HEADER RIBOSOME/RNA 31-DEC-69 8EVT TITLE Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) TITLE 2 internal ribosome entry site (IRES) refined against a composite map COMPND MOL_ID: 76; COMPND 2 MOLECULE: 60S ribosomal protein L41-A; COMPND 3 CHAIN: An; EXPDTA ELECTRON MICROSCOPY DBREF 8EVT A 1 25 UNP P0CX86 RL41A_YEAST 1 25 SEQRES 1 An 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 An 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET A 1 185.043 171.595 232.383 1.00 14.95 ATOM 2 CA MET A 1 185.515 172.153 231.125 1.00 8.65 ATOM 3 C MET A 1 184.809 171.500 229.946 1.00 7.04 ATOM 4 O MET A 1 185.039 170.330 229.644 1.00 12.84 ATOM 5 CB MET A 1 187.027 171.983 230.997 1.00 12.41 ATOM 6 CG MET A 1 187.623 172.702 229.804 1.00 9.23 ATOM 7 SD MET A 1 187.621 174.487 230.020 1.00 11.19 ATOM 8 CE MET A 1 188.683 174.997 228.678 1.00 9.95 ATOM 9 N ARG A 2 183.938 172.264 229.293 1.00 3.36 ATOM 10 CA ARG A 2 183.216 171.760 228.134 1.00 4.48 ATOM 11 C ARG A 2 184.190 171.400 227.018 1.00 7.75 ATOM 12 O ARG A 2 185.217 172.058 226.831 1.00 16.66 ATOM 13 CB ARG A 2 182.206 172.806 227.660 1.00 12.61 ATOM 14 CG ARG A 2 181.211 172.320 226.626 1.00 8.23 ATOM 15 CD ARG A 2 180.255 173.434 226.242 1.00 3.88 ATOM 16 NE ARG A 2 179.539 173.154 225.005 1.00 5.31 ATOM 17 CZ ARG A 2 178.606 173.941 224.489 1.00 3.86 ATOM 18 NH1 ARG A 2 178.248 175.068 225.080 1.00 10.00 ATOM 19 NH2 ARG A 2 178.011 173.584 223.356 1.00 5.74 ATOM 20 N ALA A 3 183.859 170.342 226.277 1.00 10.34 ATOM 21 CA ALA A 3 184.800 169.784 225.310 1.00 5.56 ATOM 22 C ALA A 3 185.091 170.756 224.172 1.00 5.06 ATOM 23 O ALA A 3 186.230 170.840 223.702 1.00 10.09 ATOM 24 CB ALA A 3 184.269 168.460 224.766 1.00 8.74 ATOM 25 N LYS A 4 184.077 171.484 223.699 1.00 3.67 ATOM 26 CA LYS A 4 184.310 172.411 222.596 1.00 9.87 ATOM 27 C LYS A 4 185.079 173.645 223.051 1.00 6.07 ATOM 28 O LYS A 4 185.757 174.281 222.237 1.00 5.72 ATOM 29 CB LYS A 4 182.985 172.815 221.944 1.00 4.55 ATOM 30 CG LYS A 4 182.341 174.057 222.535 1.00 9.42 ATOM 31 CD LYS A 4 180.937 174.285 222.004 1.00 3.72 ATOM 32 CE LYS A 4 180.922 174.503 220.505 1.00 7.18 ATOM 33 NZ LYS A 4 179.576 174.900 220.014 1.00 0.85 ATOM 34 N TRP A 5 184.969 174.017 224.328 1.00 7.52 ATOM 35 CA TRP A 5 185.752 175.140 224.829 1.00 8.85 ATOM 36 C TRP A 5 187.200 174.740 225.080 1.00 3.84 ATOM 37 O TRP A 5 188.115 175.538 224.847 1.00 10.87 ATOM 38 CB TRP A 5 185.113 175.710 226.095 1.00 3.97 ATOM 39 CG TRP A 5 183.686 176.195 225.919 1.00 10.55 ATOM 40 CD1 TRP A 5 182.686 176.123 226.841 1.00 0.63 ATOM 41 CD2 TRP A 5 183.113 176.832 224.761 1.00 10.14 ATOM 42 NE1 TRP A 5 181.532 176.666 226.336 1.00 7.70 ATOM 43 CE2 TRP A 5 181.766 177.105 225.061 1.00 0.90 ATOM 44 CE3 TRP A 5 183.607 177.192 223.501 1.00 0.00 ATOM 45 CZ2 TRP A 5 180.909 177.721 224.152 1.00 2.84 ATOM 46 CZ3 TRP A 5 182.755 177.799 222.602 1.00 1.70 ATOM 47 CH2 TRP A 5 181.421 178.055 222.930 1.00 4.60 ATOM 48 N ARG A 6 187.425 173.513 225.557 1.00 6.65 ATOM 49 CA ARG A 6 188.785 172.995 225.640 1.00 8.76 ATOM 50 C ARG A 6 189.414 172.909 224.258 1.00 8.17 ATOM 51 O ARG A 6 190.617 173.141 224.095 1.00 10.05 ATOM 52 CB ARG A 6 188.790 171.624 226.315 1.00 8.21 ATOM 53 CG ARG A 6 190.183 171.074 226.570 1.00 11.19 ATOM 54 CD ARG A 6 190.139 169.721 227.256 1.00 16.47 ATOM 55 NE ARG A 6 189.563 169.808 228.593 1.00 14.18 ATOM 56 CZ ARG A 6 190.247 170.134 229.680 1.00 19.15 ATOM 57 NH1 ARG A 6 191.529 170.462 229.618 1.00 14.23 ATOM 58 NH2 ARG A 6 189.631 170.142 230.858 1.00 17.89 ATOM 59 N LYS A 7 188.613 172.554 223.252 1.00 10.32 ATOM 60 CA LYS A 7 189.088 172.585 221.874 1.00 6.20 ATOM 61 C LYS A 7 189.426 174.006 221.442 1.00 9.63 ATOM 62 O LYS A 7 190.434 174.234 220.765 1.00 13.16 ATOM 63 CB LYS A 7 188.031 171.979 220.953 1.00 4.71 ATOM 64 CG LYS A 7 188.499 171.715 219.536 1.00 12.97 ATOM 65 CD LYS A 7 187.339 171.241 218.677 1.00 11.43 ATOM 66 CE LYS A 7 187.778 170.914 217.266 1.00 9.33 ATOM 67 NZ LYS A 7 186.617 170.654 216.372 1.00 13.69 ATOM 68 N LYS A 8 188.583 174.974 221.813 1.00 4.39 ATOM 69 CA LYS A 8 188.852 176.364 221.463 1.00 6.88 ATOM 70 C LYS A 8 190.104 176.878 222.158 1.00 11.99 ATOM 71 O LYS A 8 190.928 177.559 221.539 1.00 12.66 ATOM 72 CB LYS A 8 187.655 177.241 221.817 1.00 6.88 ATOM 73 CG LYS A 8 187.754 178.644 221.258 1.00 4.08 ATOM 74 CD LYS A 8 186.946 179.613 222.089 1.00 10.59 ATOM 75 CE LYS A 8 185.548 179.762 221.536 1.00 9.91 ATOM 76 NZ LYS A 8 185.526 180.608 220.314 1.00 11.09 ATOM 77 N ARG A 9 190.259 176.566 223.446 1.00 12.67 ATOM 78 CA ARG A 9 191.450 176.992 224.169 1.00 15.12 ATOM 79 C ARG A 9 192.700 176.345 223.594 1.00 7.77 ATOM 80 O ARG A 9 193.734 177.003 223.445 1.00 19.15 ATOM 81 CB ARG A 9 191.305 176.661 225.653 1.00 13.21 ATOM 82 CG ARG A 9 192.491 177.073 226.504 1.00 14.89 ATOM 83 CD ARG A 9 192.556 176.241 227.767 1.00 12.17 ATOM 84 NE ARG A 9 191.716 176.805 228.814 1.00 13.63 ATOM 85 CZ ARG A 9 191.612 176.315 230.041 1.00 11.29 ATOM 86 NH1 ARG A 9 192.290 175.244 230.417 1.00 16.51 ATOM 87 NH2 ARG A 9 190.804 176.913 230.911 1.00 13.96 ATOM 88 N THR A 10 192.606 175.071 223.209 1.00 10.64 ATOM 89 CA THR A 10 193.749 174.391 222.608 1.00 17.27 ATOM 90 C THR A 10 194.072 174.963 221.234 1.00 12.35 ATOM 91 O THR A 10 195.238 174.969 220.823 1.00 18.13 ATOM 92 CB THR A 10 193.476 172.890 222.519 1.00 14.36 ATOM 93 OG1 THR A 10 193.188 172.379 223.826 1.00 16.95 ATOM 94 CG2 THR A 10 194.684 172.162 221.971 1.00 13.13 ATOM 95 N ARG A 11 193.063 175.449 220.513 1.00 16.29 ATOM 96 CA ARG A 11 193.331 176.118 219.248 1.00 17.97 ATOM 97 C ARG A 11 194.006 177.464 219.469 1.00 17.29 ATOM 98 O ARG A 11 194.751 177.931 218.602 1.00 22.27 ATOM 99 CB ARG A 11 192.036 176.290 218.456 1.00 18.49 ATOM 100 CG ARG A 11 191.538 175.004 217.825 1.00 21.47 ATOM 101 CD ARG A 11 190.295 175.228 216.993 1.00 19.60 ATOM 102 NE ARG A 11 189.923 174.025 216.260 1.00 22.19 ATOM 103 CZ ARG A 11 188.903 173.947 215.418 1.00 21.06 ATOM 104 NH1 ARG A 11 188.131 174.992 215.171 1.00 23.95 ATOM 105 NH2 ARG A 11 188.662 172.797 214.797 1.00 23.91 ATOM 106 N ARG A 12 193.732 178.118 220.600 1.00 17.89 ATOM 107 CA ARG A 12 194.397 179.379 220.909 1.00 19.40 ATOM 108 C ARG A 12 195.863 179.160 221.274 1.00 21.57 ATOM 109 O ARG A 12 196.740 179.898 220.812 1.00 23.97 ATOM 110 CB ARG A 12 193.650 180.107 222.027 1.00 19.85 ATOM 111 CG ARG A 12 192.231 180.464 221.635 1.00 21.59 ATOM 112 CD ARG A 12 192.211 181.530 220.555 1.00 24.29 ATOM 113 NE ARG A 12 190.858 181.947 220.205 1.00 23.16 ATOM 114 CZ ARG A 12 190.572 182.812 219.242 1.00 25.28 ATOM 115 NH1 ARG A 12 191.524 183.403 218.538 1.00 23.75 ATOM 116 NH2 ARG A 12 189.298 183.098 218.984 1.00 27.11 ATOM 117 N LEU A 13 196.148 178.164 222.119 1.00 26.02 ATOM 118 CA LEU A 13 197.541 177.832 222.411 1.00 26.22 ATOM 119 C LEU A 13 198.286 177.397 221.155 1.00 29.33 ATOM 120 O LEU A 13 199.433 177.801 220.936 1.00 32.00 ATOM 121 CB LEU A 13 197.629 176.745 223.485 1.00 27.11 ATOM 122 CG LEU A 13 197.417 177.047 224.973 1.00 25.70 ATOM 123 CD1 LEU A 13 195.985 177.355 225.347 1.00 28.70 ATOM 124 CD2 LEU A 13 197.914 175.853 225.768 1.00 26.81 ATOM 125 N LYS A 14 197.653 176.568 220.320 1.00 26.25 ATOM 126 CA LYS A 14 198.293 176.148 219.079 1.00 26.26 ATOM 127 C LYS A 14 198.504 177.327 218.140 1.00 28.22 ATOM 128 O LYS A 14 199.531 177.412 217.457 1.00 30.33 ATOM 129 CB LYS A 14 197.466 175.062 218.391 1.00 25.78 ATOM 130 CG LYS A 14 197.568 173.695 219.037 1.00 27.70 ATOM 131 CD LYS A 14 196.583 172.728 218.417 1.00 27.30 ATOM 132 CE LYS A 14 196.970 172.404 216.987 1.00 28.18 ATOM 133 NZ LYS A 14 196.085 171.371 216.390 1.00 31.78 ATOM 134 N ARG A 15 197.533 178.239 218.077 1.00 28.03 ATOM 135 CA ARG A 15 197.664 179.394 217.197 1.00 24.90 ATOM 136 C ARG A 15 198.782 180.326 217.643 1.00 26.17 ATOM 137 O ARG A 15 199.414 180.975 216.804 1.00 29.04 ATOM 138 CB ARG A 15 196.339 180.149 217.129 1.00 27.73 ATOM 139 CG ARG A 15 196.262 181.185 216.036 1.00 26.78 ATOM 140 CD ARG A 15 195.356 182.323 216.449 1.00 27.75 ATOM 141 NE ARG A 15 193.973 182.054 216.080 1.00 28.39 ATOM 142 CZ ARG A 15 193.366 182.564 215.018 1.00 29.73 ATOM 143 NH1 ARG A 15 193.994 183.379 214.188 1.00 29.22 ATOM 144 NH2 ARG A 15 192.096 182.245 214.781 1.00 31.65 ATOM 145 N LYS A 16 199.042 180.409 218.946 1.00 28.35 ATOM 146 CA LYS A 16 200.130 181.243 219.438 1.00 27.79 ATOM 147 C LYS A 16 201.451 180.492 219.512 1.00 26.33 ATOM 148 O LYS A 16 202.513 181.122 219.463 1.00 30.14 ATOM 149 CB LYS A 16 199.768 181.838 220.803 1.00 31.74 ATOM 150 CG LYS A 16 199.664 180.846 221.942 1.00 28.69 ATOM 151 CD LYS A 16 199.279 181.555 223.231 1.00 31.79 ATOM 152 CE LYS A 16 199.125 180.580 224.387 1.00 32.20 ATOM 153 NZ LYS A 16 200.420 179.954 224.764 1.00 32.42 ATOM 154 N ARG A 17 201.413 179.164 219.647 1.00 28.48 ATOM 155 CA ARG A 17 202.645 178.387 219.555 1.00 27.02 ATOM 156 C ARG A 17 203.226 178.453 218.151 1.00 32.11 ATOM 157 O ARG A 17 204.450 178.469 217.980 1.00 33.62 ATOM 158 CB ARG A 17 202.401 176.934 219.957 1.00 30.48 ATOM 159 CG ARG A 17 202.578 176.662 221.436 1.00 31.91 ATOM 160 CD ARG A 17 202.436 175.184 221.740 1.00 28.86 ATOM 161 NE ARG A 17 201.592 174.956 222.904 1.00 30.47 ATOM 162 CZ ARG A 17 201.118 173.772 223.266 1.00 32.61 ATOM 163 NH1 ARG A 17 201.400 172.677 222.581 1.00 33.38 ATOM 164 NH2 ARG A 17 200.340 173.686 224.341 1.00 30.72 ATOM 165 N ARG A 18 202.367 178.457 217.131 1.00 35.19 ATOM 166 CA ARG A 18 202.839 178.570 215.758 1.00 33.24 ATOM 167 C ARG A 18 203.248 179.992 215.392 1.00 35.33 ATOM 168 O ARG A 18 203.795 180.199 214.304 1.00 38.35 ATOM 169 CB ARG A 18 201.777 178.040 214.785 1.00 36.81 ATOM 170 CG ARG A 18 200.575 178.938 214.526 1.00 35.06 ATOM 171 CD ARG A 18 199.861 178.483 213.251 1.00 35.82 ATOM 172 NE ARG A 18 198.496 178.984 213.139 1.00 34.86 ATOM 173 CZ ARG A 18 197.420 178.310 213.521 1.00 36.69 ATOM 174 NH1 ARG A 18 197.515 177.123 214.097 1.00 36.43 ATOM 175 NH2 ARG A 18 196.216 178.844 213.326 1.00 37.02 ATOM 176 N LYS A 19 202.991 180.970 216.262 1.00 34.90 ATOM 177 CA LYS A 19 203.483 182.328 216.061 1.00 34.81 ATOM 178 C LYS A 19 204.811 182.566 216.769 1.00 33.98 ATOM 179 O LYS A 19 205.693 183.230 216.217 1.00 36.38 ATOM 180 CB LYS A 19 202.449 183.352 216.538 1.00 34.90 ATOM 181 CG LYS A 19 201.093 183.237 215.861 1.00 37.44 ATOM 182 CD LYS A 19 200.209 184.429 216.192 1.00 36.59 ATOM 183 CE LYS A 19 199.327 184.807 215.010 1.00 36.79 ATOM 184 NZ LYS A 19 197.922 184.345 215.179 1.00 36.36 ATOM 185 N VAL A 20 204.968 182.051 217.992 1.00 34.80 ATOM 186 CA VAL A 20 206.254 182.172 218.670 1.00 32.16 ATOM 187 C VAL A 20 207.317 181.351 217.950 1.00 33.25 ATOM 188 O VAL A 20 208.487 181.749 217.901 1.00 35.17 ATOM 189 CB VAL A 20 206.128 181.775 220.155 1.00 34.09 ATOM 190 CG1 VAL A 20 205.772 180.305 220.304 1.00 33.47 ATOM 191 CG2 VAL A 20 207.413 182.095 220.910 1.00 34.13 ATOM 192 N ARG A 21 206.944 180.196 217.390 1.00 36.66 ATOM 193 CA ARG A 21 207.903 179.412 216.619 1.00 35.11 ATOM 194 C ARG A 21 208.331 180.149 215.358 1.00 36.24 ATOM 195 O ARG A 21 209.521 180.190 215.031 1.00 37.65 ATOM 196 CB ARG A 21 207.318 178.046 216.262 1.00 34.75 ATOM 197 CG ARG A 21 208.315 176.910 216.393 1.00 33.29 ATOM 198 CD ARG A 21 207.739 175.593 215.916 1.00 33.24 ATOM 199 NE ARG A 21 208.791 174.700 215.447 1.00 34.15 ATOM 200 CZ ARG A 21 208.590 173.646 214.670 1.00 35.11 ATOM 201 NH1 ARG A 21 207.379 173.314 214.256 1.00 37.22 ATOM 202 NH2 ARG A 21 209.631 172.907 214.298 1.00 37.29 ATOM 203 N ALA A 22 207.371 180.728 214.633 1.00 38.76 ATOM 204 CA ALA A 22 207.707 181.498 213.441 1.00 36.38 ATOM 205 C ALA A 22 208.552 182.714 213.794 1.00 38.94 ATOM 206 O ALA A 22 209.437 183.111 213.027 1.00 39.99 ATOM 207 CB ALA A 22 206.432 181.919 212.712 1.00 39.56 ATOM 208 N ARG A 23 208.287 183.322 214.951 1.00 38.21 ATOM 209 CA ARG A 23 209.093 184.449 215.405 1.00 39.96 ATOM 210 C ARG A 23 210.517 184.011 215.719 1.00 40.82 ATOM 211 O ARG A 23 211.486 184.615 215.244 1.00 38.98 ATOM 212 CB ARG A 23 208.444 185.090 216.629 1.00 39.02 ATOM 213 CG ARG A 23 209.365 186.010 217.387 1.00 38.26 ATOM 214 CD ARG A 23 208.956 186.140 218.837 1.00 39.14 ATOM 215 NE ARG A 23 209.880 186.994 219.572 1.00 40.69 ATOM 216 CZ ARG A 23 209.945 188.313 219.449 1.00 40.04 ATOM 217 NH1 ARG A 23 209.143 188.972 218.629 1.00 40.05 ATOM 218 NH2 ARG A 23 210.839 188.987 220.166 1.00 40.53 ATOM 219 N SER A 24 210.662 182.956 216.521 1.00 45.27 ATOM 220 CA SER A 24 211.968 182.416 216.882 1.00 43.06 ATOM 221 C SER A 24 212.685 181.780 215.700 1.00 43.24 ATOM 222 O SER A 24 213.813 181.305 215.863 1.00 43.94 ATOM 223 CB SER A 24 211.815 181.391 218.008 1.00 44.60 ATOM 224 OG SER A 24 211.046 181.912 219.080 1.00 42.71 ATOM 225 N LYS A 25 212.055 181.755 214.530 1.00 43.16 ATOM 226 CA LYS A 25 212.583 181.074 213.359 1.00 43.63 ATOM 227 C LYS A 25 213.380 182.026 212.474 1.00 45.68 ATOM 228 O LYS A 25 214.460 181.685 211.992 1.00 46.07 ATOM 229 CB LYS A 25 211.430 180.455 212.570 1.00 44.24 ATOM 230 CG LYS A 25 211.829 179.511 211.465 1.00 45.09 ATOM 231 CD LYS A 25 210.593 178.846 210.890 1.00 45.55 ATOM 232 CE LYS A 25 210.944 177.922 209.748 1.00 44.75 ATOM 233 NZ LYS A 25 211.768 176.775 210.221 1.00 45.53 TER