HEADER RIBOSOME 31-DEC-69 8CF5 TITLE Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome TITLE 2 with ligands and eEF2 in the presence of sordarin COMPND MOL_ID: 58; COMPND 2 MOLECULE: 60S ribosomal protein L41; COMPND 3 CHAIN: Z; EXPDTA ELECTRON MICROSCOPY DBREF 8CF5 Z 1 25 UNP A0A8H8UM A0A8H8UMB4_ 1 25 SEQRES 1 Z 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 Z 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET Z 1 236.260 248.930 297.046 1.00 34.80 ATOM 2 CA MET Z 1 237.248 249.940 297.385 1.00 34.80 ATOM 3 C MET Z 1 236.880 250.690 298.656 1.00 34.80 ATOM 4 O MET Z 1 235.709 250.962 298.907 1.00 34.80 ATOM 5 CB MET Z 1 237.410 250.936 296.241 1.00 34.80 ATOM 6 CG MET Z 1 238.509 251.953 296.477 1.00 34.80 ATOM 7 SD MET Z 1 238.706 253.121 295.133 1.00 34.80 ATOM 8 CE MET Z 1 239.434 252.068 293.908 1.00 34.80 ATOM 9 N ARG Z 2 237.891 251.012 299.457 1.00 31.22 ATOM 10 CA ARG Z 2 237.699 251.913 300.583 1.00 31.22 ATOM 11 C ARG Z 2 237.153 253.250 300.100 1.00 31.22 ATOM 12 O ARG Z 2 237.601 253.790 299.087 1.00 31.22 ATOM 13 CB ARG Z 2 239.018 252.116 301.319 1.00 31.22 ATOM 14 CG ARG Z 2 238.884 252.900 302.590 1.00 31.22 ATOM 15 CD ARG Z 2 240.235 253.210 303.169 1.00 31.22 ATOM 16 NE ARG Z 2 240.139 254.227 304.203 1.00 31.22 ATOM 17 CZ ARG Z 2 241.079 254.474 305.099 1.00 31.22 ATOM 18 NH1 ARG Z 2 242.215 253.801 305.111 1.00 31.22 ATOM 19 NH2 ARG Z 2 240.873 255.420 306.007 1.00 31.22 ATOM 20 N ALA Z 3 236.173 253.785 300.833 1.00 31.26 ATOM 21 CA ALA Z 3 235.477 254.984 300.376 1.00 31.26 ATOM 22 C ALA Z 3 236.397 256.195 300.323 1.00 31.26 ATOM 23 O ALA Z 3 236.207 257.078 299.482 1.00 31.26 ATOM 24 CB ALA Z 3 234.273 255.267 301.271 1.00 31.26 ATOM 25 N LYS Z 4 237.397 256.256 301.199 1.00 30.59 ATOM 26 CA LYS Z 4 238.345 257.362 301.150 1.00 30.59 ATOM 27 C LYS Z 4 239.112 257.366 299.833 1.00 30.59 ATOM 28 O LYS Z 4 239.253 258.411 299.184 1.00 30.59 ATOM 29 CB LYS Z 4 239.304 257.265 302.334 1.00 30.59 ATOM 30 CG LYS Z 4 240.255 258.420 302.475 1.00 30.59 ATOM 31 CD LYS Z 4 241.262 258.149 303.569 1.00 30.59 ATOM 32 CE LYS Z 4 240.857 258.801 304.868 1.00 30.59 ATOM 33 NZ LYS Z 4 242.051 259.206 305.644 1.00 30.59 ATOM 34 N TRP Z 5 239.585 256.198 299.403 1.00 31.94 ATOM 35 CA TRP Z 5 240.309 256.133 298.143 1.00 31.94 ATOM 36 C TRP Z 5 239.366 256.250 296.958 1.00 31.94 ATOM 37 O TRP Z 5 239.770 256.718 295.892 1.00 31.94 ATOM 38 CB TRP Z 5 241.127 254.847 298.067 1.00 31.94 ATOM 39 CG TRP Z 5 241.877 254.520 299.328 1.00 31.94 ATOM 40 CD1 TRP Z 5 241.989 253.297 299.906 1.00 31.94 ATOM 41 CD2 TRP Z 5 242.622 255.422 300.158 1.00 31.94 ATOM 42 NE1 TRP Z 5 242.749 253.374 301.041 1.00 31.94 ATOM 43 CE2 TRP Z 5 243.149 254.670 301.218 1.00 31.94 ATOM 44 CE3 TRP Z 5 242.893 256.792 300.107 1.00 31.94 ATOM 45 CZ2 TRP Z 5 243.925 255.237 302.217 1.00 31.94 ATOM 46 CZ3 TRP Z 5 243.660 257.350 301.098 1.00 31.94 ATOM 47 CH2 TRP Z 5 244.167 256.576 302.140 1.00 31.94 ATOM 48 N ARG Z 6 238.107 255.853 297.126 1.00 33.82 ATOM 49 CA ARG Z 6 237.113 256.138 296.100 1.00 33.82 ATOM 50 C ARG Z 6 236.968 257.637 295.897 1.00 33.82 ATOM 51 O ARG Z 6 236.950 258.121 294.759 1.00 33.82 ATOM 52 CB ARG Z 6 235.773 255.515 296.485 1.00 33.82 ATOM 53 CG ARG Z 6 234.655 255.804 295.511 1.00 33.82 ATOM 54 CD ARG Z 6 235.004 255.290 294.135 1.00 33.82 ATOM 55 NE ARG Z 6 234.692 253.875 293.990 1.00 33.82 ATOM 56 CZ ARG Z 6 234.900 253.173 292.885 1.00 33.82 ATOM 57 NH1 ARG Z 6 235.438 253.724 291.810 1.00 33.82 ATOM 58 NH2 ARG Z 6 234.559 251.889 292.858 1.00 33.82 ATOM 59 N LYS Z 7 236.892 258.390 296.995 1.00 33.71 ATOM 60 CA LYS Z 7 236.806 259.842 296.900 1.00 33.71 ATOM 61 C LYS Z 7 238.054 260.423 296.255 1.00 33.71 ATOM 62 O LYS Z 7 237.967 261.322 295.415 1.00 33.71 ATOM 63 CB LYS Z 7 236.576 260.448 298.284 1.00 33.71 ATOM 64 CG LYS Z 7 236.415 261.952 298.257 1.00 33.71 ATOM 65 CD LYS Z 7 236.157 262.534 299.630 1.00 33.71 ATOM 66 CE LYS Z 7 234.732 262.279 300.048 1.00 33.71 ATOM 67 NZ LYS Z 7 234.387 262.967 301.311 1.00 33.71 ATOM 68 N LYS Z 8 239.229 259.923 296.640 1.00 33.87 ATOM 69 CA LYS Z 8 240.474 260.427 296.061 1.00 33.87 ATOM 70 C LYS Z 8 240.541 260.162 294.559 1.00 33.87 ATOM 71 O LYS Z 8 240.946 261.035 293.780 1.00 33.87 ATOM 72 CB LYS Z 8 241.670 259.800 296.773 1.00 33.87 ATOM 73 CG LYS Z 8 243.015 260.242 296.240 1.00 33.87 ATOM 74 CD LYS Z 8 244.139 259.446 296.871 1.00 33.87 ATOM 75 CE LYS Z 8 244.644 260.101 298.138 1.00 33.87 ATOM 76 NZ LYS Z 8 245.653 261.146 297.850 1.00 33.87 ATOM 77 N ARG Z 9 240.164 258.954 294.135 1.00 34.87 ATOM 78 CA ARG Z 9 240.148 258.631 292.714 1.00 34.87 ATOM 79 C ARG Z 9 239.157 259.508 291.964 1.00 34.87 ATOM 80 O ARG Z 9 239.441 259.970 290.852 1.00 34.87 ATOM 81 CB ARG Z 9 239.808 257.155 292.526 1.00 34.87 ATOM 82 CG ARG Z 9 239.487 256.766 291.101 1.00 34.87 ATOM 83 CD ARG Z 9 238.768 255.432 291.049 1.00 34.87 ATOM 84 NE ARG Z 9 239.705 254.317 291.058 1.00 34.87 ATOM 85 CZ ARG Z 9 239.400 253.079 290.700 1.00 34.87 ATOM 86 NH1 ARG Z 9 238.190 252.761 290.276 1.00 34.87 ATOM 87 NH2 ARG Z 9 240.333 252.136 290.771 1.00 34.87 ATOM 88 N THR Z 10 237.989 259.754 292.557 1.00 35.79 ATOM 89 CA THR Z 10 237.019 260.647 291.936 1.00 35.79 ATOM 90 C THR Z 10 237.572 262.061 291.807 1.00 35.79 ATOM 91 O THR Z 10 237.354 262.725 290.791 1.00 35.79 ATOM 92 CB THR Z 10 235.718 260.644 292.736 1.00 35.79 ATOM 93 OG1 THR Z 10 235.062 259.382 292.574 1.00 35.79 ATOM 94 CG2 THR Z 10 234.799 261.744 292.273 1.00 35.79 ATOM 95 N ARG Z 11 238.280 262.545 292.829 1.00 35.12 ATOM 96 CA ARG Z 11 238.871 263.878 292.755 1.00 35.12 ATOM 97 C ARG Z 11 239.909 263.963 291.646 1.00 35.12 ATOM 98 O ARG Z 11 239.961 264.954 290.905 1.00 35.12 ATOM 99 CB ARG Z 11 239.498 264.252 294.094 1.00 35.12 ATOM 100 CG ARG Z 11 238.512 264.322 295.233 1.00 35.12 ATOM 101 CD ARG Z 11 238.921 265.344 296.269 1.00 35.12 ATOM 102 NE ARG Z 11 237.864 265.532 297.253 1.00 35.12 ATOM 103 CZ ARG Z 11 237.989 266.246 298.360 1.00 35.12 ATOM 104 NH1 ARG Z 11 239.118 266.865 298.660 1.00 35.12 ATOM 105 NH2 ARG Z 11 236.953 266.350 299.184 1.00 35.12 ATOM 106 N ARG Z 12 240.753 262.939 291.523 1.00 36.82 ATOM 107 CA ARG Z 12 241.740 262.933 290.448 1.00 36.82 ATOM 108 C ARG Z 12 241.060 262.918 289.086 1.00 36.82 ATOM 109 O ARG Z 12 241.458 263.649 288.171 1.00 36.82 ATOM 110 CB ARG Z 12 242.670 261.732 290.596 1.00 36.82 ATOM 111 CG ARG Z 12 243.589 261.811 291.791 1.00 36.82 ATOM 112 CD ARG Z 12 244.786 260.896 291.622 1.00 36.82 ATOM 113 NE ARG Z 12 244.436 259.494 291.807 1.00 36.82 ATOM 114 CZ ARG Z 12 244.904 258.730 292.784 1.00 36.82 ATOM 115 NH1 ARG Z 12 245.753 259.200 293.684 1.00 36.82 ATOM 116 NH2 ARG Z 12 244.510 257.463 292.860 1.00 36.82 ATOM 117 N LEU Z 13 240.016 262.104 288.944 1.00 38.17 ATOM 118 CA LEU Z 13 239.276 262.039 287.690 1.00 38.17 ATOM 119 C LEU Z 13 238.618 263.377 287.372 1.00 38.17 ATOM 120 O LEU Z 13 238.572 263.798 286.211 1.00 38.17 ATOM 121 CB LEU Z 13 238.239 260.921 287.787 1.00 38.17 ATOM 122 CG LEU Z 13 237.349 260.560 286.607 1.00 38.17 ATOM 123 CD1 LEU Z 13 238.193 260.070 285.459 1.00 38.17 ATOM 124 CD2 LEU Z 13 236.364 259.495 287.033 1.00 38.17 ATOM 125 N LYS Z 14 238.101 264.056 288.397 1.00 38.22 ATOM 126 CA LYS Z 14 237.439 265.343 288.216 1.00 38.22 ATOM 127 C LYS Z 14 238.425 266.421 287.783 1.00 38.22 ATOM 128 O LYS Z 14 238.118 267.237 286.904 1.00 38.22 ATOM 129 CB LYS Z 14 236.732 265.732 289.515 1.00 38.22 ATOM 130 CG LYS Z 14 235.843 266.945 289.423 1.00 38.22 ATOM 131 CD LYS Z 14 234.873 266.994 290.590 1.00 38.22 ATOM 132 CE LYS Z 14 234.033 268.264 290.549 1.00 38.22 ATOM 133 NZ LYS Z 14 232.997 268.289 291.614 1.00 38.22 ATOM 134 N ARG Z 15 239.619 266.438 288.377 1.00 40.72 ATOM 135 CA ARG Z 15 240.639 267.371 287.911 1.00 40.72 ATOM 136 C ARG Z 15 241.066 267.060 286.487 1.00 40.72 ATOM 137 O ARG Z 15 241.290 267.975 285.688 1.00 40.72 ATOM 138 CB ARG Z 15 241.864 267.356 288.812 1.00 40.72 ATOM 139 CG ARG Z 15 241.672 267.842 290.213 1.00 40.72 ATOM 140 CD ARG Z 15 243.006 267.714 290.896 1.00 40.72 ATOM 141 NE ARG Z 15 243.967 268.630 290.297 1.00 40.72 ATOM 142 CZ ARG Z 15 244.987 268.243 289.544 1.00 40.72 ATOM 143 NH1 ARG Z 15 245.178 266.969 289.242 1.00 40.72 ATOM 144 NH2 ARG Z 15 245.818 269.159 289.058 1.00 40.72 ATOM 145 N LYS Z 16 241.216 265.777 286.159 1.00 40.09 ATOM 146 CA LYS Z 16 241.572 265.411 284.795 1.00 40.09 ATOM 147 C LYS Z 16 240.515 265.897 283.814 1.00 40.09 ATOM 148 O LYS Z 16 240.841 266.391 282.729 1.00 40.09 ATOM 149 CB LYS Z 16 241.755 263.897 284.699 1.00 40.09 ATOM 150 CG LYS Z 16 242.149 263.364 283.331 1.00 40.09 ATOM 151 CD LYS Z 16 240.915 262.956 282.547 1.00 40.09 ATOM 152 CE LYS Z 16 240.286 261.718 283.137 1.00 40.09 ATOM 153 NZ LYS Z 16 239.081 261.299 282.379 1.00 40.09 ATOM 154 N ARG Z 17 239.240 265.746 284.173 1.00 40.58 ATOM 155 CA ARG Z 17 238.170 266.264 283.331 1.00 40.58 ATOM 156 C ARG Z 17 238.256 267.776 283.175 1.00 40.58 ATOM 157 O ARG Z 17 238.109 268.293 282.064 1.00 40.58 ATOM 158 CB ARG Z 17 236.814 265.862 283.897 1.00 40.58 ATOM 159 CG ARG Z 17 236.112 264.812 283.081 1.00 40.58 ATOM 160 CD ARG Z 17 234.697 264.622 283.553 1.00 40.58 ATOM 161 NE ARG Z 17 234.680 264.252 284.960 1.00 40.58 ATOM 162 CZ ARG Z 17 234.711 263.002 285.397 1.00 40.58 ATOM 163 NH1 ARG Z 17 234.746 261.981 284.559 1.00 40.58 ATOM 164 NH2 ARG Z 17 234.714 262.773 286.706 1.00 40.58 ATOM 165 N ARG Z 18 238.500 268.510 284.265 1.00 41.29 ATOM 166 CA ARG Z 18 238.629 269.957 284.101 1.00 41.29 ATOM 167 C ARG Z 18 239.786 270.294 283.173 1.00 41.29 ATOM 168 O ARG Z 18 239.667 271.184 282.328 1.00 41.29 ATOM 169 CB ARG Z 18 238.786 270.697 285.433 1.00 41.29 ATOM 170 CG ARG Z 18 237.551 270.681 286.310 1.00 41.29 ATOM 171 CD ARG Z 18 237.725 271.512 287.581 1.00 41.29 ATOM 172 NE ARG Z 18 238.671 270.976 288.552 1.00 41.29 ATOM 173 CZ ARG Z 18 239.822 271.556 288.864 1.00 41.29 ATOM 174 NH1 ARG Z 18 240.225 272.663 288.262 1.00 41.29 ATOM 175 NH2 ARG Z 18 240.587 271.015 289.808 1.00 41.29 ATOM 176 N LYS Z 19 240.907 269.584 283.306 1.00 41.35 ATOM 177 CA LYS Z 19 242.055 269.861 282.450 1.00 41.35 ATOM 178 C LYS Z 19 241.733 269.578 280.987 1.00 41.35 ATOM 179 O LYS Z 19 242.123 270.343 280.099 1.00 41.35 ATOM 180 CB LYS Z 19 243.258 269.027 282.892 1.00 41.35 ATOM 181 CG LYS Z 19 243.741 269.296 284.303 1.00 41.35 ATOM 182 CD LYS Z 19 244.359 270.665 284.451 1.00 41.35 ATOM 183 CE LYS Z 19 244.821 270.891 285.885 1.00 41.35 ATOM 184 NZ LYS Z 19 245.970 270.015 286.249 1.00 41.35 ATOM 185 N VAL Z 20 241.019 268.486 280.715 1.00 41.30 ATOM 186 CA VAL Z 20 240.721 268.118 279.333 1.00 41.30 ATOM 187 C VAL Z 20 239.741 269.107 278.707 1.00 41.30 ATOM 188 O VAL Z 20 239.933 269.562 277.571 1.00 41.30 ATOM 189 CB VAL Z 20 240.195 266.674 279.268 1.00 41.30 ATOM 190 CG1 VAL Z 20 239.616 266.378 277.896 1.00 41.30 ATOM 191 CG2 VAL Z 20 241.311 265.700 279.597 1.00 41.30 ATOM 192 N ARG Z 21 238.677 269.463 279.434 1.00 40.75 ATOM 193 CA ARG Z 21 237.774 270.488 278.919 1.00 40.75 ATOM 194 C ARG Z 21 238.473 271.833 278.760 1.00 40.75 ATOM 195 O ARG Z 21 238.155 272.584 277.832 1.00 40.75 ATOM 196 CB ARG Z 21 236.532 270.642 279.801 1.00 40.75 ATOM 197 CG ARG Z 21 235.435 269.567 279.667 1.00 40.75 ATOM 198 CD ARG Z 21 235.674 268.338 280.513 1.00 40.75 ATOM 199 NE ARG Z 21 234.529 267.436 280.566 1.00 40.75 ATOM 200 CZ ARG Z 21 234.340 266.399 279.764 1.00 40.75 ATOM 201 NH1 ARG Z 21 235.196 266.107 278.801 1.00 40.75 ATOM 202 NH2 ARG Z 21 233.268 265.632 279.938 1.00 40.75 ATOM 203 N ALA Z 22 239.420 272.162 279.643 1.00 42.86 ATOM 204 CA ALA Z 22 240.121 273.436 279.526 1.00 42.86 ATOM 205 C ALA Z 22 241.056 273.447 278.326 1.00 42.86 ATOM 206 O ALA Z 22 241.217 274.481 277.670 1.00 42.86 ATOM 207 CB ALA Z 22 240.892 273.729 280.809 1.00 42.86 ATOM 208 N ARG Z 23 241.700 272.312 278.037 1.00 41.29 ATOM 209 CA ARG Z 23 242.460 272.192 276.798 1.00 41.29 ATOM 210 C ARG Z 23 241.547 272.366 275.594 1.00 41.29 ATOM 211 O ARG Z 23 241.895 273.063 274.633 1.00 41.29 ATOM 212 CB ARG Z 23 243.177 270.844 276.735 1.00 41.29 ATOM 213 CG ARG Z 23 243.661 270.469 275.334 1.00 41.29 ATOM 214 CD ARG Z 23 244.344 269.107 275.316 1.00 41.29 ATOM 215 NE ARG Z 23 245.034 268.817 274.062 1.00 41.29 ATOM 216 CZ ARG Z 23 246.162 269.398 273.671 1.00 41.29 ATOM 217 NH1 ARG Z 23 246.713 270.376 274.372 1.00 41.29 ATOM 218 NH2 ARG Z 23 246.757 268.983 272.553 1.00 41.29 ATOM 219 N SER Z 24 240.366 271.758 275.635 1.00 44.86 ATOM 220 CA SER Z 24 239.375 272.054 274.616 1.00 44.86 ATOM 221 C SER Z 24 238.877 273.488 274.785 1.00 44.86 ATOM 222 O SER Z 24 239.122 274.146 275.799 1.00 44.86 ATOM 223 CB SER Z 24 238.209 271.070 274.692 1.00 44.86 ATOM 224 OG SER Z 24 238.620 269.760 274.343 1.00 44.86 ATOM 225 N LYS Z 25 238.176 273.977 273.767 1.00 47.53 ATOM 226 CA LYS Z 25 237.629 275.332 273.801 1.00 47.53 ATOM 227 C LYS Z 25 236.179 275.354 273.334 1.00 47.53 ATOM 228 O LYS Z 25 235.754 276.283 272.647 1.00 47.53 ATOM 229 CB LYS Z 25 238.470 276.277 272.938 1.00 47.53 ATOM 230 CG LYS Z 25 239.669 276.890 273.652 1.00 47.53 ATOM 231 CD LYS Z 25 239.323 277.328 275.069 1.00 47.53 ATOM 232 CE LYS Z 25 240.435 278.183 275.665 1.00 47.53 ATOM 233 NZ LYS Z 25 240.300 278.371 277.138 1.00 47.53 TER