ARG Z 21 263.079 260.160 238.406 1.00 46.54 ATOM 201 NH1 ARG Z 21 264.206 260.212 237.715 1.00 46.54 ATOM 202 NH2 ARG Z 21 262.154 259.263 238.078 1.00 46.54 ATOM 203 N ALA Z 22 267.145 261.839 244.174 1.00 47.06 ATOM 204 CA ALA Z 22 267.703 260.806 245.040 1.00 47.06 ATOM 205 C ALA Z 22 267.232 260.975 246.476 1.00 47.06 ATOM 206 O ALA Z 22 267.001 259.985 247.181 1.00 47.06 ATOM 207 CB ALA Z 22 269.229 260.829 244.968 1.00 47.06 ATOM 208 N ARG Z 23 267.096 262.222 246.937 1.00 46.36 ATOM 209 CA ARG Z 23 266.651 262.432 248.311 1.00 46.36 ATOM 210 C ARG Z 23 265.228 261.924 248.519 1.00 46.36 ATOM 211 O ARG Z 23 264.906 261.411 249.597 1.00 46.36 ATOM 212 CB ARG Z 23 266.782 263.909 248.696 1.00 46.36 ATOM 213 CG ARG Z 23 265.557 264.770 248.455 1.00 46.36 ATOM 214 CD ARG Z 23 265.668 266.091 249.197 1.00 46.36 ATOM 215 NE ARG Z 23 265.151 265.991 250.557 1.00 46.36 ATOM 216 CZ ARG Z 23 265.709 266.560 251.616 1.00 46.36 ATOM 217 NH1 ARG Z 23 266.813 267.281 251.513 1.00 46.36 ATOM 218 NH2 ARG Z 23 265.145 266.401 252.810 1.00 46.36 ATOM 219 N SER Z 24 264.370 262.050 247.511 1.00 48.78 ATOM 220 CA SER Z 24 263.080 261.383 247.527 1.00 48.78 ATOM 221 C SER Z 24 263.244 259.918 247.133 1.00 48.78 ATOM 222 O SER Z 24 264.248 259.517 246.540 1.00 48.78 ATOM 223 CB SER Z 24 262.099 262.075 246.582 1.00 48.78 ATOM 224 OG SER Z 24 261.974 261.356 245.368 1.00 48.78 ATOM 225 N LYS Z 25 262.243 259.115 247.474 1.00 50.34 ATOM 226 CA LYS Z 25 262.260 257.704 247.106 1.00 50.34 ATOM 227 C LYS Z 25 260.847 257.134 247.043 1.00 50.34 ATOM 228 O LYS Z 25 260.465 256.506 246.055 1.00 50.34 ATOM 229 CB LYS Z 25 263.110 256.900 248.095 1.00 50.34 ATOM 230 CG LYS Z 25 264.491 256.519 247.573 1.00 50.34 ATOM 231 CD LYS Z 25 264.490 256.301 246.067 1.00 50.34 ATOM 232 CE LYS Z 25 265.677 255.461 245.628 1.00 50.34 ATOM 233 NZ LYS Z 25 265.852 255.471 244.150 1.00 50.34 TER