HEADER RIBOSOME 31-DEC-69 8CG8 TITLE Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome TITLE 2 with ligands and eEF2 in the presence of sordarin COMPND MOL_ID: 58; COMPND 2 MOLECULE: 60S ribosomal protein L41; COMPND 3 CHAIN: Z; EXPDTA ELECTRON MICROSCOPY DBREF 8CG8 Z 1 25 UNP A0A8H8UM A0A8H8UMB4_ 1 25 SEQRES 1 Z 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 Z 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET Z 1 235.590 248.044 294.362 1.00 42.60 ATOM 2 CA MET Z 1 236.144 249.360 294.661 1.00 42.60 ATOM 3 C MET Z 1 235.761 249.872 296.039 1.00 42.60 ATOM 4 O MET Z 1 234.583 249.918 296.393 1.00 42.60 ATOM 5 CB MET Z 1 235.697 250.384 293.617 1.00 42.60 ATOM 6 CG MET Z 1 236.230 250.142 292.228 1.00 42.60 ATOM 7 SD MET Z 1 238.028 250.199 292.160 1.00 42.60 ATOM 8 CE MET Z 1 238.318 251.943 292.454 1.00 42.60 ATOM 9 N ARG Z 2 236.771 250.250 296.816 1.00 36.56 ATOM 10 CA ARG Z 2 236.531 251.106 297.966 1.00 36.56 ATOM 11 C ARG Z 2 235.912 252.413 297.491 1.00 36.56 ATOM 12 O ARG Z 2 236.249 252.918 296.417 1.00 36.56 ATOM 13 CB ARG Z 2 237.840 251.381 298.705 1.00 36.56 ATOM 14 CG ARG Z 2 238.408 250.184 299.441 1.00 36.56 ATOM 15 CD ARG Z 2 239.621 250.578 300.267 1.00 36.56 ATOM 16 NE ARG Z 2 239.330 251.657 301.204 1.00 36.56 ATOM 17 CZ ARG Z 2 240.188 252.115 302.105 1.00 36.56 ATOM 18 NH1 ARG Z 2 241.407 251.612 302.217 1.00 36.56 ATOM 19 NH2 ARG Z 2 239.816 253.104 302.912 1.00 36.56 ATOM 20 N ALA Z 3 234.977 252.948 298.279 1.00 36.46 ATOM 21 CA ALA Z 3 234.401 254.243 297.933 1.00 36.46 ATOM 22 C ALA Z 3 235.471 255.324 297.873 1.00 36.46 ATOM 23 O ALA Z 3 235.385 256.237 297.044 1.00 36.46 ATOM 24 CB ALA Z 3 233.306 254.622 298.930 1.00 36.46 ATOM 25 N LYS Z 4 236.497 255.219 298.720 1.00 35.09 ATOM 26 CA LYS Z 4 237.603 256.171 298.686 1.00 35.09 ATOM 27 C LYS Z 4 238.320 256.137 297.340 1.00 35.09 ATOM 28 O LYS Z 4 238.604 257.184 296.746 1.00 35.09 ATOM 29 CB LYS Z 4 238.579 255.873 299.823 1.00 35.09 ATOM 30 CG LYS Z 4 239.512 257.018 300.166 1.00 35.09 ATOM 31 CD LYS Z 4 240.672 256.535 301.021 1.00 35.09 ATOM 32 CE LYS Z 4 240.351 256.649 302.501 1.00 35.09 ATOM 33 NZ LYS Z 4 241.535 257.082 303.291 1.00 35.09 ATOM 34 N TRP Z 5 238.619 254.937 296.839 1.00 38.09 ATOM 35 CA TRP Z 5 239.338 254.833 295.575 1.00 38.09 ATOM 36 C TRP Z 5 238.448 255.157 294.382 1.00 38.09 ATOM 37 O TRP Z 5 238.934 255.705 293.387 1.00 38.09 ATOM 38 CB TRP Z 5 239.942 253.436 295.427 1.00 38.09 ATOM 39 CG TRP Z 5 240.801 252.982 296.590 1.00 38.09 ATOM 40 CD1 TRP Z 5 240.926 251.705 297.053 1.00 38.09 ATOM 41 CD2 TRP Z 5 241.679 253.786 297.402 1.00 38.09 ATOM 42 NE1 TRP Z 5 241.802 251.663 298.108 1.00 38.09 ATOM 43 CE2 TRP Z 5 242.279 252.925 298.342 1.00 38.09 ATOM 44 CE3 TRP Z 5 242.009 255.146 297.430 1.00 38.09 ATOM 45 CZ2 TRP Z 5 243.185 253.379 299.297 1.00 38.09 ATOM 46 CZ3 TRP Z 5 242.906 255.593 298.380 1.00 38.09 ATOM 47 CH2 TRP Z 5 243.484 254.713 299.300 1.00 38.09 ATOM 48 N ARG Z 6 237.152 254.850 294.468 1.00 40.14 ATOM 49 CA ARG Z 6 236.213 255.335 293.461 1.00 40.14 ATOM 50 C ARG Z 6 236.208 256.856 293.409 1.00 40.14 ATOM 51 O ARG Z 6 236.229 257.449 292.324 1.00 40.14 ATOM 52 CB ARG Z 6 234.808 254.805 293.751 1.00 40.14 ATOM 53 CG ARG Z 6 233.742 255.284 292.773 1.00 40.14 ATOM 54 CD ARG Z 6 233.942 254.770 291.357 1.00 40.14 ATOM 55 NE ARG Z 6 233.794 253.323 291.257 1.00 40.14 ATOM 56 CZ ARG Z 6 234.143 252.608 290.197 1.00 40.14 ATOM 57 NH1 ARG Z 6 234.674 253.175 289.126 1.00 40.14 ATOM 58 NH2 ARG Z 6 233.946 251.293 290.207 1.00 40.14 ATOM 59 N LYS Z 7 236.201 257.505 294.576 1.00 38.32 ATOM 60 CA LYS Z 7 236.223 258.962 294.615 1.00 38.32 ATOM 61 C LYS Z 7 237.530 259.509 294.054 1.00 38.32 ATOM 62 O LYS Z 7 237.527 260.505 293.325 1.00 38.32 ATOM 63 CB LYS Z 7 235.998 259.447 296.047 1.00 38.32 ATOM 64 CG LYS Z 7 236.092 260.952 296.225 1.00 38.32 ATOM 65 CD LYS Z 7 235.047 261.446 297.213 1.00 38.32 ATOM 66 CE LYS Z 7 235.675 261.841 298.536 1.00 38.32 ATOM 67 NZ LYS Z 7 234.731 262.610 299.394 1.00 38.32 ATOM 68 N LYS Z 8 238.658 258.876 294.386 1.00 38.09 ATOM 69 CA LYS Z 8 239.944 259.330 293.859 1.00 38.09 ATOM 70 C LYS Z 8 240.007 259.192 292.341 1.00 38.09 ATOM 71 O LYS Z 8 240.481 260.099 291.643 1.00 38.09 ATOM 72 CB LYS Z 8 241.084 258.553 294.515 1.00 38.09 ATOM 73 CG LYS Z 8 242.460 259.134 294.240 1.00 38.09 ATOM 74 CD LYS Z 8 243.560 258.233 294.771 1.00 38.09 ATOM 75 CE LYS Z 8 244.893 258.960 294.804 1.00 38.09 ATOM 76 NZ LYS Z 8 245.078 259.721 296.069 1.00 38.09 ATOM 77 N ARG Z 9 239.533 258.061 291.811 1.00 39.64 ATOM 78 CA ARG Z 9 239.502 257.875 290.364 1.00 39.64 ATOM 79 C ARG Z 9 238.584 258.895 289.704 1.00 39.64 ATOM 80 O ARG Z 9 238.909 259.440 288.641 1.00 39.64 ATOM 81 CB ARG Z 9 239.059 256.449 290.032 1.00 39.64 ATOM 82 CG ARG Z 9 238.567 256.258 288.607 1.00 39.64 ATOM 83 CD ARG Z 9 237.848 254.928 288.444 1.00 39.64 ATOM 84 NE ARG Z 9 238.758 253.795 288.553 1.00 39.64 ATOM 85 CZ ARG Z 9 238.434 252.543 288.261 1.00 39.64 ATOM 86 NH1 ARG Z 9 237.222 252.224 287.836 1.00 39.64 ATOM 87 NH2 ARG Z 9 239.348 251.587 288.397 1.00 39.64 ATOM 88 N THR Z 10 237.433 259.167 290.321 1.00 38.33 ATOM 89 CA THR Z 10 236.523 260.173 289.785 1.00 38.33 ATOM 90 C THR Z 10 237.161 261.558 289.796 1.00 38.33 ATOM 91 O THR Z 10 236.954 262.348 288.872 1.00 38.33 ATOM 92 CB THR Z 10 235.217 260.174 290.577 1.00 38.33 ATOM 93 OG1 THR Z 10 234.760 258.827 290.744 1.00 38.33 ATOM 94 CG2 THR Z 10 234.162 260.956 289.829 1.00 38.33 ATOM 95 N ARG Z 11 237.922 261.878 290.846 1.00 36.79 ATOM 96 CA ARG Z 11 238.616 263.163 290.898 1.00 36.79 ATOM 97 C ARG Z 11 239.672 263.269 289.806 1.00 36.79 ATOM 98 O ARG Z 11 239.835 264.330 289.191 1.00 36.79 ATOM 99 CB ARG Z 11 239.244 263.369 292.275 1.00 36.79 ATOM 100 CG ARG Z 11 238.233 263.486 293.399 1.00 36.79 ATOM 101 CD ARG Z 11 238.612 264.579 294.374 1.00 36.79 ATOM 102 NE ARG Z 11 237.579 264.779 295.382 1.00 36.79 ATOM 103 CZ ARG Z 11 237.820 265.001 296.666 1.00 36.79 ATOM 104 NH1 ARG Z 11 239.055 265.058 297.137 1.00 36.79 ATOM 105 NH2 ARG Z 11 236.797 265.169 297.499 1.00 36.79 ATOM 106 N ARG Z 12 240.411 262.185 289.557 1.00 39.48 ATOM 107 CA ARG Z 12 241.372 262.195 288.456 1.00 39.48 ATOM 108 C ARG Z 12 240.664 262.387 287.119 1.00 39.48 ATOM 109 O ARG Z 12 241.135 263.136 286.250 1.00 39.48 ATOM 110 CB ARG Z 12 242.180 260.899 288.449 1.00 39.48 ATOM 111 CG ARG Z 12 243.033 260.684 289.685 1.00 39.48 ATOM 112 CD ARG Z 12 244.360 260.040 289.325 1.00 39.48 ATOM 113 NE ARG Z 12 244.856 259.180 290.392 1.00 39.48 ATOM 114 CZ ARG Z 12 244.587 257.885 290.496 1.00 39.48 ATOM 115 NH1 ARG Z 12 243.817 257.266 289.617 1.00 39.48 ATOM 116 NH2 ARG Z 12 245.102 257.196 291.510 1.00 39.48 ATOM 117 N LEU Z 13 239.524 261.717 286.942 1.00 39.49 ATOM 118 CA LEU Z 13 238.732 261.885 285.730 1.00 39.49 ATOM 119 C LEU Z 13 238.257 263.326 285.579 1.00 39.49 ATOM 120 O LEU Z 13 238.273 263.885 284.476 1.00 39.49 ATOM 121 CB LEU Z 13 237.547 260.921 285.756 1.00 39.49 ATOM 122 CG LEU Z 13 236.645 260.913 284.528 1.00 39.49 ATOM 123 CD1 LEU Z 13 237.457 260.470 283.332 1.00 39.49 ATOM 124 CD2 LEU Z 13 235.463 259.986 284.750 1.00 39.49 ATOM 125 N LYS Z 14 237.817 263.938 286.681 1.00 38.64 ATOM 126 CA LYS Z 14 237.373 265.327 286.648 1.00 38.64 ATOM 127 C LYS Z 14 238.520 266.266 286.303 1.00 38.64 ATOM 128 O LYS Z 14 238.326 267.255 285.591 1.00 38.64 ATOM 129 CB LYS Z 14 236.752 265.713 287.990 1.00 38.64 ATOM 130 CG LYS Z 14 235.384 265.103 288.243 1.00 38.64 ATOM 131 CD LYS Z 14 234.691 265.764 289.423 1.00 38.64 ATOM 132 CE LYS Z 14 234.519 267.256 289.194 1.00 38.64 ATOM 133 NZ LYS Z 14 233.831 267.919 290.335 1.00 38.64 ATOM 134 N ARG Z 15 239.718 265.990 286.824 1.00 38.99 ATOM 135 CA ARG Z 15 240.879 266.798 286.459 1.00 38.99 ATOM 136 C ARG Z 15 241.190 266.675 284.971 1.00 38.99 ATOM 137 O ARG Z 15 241.521 267.669 284.314 1.00 38.99 ATOM 138 CB ARG Z 15 242.091 266.398 287.300 1.00 38.99 ATOM 139 CG ARG Z 15 242.136 267.068 288.664 1.00 38.99 ATOM 140 CD ARG Z 15 243.401 266.716 289.429 1.00 38.99 ATOM 141 NE ARG Z 15 243.433 265.315 289.831 1.00 38.99 ATOM 142 CZ ARG Z 15 244.405 264.765 290.545 1.00 38.99 ATOM 143 NH1 ARG Z 15 245.443 265.472 290.961 1.00 38.99 ATOM 144 NH2 ARG Z 15 244.333 263.473 290.854 1.00 38.99 ATOM 145 N LYS Z 16 241.094 265.460 284.424 1.00 40.10 ATOM 146 CA LYS Z 16 241.280 265.289 282.984 1.00 40.10 ATOM 147 C LYS Z 16 240.228 266.062 282.193 1.00 40.10 ATOM 148 O LYS Z 16 240.539 266.685 281.168 1.00 40.10 ATOM 149 CB LYS Z 16 241.243 263.805 282.620 1.00 40.10 ATOM 150 CG LYS Z 16 242.412 263.003 283.169 1.00 40.10 ATOM 151 CD LYS Z 16 242.403 261.578 282.639 1.00 40.10 ATOM 152 CE LYS Z 16 241.309 260.752 283.294 1.00 40.10 ATOM 153 NZ LYS Z 16 241.357 259.327 282.868 1.00 40.10 ATOM 154 N ARG Z 17 238.974 266.026 282.652 1.00 39.96 ATOM 155 CA ARG Z 17 237.917 266.798 282.004 1.00 39.96 ATOM 156 C ARG Z 17 238.211 268.291 282.056 1.00 39.96 ATOM 157 O ARG Z 17 238.003 269.009 281.072 1.00 39.96 ATOM 158 CB ARG Z 17 236.565 266.502 282.655 1.00 39.96 ATOM 159 CG ARG Z 17 236.040 265.095 282.431 1.00 39.96 ATOM 160 CD ARG Z 17 234.525 265.068 282.571 1.00 39.96 ATOM 161 NE ARG Z 17 233.970 263.732 282.395 1.00 39.96 ATOM 162 CZ ARG Z 17 233.686 262.902 283.389 1.00 39.96 ATOM 163 NH1 ARG Z 17 233.905 263.234 284.651 1.00 39.96 ATOM 164 NH2 ARG Z 17 233.167 261.709 283.110 1.00 39.96 ATOM 165 N ARG Z 18 238.682 268.778 283.205 1.00 40.07 ATOM 166 CA ARG Z 18 239.020 270.191 283.328 1.00 40.07 ATOM 167 C ARG Z 18 240.148 270.565 282.379 1.00 40.07 ATOM 168 O ARG Z 18 240.112 271.628 281.751 1.00 40.07 ATOM 169 CB ARG Z 18 239.402 270.520 284.771 1.00 40.07 ATOM 170 CG ARG Z 18 238.221 270.635 285.720 1.00 40.07 ATOM 171 CD ARG Z 18 238.542 271.563 286.879 1.00 40.07 ATOM 172 NE ARG Z 18 239.674 271.088 287.666 1.00 40.07 ATOM 173 CZ ARG Z 18 239.567 270.370 288.776 1.00 40.07 ATOM 174 NH1 ARG Z 18 238.388 270.027 289.266 1.00 40.07 ATOM 175 NH2 ARG Z 18 240.672 269.989 289.411 1.00 40.07 ATOM 176 N LYS Z 19 241.153 269.696 282.250 1.00 40.82 ATOM 177 CA LYS Z 19 242.256 269.979 281.335 1.00 40.82 ATOM 178 C LYS Z 19 241.780 270.027 279.887 1.00 40.82 ATOM 179 O LYS Z 19 242.152 270.937 279.134 1.00 40.82 ATOM 180 CB LYS Z 19 243.359 268.934 281.500 1.00 40.82 ATOM 181 CG LYS Z 19 244.095 269.012 282.826 1.00 40.82 ATOM 182 CD LYS Z 19 245.125 267.901 282.949 1.00 40.82 ATOM 183 CE LYS Z 19 246.297 268.129 282.008 1.00 40.82 ATOM 184 NZ LYS Z 19 247.107 269.315 282.401 1.00 40.82 ATOM 185 N VAL Z 20 240.948 269.065 279.478 1.00 41.31 ATOM 186 CA VAL Z 20 240.503 269.043 278.086 1.00 41.31 ATOM 187 C VAL Z 20 239.582 270.226 277.797 1.00 41.31 ATOM 188 O VAL Z 20 239.632 270.816 276.709 1.00 41.31 ATOM 189 CB VAL Z 20 239.850 267.689 277.735 1.00 41.31 ATOM 190 CG1 VAL Z 20 238.508 267.510 278.425 1.00 41.31 ATOM 191 CG2 VAL Z 20 239.700 267.549 276.226 1.00 41.31 ATOM 192 N ARG Z 21 238.745 270.612 278.766 1.00 41.49 ATOM 193 CA ARG Z 21 237.886 271.774 278.567 1.00 41.49 ATOM 194 C ARG Z 21 238.684 273.071 278.576 1.00 41.49 ATOM 195 O ARG Z 21 238.290 274.041 277.922 1.00 41.49 ATOM 196 CB ARG Z 21 236.787 271.813 279.628 1.00 41.49 ATOM 197 CG ARG Z 21 235.688 270.785 279.409 1.00 41.49 ATOM 198 CD ARG Z 21 234.512 271.016 280.342 1.00 41.49 ATOM 199 NE ARG Z 21 233.842 272.282 280.071 1.00 41.49 ATOM 200 CZ ARG Z 21 233.037 272.902 280.922 1.00 41.49 ATOM 201 NH1 ARG Z 21 232.780 272.403 282.120 1.00 41.49 ATOM 202 NH2 ARG Z 21 232.475 274.053 280.562 1.00 41.49 ATOM 203 N ALA Z 22 239.788 273.121 279.326 1.00 40.39 ATOM 204 CA ALA Z 22 240.666 274.282 279.259 1.00 40.39 ATOM 205 C ALA Z 22 241.345 274.378 277.900 1.00 40.39 ATOM 206 O ALA Z 22 241.501 275.477 277.354 1.00 40.39 ATOM 207 CB ALA Z 22 241.704 274.221 280.378 1.00 40.39 ATOM 208 N ARG Z 23 241.767 273.240 277.342 1.00 39.49 ATOM 209 CA ARG Z 23 242.325 273.250 275.992 1.00 39.49 ATOM 210 C ARG Z 23 241.295 273.721 274.972 1.00 39.49 ATOM 211 O ARG Z 23 241.586 274.576 274.127 1.00 39.49 ATOM 212 CB ARG Z 23 242.851 271.865 275.613 1.00 39.49 ATOM 213 CG ARG Z 23 243.867 271.277 276.572 1.00 39.49 ATOM 214 CD ARG Z 23 244.405 269.964 276.031 1.00 39.49 ATOM 215 NE ARG Z 23 244.569 270.014 274.583 1.00 39.49 ATOM 216 CZ ARG Z 23 245.719 269.832 273.949 1.00 39.49 ATOM 217 NH1 ARG Z 23 246.838 269.575 274.606 1.00 39.49 ATOM 218 NH2 ARG Z 23 245.747 269.910 272.621 1.00 39.49 ATOM 219 N SER Z 24 240.083 273.175 275.034 1.00 42.20 ATOM 220 CA SER Z 24 239.045 273.523 274.071 1.00 42.20 ATOM 221 C SER Z 24 238.403 274.852 274.453 1.00 42.20 ATOM 222 O SER Z 24 237.715 274.945 275.475 1.00 42.20 ATOM 223 CB SER Z 24 237.995 272.417 274.001 1.00 42.20 ATOM 224 OG SER Z 24 237.659 271.948 275.294 1.00 42.20 ATOM 225 N LYS Z 25 238.598 275.869 273.620 1.00 46.54 ATOM 226 CA LYS Z 25 238.032 277.188 273.884 1.00 46.54 ATOM 227 C LYS Z 25 237.253 277.702 272.679 1.00 46.54 ATOM 228 O LYS Z 25 236.941 278.889 272.590 1.00 46.54 ATOM 229 CB LYS Z 25 239.135 278.183 274.259 1.00 46.54 ATOM 230 CG LYS Z 25 239.906 277.821 275.521 1.00 46.54 ATOM 231 CD LYS Z 25 238.977 277.636 276.712 1.00 46.54 ATOM 232 CE LYS Z 25 238.380 278.959 277.164 1.00 46.54 ATOM 233 NZ LYS Z 25 237.491 278.792 278.347 1.00 46.54 TER