HEADER Ribosome/RNA 31-DEC-69 8EVR TITLE Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) TITLE 2 internal ribosome entry site (IRES), eEF2, GDP, and sordarin, TITLE 3 Structure II COMPND MOL_ID: 76; COMPND 2 MOLECULE: 60S ribosomal protein L41-A; COMPND 3 CHAIN: An; EXPDTA ELECTRON MICROSCOPY DBREF 8EVR A 1 25 UNP P0CX86 RL41A_YEAST 1 25 SEQRES 1 An 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 An 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET A 1 181.359 173.029 229.143 1.00 62.28 ATOM 2 CA MET A 1 182.191 172.278 228.216 1.00 58.05 ATOM 3 C MET A 1 181.281 171.742 227.103 1.00 60.57 ATOM 4 O MET A 1 181.214 170.539 226.846 1.00 58.37 ATOM 5 CB MET A 1 182.943 171.153 228.950 1.00 59.34 ATOM 6 CG MET A 1 183.939 170.332 228.109 1.00 61.94 ATOM 7 SD MET A 1 184.848 169.096 229.056 1.00 61.09 ATOM 8 CE MET A 1 185.787 168.300 227.755 1.00 57.16 ATOM 9 N ARG A 2 180.507 172.631 226.487 1.00 44.34 ATOM 10 CA ARG A 2 179.806 172.247 225.272 1.00 46.76 ATOM 11 C ARG A 2 180.836 171.986 224.182 1.00 51.03 ATOM 12 O ARG A 2 181.833 172.704 224.068 1.00 53.21 ATOM 13 CB ARG A 2 178.816 173.331 224.845 1.00 45.84 ATOM 14 CG ARG A 2 178.033 172.991 223.584 1.00 44.27 ATOM 15 CD ARG A 2 176.950 174.014 223.295 1.00 50.89 ATOM 16 NE ARG A 2 176.281 173.760 222.025 1.00 47.83 ATOM 17 CZ ARG A 2 175.281 174.487 221.545 1.00 41.84 ATOM 18 NH1 ARG A 2 174.804 175.527 222.207 1.00 42.73 ATOM 19 NH2 ARG A 2 174.748 174.162 220.372 1.00 42.56 ATOM 20 N ALA A 3 180.606 170.935 223.392 1.00 44.82 ATOM 21 CA ALA A 3 181.617 170.504 222.431 1.00 42.71 ATOM 22 C ALA A 3 181.832 171.538 221.330 1.00 41.15 ATOM 23 O ALA A 3 182.964 171.716 220.865 1.00 40.94 ATOM 24 CB ALA A 3 181.249 169.144 221.846 1.00 40.39 ATOM 25 N LYS A 4 180.763 172.207 220.880 1.00 48.07 ATOM 26 CA LYS A 4 180.916 173.258 219.875 1.00 48.24 ATOM 27 C LYS A 4 181.814 174.379 220.373 1.00 46.18 ATOM 28 O LYS A 4 182.687 174.861 219.643 1.00 44.85 ATOM 29 CB LYS A 4 179.559 173.840 219.481 1.00 45.34 ATOM 30 CG LYS A 4 178.763 173.034 218.496 1.00 46.48 ATOM 31 CD LYS A 4 177.424 173.697 218.256 1.00 41.74 ATOM 32 CE LYS A 4 177.597 175.022 217.559 1.00 38.36 ATOM 33 NZ LYS A 4 176.293 175.642 217.207 1.00 42.30 ATOM 34 N TRP A 5 181.603 174.822 221.610 1.00 41.32 ATOM 35 CA TRP A 5 182.409 175.919 222.124 1.00 38.29 ATOM 36 C TRP A 5 183.813 175.460 222.487 1.00 34.63 ATOM 37 O TRP A 5 184.753 176.259 222.426 1.00 44.01 ATOM 38 CB TRP A 5 181.701 176.574 223.309 1.00 37.21 ATOM 39 CG TRP A 5 180.226 176.901 223.082 1.00 26.81 ATOM 40 CD1 TRP A 5 179.227 176.760 223.995 1.00 34.80 ATOM 41 CD2 TRP A 5 179.599 177.421 221.890 1.00 31.92 ATOM 42 NE1 TRP A 5 178.028 177.151 223.463 1.00 37.97 ATOM 43 CE2 TRP A 5 178.226 177.559 222.172 1.00 37.34 ATOM 44 CE3 TRP A 5 180.060 177.785 220.619 1.00 39.27 ATOM 45 CZ2 TRP A 5 177.316 178.037 221.236 1.00 39.05 ATOM 46 CZ3 TRP A 5 179.154 178.251 219.692 1.00 40.21 ATOM 47 CH2 TRP A 5 177.798 178.375 220.005 1.00 42.44 ATOM 48 N ARG A 6 183.975 174.192 222.871 1.00 34.52 ATOM 49 CA ARG A 6 185.317 173.640 223.019 1.00 44.93 ATOM 50 C ARG A 6 186.001 173.542 221.662 1.00 41.16 ATOM 51 O ARG A 6 187.215 173.753 221.549 1.00 38.16 ATOM 52 CB ARG A 6 185.249 172.273 223.702 1.00 44.17 ATOM 53 CG ARG A 6 186.580 171.546 223.808 1.00 40.72 ATOM 54 CD ARG A 6 187.578 172.337 224.635 1.00 38.91 ATOM 55 NE ARG A 6 187.168 172.447 226.029 1.00 43.98 ATOM 56 CZ ARG A 6 187.511 171.590 226.981 1.00 44.60 ATOM 57 NH1 ARG A 6 188.273 170.540 226.724 1.00 45.16 ATOM 58 NH2 ARG A 6 187.078 171.791 228.223 1.00 44.38 ATOM 59 N LYS A 7 185.228 173.221 220.621 1.00 34.90 ATOM 60 CA LYS A 7 185.739 173.260 219.255 1.00 37.49 ATOM 61 C LYS A 7 186.126 174.678 218.856 1.00 40.42 ATOM 62 O LYS A 7 187.132 174.882 218.171 1.00 47.42 ATOM 63 CB LYS A 7 184.692 172.699 218.296 1.00 32.74 ATOM 64 CG LYS A 7 185.233 172.095 217.019 1.00 33.09 ATOM 65 CD LYS A 7 184.110 171.389 216.280 1.00 36.18 ATOM 66 CE LYS A 7 184.571 170.802 214.961 1.00 34.47 ATOM 67 NZ LYS A 7 183.429 170.270 214.166 1.00 37.07 ATOM 68 N LYS A 8 185.320 175.668 219.245 1.00 40.27 ATOM 69 CA LYS A 8 185.675 177.060 218.981 1.00 32.72 ATOM 70 C LYS A 8 186.964 177.446 219.694 1.00 35.97 ATOM 71 O LYS A 8 187.806 178.154 219.129 1.00 41.80 ATOM 72 CB LYS A 8 184.535 177.987 219.401 1.00 35.08 ATOM 73 CG LYS A 8 183.595 178.366 218.270 1.00 36.68 ATOM 74 CD LYS A 8 182.692 179.521 218.662 1.00 37.25 ATOM 75 CE LYS A 8 183.378 180.857 218.455 1.00 33.61 ATOM 76 NZ LYS A 8 183.390 181.252 217.022 1.00 40.78 ATOM 77 N ARG A 9 187.125 177.005 220.944 1.00 44.04 ATOM 78 CA ARG A 9 188.336 177.312 221.700 1.00 38.91 ATOM 79 C ARG A 9 189.577 176.702 221.058 1.00 39.52 ATOM 80 O ARG A 9 190.628 177.350 220.996 1.00 42.42 ATOM 81 CB ARG A 9 188.185 176.831 223.142 1.00 37.51 ATOM 82 CG ARG A 9 187.449 177.806 224.040 1.00 37.38 ATOM 83 CD ARG A 9 186.741 177.083 225.170 1.00 41.64 ATOM 84 NE ARG A 9 187.671 176.545 226.155 1.00 39.13 ATOM 85 CZ ARG A 9 187.810 177.016 227.386 1.00 40.71 ATOM 86 NH1 ARG A 9 187.087 178.035 227.822 1.00 39.64 ATOM 87 NH2 ARG A 9 188.693 176.448 228.202 1.00 45.73 ATOM 88 N THR A 10 189.488 175.452 220.592 1.00 37.06 ATOM 89 CA THR A 10 190.661 174.836 219.975 1.00 47.86 ATOM 90 C THR A 10 190.969 175.452 218.612 1.00 42.16 ATOM 91 O THR A 10 192.136 175.491 218.208 1.00 41.73 ATOM 92 CB THR A 10 190.502 173.310 219.890 1.00 45.67 ATOM 93 OG1 THR A 10 191.770 172.718 219.589 1.00 33.50 ATOM 94 CG2 THR A 10 189.506 172.886 218.831 1.00 39.29 ATOM 95 N ARG A 11 189.949 175.927 217.888 1.00 31.48 ATOM 96 CA ARG A 11 190.203 176.631 216.635 1.00 30.47 ATOM 97 C ARG A 11 190.870 177.976 216.889 1.00 30.43 ATOM 98 O ARG A 11 191.763 178.383 216.136 1.00 38.33 ATOM 99 CB ARG A 11 188.906 176.811 215.851 1.00 30.52 ATOM 100 CG ARG A 11 188.341 175.512 215.327 1.00 27.80 ATOM 101 CD ARG A 11 187.110 175.730 214.477 1.00 29.73 ATOM 102 NE ARG A 11 186.509 174.458 214.098 1.00 34.58 ATOM 103 CZ ARG A 11 186.888 173.742 213.049 1.00 34.36 ATOM 104 NH1 ARG A 11 187.855 174.152 212.251 1.00 39.84 ATOM 105 NH2 ARG A 11 186.282 172.588 212.796 1.00 33.02 ATOM 106 N ARG A 12 190.429 178.691 217.927 1.00 29.74 ATOM 107 CA ARG A 12 191.103 179.922 218.329 1.00 29.93 ATOM 108 C ARG A 12 192.546 179.647 218.728 1.00 33.08 ATOM 109 O ARG A 12 193.451 180.419 218.390 1.00 33.31 ATOM 110 CB ARG A 12 190.349 180.588 219.480 1.00 30.01 ATOM 111 CG ARG A 12 189.405 181.715 219.072 1.00 29.53 ATOM 112 CD ARG A 12 188.371 181.267 218.057 1.00 35.85 ATOM 113 NE ARG A 12 187.733 182.399 217.395 1.00 39.32 ATOM 114 CZ ARG A 12 187.071 182.319 216.249 1.00 37.03 ATOM 115 NH1 ARG A 12 186.922 181.167 215.617 1.00 34.58 ATOM 116 NH2 ARG A 12 186.543 183.422 215.726 1.00 33.08 ATOM 117 N LEU A 13 192.774 178.559 219.471 1.00 33.53 ATOM 118 CA LEU A 13 194.129 178.179 219.861 1.00 32.70 ATOM 119 C LEU A 13 194.991 177.869 218.646 1.00 37.12 ATOM 120 O LEU A 13 196.164 178.254 218.594 1.00 36.63 ATOM 121 CB LEU A 13 194.086 176.971 220.795 1.00 33.10 ATOM 122 CG LEU A 13 194.139 177.266 222.289 1.00 39.04 ATOM 123 CD1 LEU A 13 193.949 175.988 223.086 1.00 35.88 ATOM 124 CD2 LEU A 13 195.456 177.931 222.627 1.00 35.82 ATOM 125 N LYS A 14 194.431 177.149 217.671 1.00 37.38 ATOM 126 CA LYS A 14 195.185 176.799 216.472 1.00 37.75 ATOM 127 C LYS A 14 195.566 178.037 215.671 1.00 35.90 ATOM 128 O LYS A 14 196.694 178.133 215.174 1.00 44.68 ATOM 129 CB LYS A 14 194.382 175.826 215.613 1.00 29.00 ATOM 130 CG LYS A 14 194.505 174.382 216.049 1.00 31.52 ATOM 131 CD LYS A 14 194.425 173.453 214.856 1.00 34.70 ATOM 132 CE LYS A 14 195.674 173.571 214.001 1.00 33.63 ATOM 133 NZ LYS A 14 195.776 172.471 213.007 1.00 30.36 ATOM 134 N ARG A 15 194.629 178.975 215.502 1.00 27.09 ATOM 135 CA ARG A 15 194.938 180.223 214.810 1.00 26.32 ATOM 136 C ARG A 15 196.059 180.976 215.510 1.00 29.27 ATOM 137 O ARG A 15 197.038 181.385 214.876 1.00 40.17 ATOM 138 CB ARG A 15 193.698 181.111 214.728 1.00 32.05 ATOM 139 CG ARG A 15 192.702 180.756 213.649 1.00 33.18 ATOM 140 CD ARG A 15 191.810 181.953 213.381 1.00 26.05 ATOM 141 NE ARG A 15 190.407 181.587 213.241 1.00 32.49 ATOM 142 CZ ARG A 15 189.424 182.458 213.057 1.00 35.21 ATOM 143 NH1 ARG A 15 189.658 183.758 212.981 1.00 27.69 ATOM 144 NH2 ARG A 15 188.176 182.013 212.944 1.00 39.09 ATOM 145 N LYS A 16 195.927 181.169 216.824 1.00 27.48 ATOM 146 CA LYS A 16 196.914 181.940 217.572 1.00 32.86 ATOM 147 C LYS A 16 198.275 181.255 217.566 1.00 26.53 ATOM 148 O LYS A 16 199.311 181.923 217.481 1.00 30.94 ATOM 149 CB LYS A 16 196.423 182.165 219.002 1.00 31.31 ATOM 150 CG LYS A 16 197.282 183.111 219.821 1.00 32.99 ATOM 151 CD LYS A 16 196.594 183.505 221.120 1.00 33.01 ATOM 152 CE LYS A 16 196.657 182.385 222.147 1.00 29.31 ATOM 153 NZ LYS A 16 196.134 182.817 223.475 1.00 27.47 ATOM 154 N ARG A 17 198.293 179.922 217.649 1.00 22.41 ATOM 155 CA ARG A 17 199.561 179.197 217.642 1.00 35.30 ATOM 156 C ARG A 17 200.279 179.333 216.304 1.00 33.59 ATOM 157 O ARG A 17 201.506 179.473 216.266 1.00 36.54 ATOM 158 CB ARG A 17 199.334 177.726 217.984 1.00 32.09 ATOM 159 CG ARG A 17 200.622 176.953 218.223 1.00 23.51 ATOM 160 CD ARG A 17 200.346 175.504 218.560 1.00 35.89 ATOM 161 NE ARG A 17 199.136 175.357 219.359 1.00 35.84 ATOM 162 CZ ARG A 17 199.123 175.014 220.639 1.00 25.68 ATOM 163 NH1 ARG A 17 200.242 174.784 221.304 1.00 31.61 ATOM 164 NH2 ARG A 17 197.957 174.899 221.267 1.00 24.87 ATOM 165 N ARG A 18 199.541 179.251 215.196 1.00 28.89 ATOM 166 CA ARG A 18 200.153 179.466 213.887 1.00 32.18 ATOM 167 C ARG A 18 200.674 180.891 213.741 1.00 31.61 ATOM 168 O ARG A 18 201.721 181.113 213.123 1.00 39.98 ATOM 169 CB ARG A 18 199.157 179.146 212.777 1.00 38.23 ATOM 170 CG ARG A 18 198.735 177.691 212.705 1.00 34.34 ATOM 171 CD ARG A 18 197.955 177.388 211.428 1.00 30.94 ATOM 172 NE ARG A 18 196.807 178.268 211.237 1.00 36.17 ATOM 173 CZ ARG A 18 196.778 179.297 210.400 1.00 35.07 ATOM 174 NH1 ARG A 18 197.822 179.604 209.648 1.00 26.20 ATOM 175 NH2 ARG A 18 195.677 180.038 210.320 1.00 30.43 ATOM 176 N LYS A 19 199.930 181.875 214.249 1.00 31.27 ATOM 177 CA LYS A 19 200.384 183.261 214.163 1.00 31.64 ATOM 178 C LYS A 19 201.663 183.486 214.962 1.00 31.16 ATOM 179 O LYS A 19 202.577 184.175 214.497 1.00 32.89 ATOM 180 CB LYS A 19 199.281 184.212 214.625 1.00 28.77 ATOM 181 CG LYS A 19 198.048 184.208 213.738 1.00 32.47 ATOM 182 CD LYS A 19 198.420 184.268 212.264 1.00 29.15 ATOM 183 CE LYS A 19 197.244 184.720 211.414 1.00 34.03 ATOM 184 NZ LYS A 19 196.569 185.919 211.983 1.00 31.90 ATOM 185 N VAL A 20 201.744 182.935 216.176 1.00 37.70 ATOM 186 CA VAL A 20 202.936 183.176 216.985 1.00 34.19 ATOM 187 C VAL A 20 204.128 182.391 216.449 1.00 34.68 ATOM 188 O VAL A 20 205.279 182.786 216.661 1.00 36.25 ATOM 189 CB VAL A 20 202.671 182.877 218.474 1.00 35.40 ATOM 190 CG1 VAL A 20 201.523 183.731 218.990 1.00 38.44 ATOM 191 CG2 VAL A 20 202.388 181.403 218.701 1.00 32.11 ATOM 192 N ARG A 21 203.888 181.274 215.757 1.00 40.07 ATOM 193 CA ARG A 21 204.973 180.597 215.059 1.00 41.11 ATOM 194 C ARG A 21 205.380 181.311 213.776 1.00 36.96 ATOM 195 O ARG A 21 206.471 181.047 213.260 1.00 39.53 ATOM 196 CB ARG A 21 204.594 179.143 214.742 1.00 40.82 ATOM 197 CG ARG A 21 204.000 178.929 213.353 1.00 39.47 ATOM 198 CD ARG A 21 203.843 177.459 212.992 1.00 46.19 ATOM 199 NE ARG A 21 205.119 176.751 213.009 1.00 40.77 ATOM 200 CZ ARG A 21 205.247 175.434 213.094 1.00 39.43 ATOM 201 NH1 ARG A 21 204.191 174.639 213.159 1.00 46.91 ATOM 202 NH2 ARG A 21 206.464 174.900 213.104 1.00 37.95 ATOM 203 N ALA A 22 204.526 182.194 213.247 1.00 41.37 ATOM 204 CA ALA A 22 204.834 182.883 211.996 1.00 49.94 ATOM 205 C ALA A 22 206.060 183.781 212.126 1.00 46.63 ATOM 206 O ALA A 22 206.886 183.845 211.208 1.00 46.07 ATOM 207 CB ALA A 22 203.626 183.689 211.521 1.00 40.54 ATOM 208 N ARG A 23 206.190 184.497 213.250 1.00 48.95 ATOM 209 CA ARG A 23 207.328 185.399 213.405 1.00 48.95 ATOM 210 C ARG A 23 208.630 184.619 213.523 1.00 54.67 ATOM 211 O ARG A 23 209.676 185.065 213.036 1.00 48.50 ATOM 212 CB ARG A 23 207.153 186.303 214.626 1.00 49.82 ATOM 213 CG ARG A 23 205.782 186.922 214.806 1.00 49.09 ATOM 214 CD ARG A 23 205.453 186.993 216.286 1.00 51.37 ATOM 215 NE ARG A 23 206.250 188.014 216.941 1.00 57.12 ATOM 216 CZ ARG A 23 206.675 188.008 218.197 1.00 55.93 ATOM 217 NH1 ARG A 23 205.833 187.860 219.206 1.00 53.32 ATOM 218 NH2 ARG A 23 207.916 188.406 218.458 1.00 48.45 ATOM 219 N SER A 24 208.589 183.459 214.179 1.00 54.69 ATOM 220 CA SER A 24 209.758 182.591 214.220 1.00 53.69 ATOM 221 C SER A 24 210.056 181.992 212.853 1.00 55.37 ATOM 222 O SER A 24 211.212 181.672 212.555 1.00 52.37 ATOM 223 CB SER A 24 209.549 181.486 215.251 1.00 55.24 ATOM 224 OG SER A 24 209.709 181.981 216.569 1.00 49.32 ATOM 225 N LYS A 25 209.036 181.835 212.015 1.00 59.35 ATOM 226 CA LYS A 25 209.216 181.333 210.659 1.00 57.17 ATOM 227 C LYS A 25 209.476 182.481 209.690 1.00 53.80 ATOM 228 O LYS A 25 210.365 183.303 209.910 1.00 48.97 ATOM 229 CB LYS A 25 207.989 180.535 210.211 1.00 52.90 ATOM 230 CG LYS A 25 207.821 179.192 210.906 1.00 55.28 ATOM 231 CD LYS A 25 208.890 178.205 210.469 1.00 55.64 ATOM 232 CE LYS A 25 208.733 176.867 211.174 1.00 51.72 ATOM 233 NZ LYS A 25 209.052 176.956 212.625 1.00 52.84 TER