HEADER RIBOSOME 31-DEC-69 8EWB TITLE Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) TITLE 2 internal ribosome entry site (IRES), eEF2 and GDP, Structure III COMPND MOL_ID: 76; COMPND 2 MOLECULE: 60S ribosomal protein L41-A; COMPND 3 CHAIN: An; EXPDTA ELECTRON MICROSCOPY DBREF 8EWB A 1 25 UNP P0CX86 RL41A_YEAST 1 25 SEQRES 1 An 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 An 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET A 1 184.210 171.070 232.131 1.00 29.72 ATOM 2 CA MET A 1 185.065 171.216 230.961 1.00 22.40 ATOM 3 C MET A 1 184.696 170.296 229.813 1.00 30.30 ATOM 4 O MET A 1 185.050 169.119 229.813 1.00 31.00 ATOM 5 CB MET A 1 186.517 170.958 231.349 1.00 18.32 ATOM 6 CG MET A 1 187.499 171.190 230.230 1.00 30.11 ATOM 7 SD MET A 1 187.652 172.854 229.573 1.00 40.82 ATOM 8 CE MET A 1 188.508 173.646 230.916 1.00 15.61 ATOM 9 N ARG A 2 183.986 170.836 228.827 1.00 32.03 ATOM 10 CA ARG A 2 183.831 170.121 227.569 1.00 26.56 ATOM 11 C ARG A 2 185.139 169.926 226.828 1.00 27.87 ATOM 12 O ARG A 2 186.066 170.734 226.914 1.00 25.28 ATOM 13 CB ARG A 2 182.875 170.788 226.594 1.00 17.56 ATOM 14 CG ARG A 2 181.631 171.466 227.001 1.00 11.62 ATOM 15 CD ARG A 2 181.071 171.999 225.646 1.00 25.28 ATOM 16 NE ARG A 2 179.668 172.358 225.719 1.00 21.93 ATOM 17 CZ ARG A 2 178.750 172.384 224.752 1.00 20.24 ATOM 18 NH1 ARG A 2 179.043 172.163 223.479 1.00 25.12 ATOM 19 NH2 ARG A 2 177.493 172.677 225.069 1.00 26.47 ATOM 20 N ALA A 3 185.179 168.838 226.062 1.00 24.84 ATOM 21 CA ALA A 3 186.277 168.613 225.143 1.00 26.04 ATOM 22 C ALA A 3 186.278 169.637 224.018 1.00 28.41 ATOM 23 O ALA A 3 187.304 169.795 223.352 1.00 30.97 ATOM 24 CB ALA A 3 186.209 167.199 224.568 1.00 30.81 ATOM 25 N LYS A 4 185.158 170.337 223.788 1.00 22.09 ATOM 26 CA LYS A 4 185.181 171.424 222.815 1.00 18.69 ATOM 27 C LYS A 4 185.815 172.677 223.397 1.00 17.17 ATOM 28 O LYS A 4 186.410 173.463 222.654 1.00 26.16 ATOM 29 CB LYS A 4 183.780 171.748 222.301 1.00 21.54 ATOM 30 CG LYS A 4 183.123 172.934 222.959 1.00 22.00 ATOM 31 CD LYS A 4 181.727 173.163 222.433 1.00 18.39 ATOM 32 CE LYS A 4 181.713 173.850 221.090 1.00 26.71 ATOM 33 NZ LYS A 4 180.327 174.223 220.698 1.00 19.24 ATOM 34 N TRP A 5 185.697 172.893 224.709 1.00 18.47 ATOM 35 CA TRP A 5 186.486 173.959 225.305 1.00 18.45 ATOM 36 C TRP A 5 187.929 173.516 225.464 1.00 19.32 ATOM 37 O TRP A 5 188.837 174.348 225.397 1.00 29.17 ATOM 38 CB TRP A 5 185.899 174.413 226.644 1.00 22.13 ATOM 39 CG TRP A 5 184.456 174.875 226.610 1.00 13.87 ATOM 40 CD1 TRP A 5 183.522 174.677 227.580 1.00 23.48 ATOM 41 CD2 TRP A 5 183.804 175.636 225.579 1.00 14.33 ATOM 42 NE1 TRP A 5 182.330 175.250 227.218 1.00 28.18 ATOM 43 CE2 TRP A 5 182.476 175.845 225.994 1.00 17.81 ATOM 44 CE3 TRP A 5 184.209 176.152 224.346 1.00 13.42 ATOM 45 CZ2 TRP A 5 181.555 176.540 225.223 1.00 15.70 ATOM 46 CZ3 TRP A 5 183.294 176.841 223.585 1.00 19.85 ATOM 47 CH2 TRP A 5 181.982 177.026 224.023 1.00 21.94 ATOM 48 N ARG A 6 188.158 172.219 225.680 1.00 22.74 ATOM 49 CA ARG A 6 189.502 171.683 225.513 1.00 23.35 ATOM 50 C ARG A 6 189.968 171.857 224.076 1.00 21.77 ATOM 51 O ARG A 6 191.108 172.259 223.828 1.00 17.03 ATOM 52 CB ARG A 6 189.543 170.208 225.901 1.00 22.90 ATOM 53 CG ARG A 6 189.196 169.935 227.338 1.00 28.79 ATOM 54 CD ARG A 6 190.253 170.524 228.252 1.00 34.74 ATOM 55 NE ARG A 6 191.557 169.899 228.074 1.00 31.19 ATOM 56 CZ ARG A 6 192.697 170.424 228.500 1.00 29.26 ATOM 57 NH1 ARG A 6 192.728 171.588 229.126 1.00 28.31 ATOM 58 NH2 ARG A 6 193.833 169.766 228.291 1.00 31.52 ATOM 59 N LYS A 7 189.089 171.563 223.116 1.00 20.92 ATOM 60 CA LYS A 7 189.439 171.710 221.708 1.00 13.97 ATOM 61 C LYS A 7 189.740 173.163 221.372 1.00 15.53 ATOM 62 O LYS A 7 190.716 173.458 220.673 1.00 25.25 ATOM 63 CB LYS A 7 188.297 171.180 220.842 1.00 10.70 ATOM 64 CG LYS A 7 188.623 170.926 219.389 1.00 19.35 ATOM 65 CD LYS A 7 187.439 170.245 218.725 1.00 14.15 ATOM 66 CE LYS A 7 187.692 169.933 217.268 1.00 26.79 ATOM 67 NZ LYS A 7 186.574 169.147 216.680 1.00 22.17 ATOM 68 N LYS A 8 188.912 174.086 221.865 1.00 21.81 ATOM 69 CA LYS A 8 189.109 175.499 221.568 1.00 19.48 ATOM 70 C LYS A 8 190.319 176.057 222.308 1.00 20.03 ATOM 71 O LYS A 8 191.060 176.881 221.763 1.00 12.62 ATOM 72 CB LYS A 8 187.847 176.283 221.921 1.00 10.72 ATOM 73 CG LYS A 8 187.867 177.734 221.496 1.00 17.43 ATOM 74 CD LYS A 8 186.528 178.390 221.760 1.00 18.14 ATOM 75 CE LYS A 8 186.593 179.883 221.540 1.00 19.38 ATOM 76 NZ LYS A 8 186.561 180.231 220.097 1.00 19.50 ATOM 77 N ARG A 9 190.526 175.632 223.557 1.00 21.25 ATOM 78 CA ARG A 9 191.711 176.059 224.293 1.00 13.96 ATOM 79 C ARG A 9 192.983 175.524 223.651 1.00 28.82 ATOM 80 O ARG A 9 193.973 176.252 223.521 1.00 35.38 ATOM 81 CB ARG A 9 191.624 175.607 225.749 1.00 22.76 ATOM 82 CG ARG A 9 192.940 175.692 226.502 1.00 26.61 ATOM 83 CD ARG A 9 192.862 174.993 227.847 1.00 26.11 ATOM 84 NE ARG A 9 191.987 175.702 228.772 1.00 23.67 ATOM 85 CZ ARG A 9 192.002 175.540 230.087 1.00 30.58 ATOM 86 NH1 ARG A 9 192.845 174.705 230.671 1.00 25.39 ATOM 87 NH2 ARG A 9 191.150 176.235 230.835 1.00 27.17 ATOM 88 N THR A 10 192.977 174.252 223.245 1.00 23.20 ATOM 89 CA THR A 10 194.163 173.672 222.627 1.00 17.96 ATOM 90 C THR A 10 194.429 174.266 221.256 1.00 9.40 ATOM 91 O THR A 10 195.590 174.383 220.853 1.00 16.73 ATOM 92 CB THR A 10 194.030 172.156 222.519 1.00 26.97 ATOM 93 OG1 THR A 10 192.753 171.826 221.963 1.00 31.59 ATOM 94 CG2 THR A 10 194.178 171.510 223.886 1.00 31.46 ATOM 95 N ARG A 11 193.380 174.634 220.520 1.00 14.87 ATOM 96 CA ARG A 11 193.596 175.272 219.228 1.00 20.52 ATOM 97 C ARG A 11 194.323 176.597 219.389 1.00 27.61 ATOM 98 O ARG A 11 195.254 176.896 218.634 1.00 23.96 ATOM 99 CB ARG A 11 192.265 175.471 218.507 1.00 28.10 ATOM 100 CG ARG A 11 191.890 174.325 217.598 1.00 25.80 ATOM 101 CD ARG A 11 190.509 174.522 217.017 1.00 19.46 ATOM 102 NE ARG A 11 189.974 173.284 216.467 1.00 27.16 ATOM 103 CZ ARG A 11 189.136 173.226 215.442 1.00 32.38 ATOM 104 NH1 ARG A 11 188.715 174.321 214.831 1.00 28.88 ATOM 105 NH2 ARG A 11 188.710 172.041 215.020 1.00 26.91 ATOM 106 N ARG A 12 193.918 177.405 220.371 1.00 32.40 ATOM 107 CA ARG A 12 194.640 178.643 220.638 1.00 30.67 ATOM 108 C ARG A 12 196.068 178.360 221.070 1.00 25.70 ATOM 109 O ARG A 12 197.005 179.038 220.634 1.00 37.89 ATOM 110 CB ARG A 12 193.929 179.462 221.709 1.00 30.56 ATOM 111 CG ARG A 12 192.584 180.006 221.317 1.00 23.49 ATOM 112 CD ARG A 12 192.001 180.742 222.491 1.00 29.26 ATOM 113 NE ARG A 12 192.832 181.896 222.809 1.00 36.95 ATOM 114 CZ ARG A 12 192.699 183.096 222.259 1.00 39.03 ATOM 115 NH1 ARG A 12 191.764 183.344 221.357 1.00 40.49 ATOM 116 NH2 ARG A 12 193.529 184.069 222.620 1.00 37.50 ATOM 117 N LEU A 13 196.251 177.364 221.934 1.00 24.74 ATOM 118 CA LEU A 13 197.588 177.016 222.392 1.00 34.40 ATOM 119 C LEU A 13 198.430 176.465 221.251 1.00 25.01 ATOM 120 O LEU A 13 199.621 176.776 221.146 1.00 32.81 ATOM 121 CB LEU A 13 197.485 176.017 223.540 1.00 36.04 ATOM 122 CG LEU A 13 198.779 175.578 224.207 1.00 35.70 ATOM 123 CD1 LEU A 13 199.474 176.757 224.852 1.00 36.78 ATOM 124 CD2 LEU A 13 198.486 174.506 225.236 1.00 38.12 ATOM 125 N LYS A 14 197.827 175.653 220.380 1.00 27.90 ATOM 126 CA LYS A 14 198.512 175.122 219.207 1.00 32.81 ATOM 127 C LYS A 14 198.844 176.195 218.185 1.00 33.18 ATOM 128 O LYS A 14 199.632 175.939 217.270 1.00 27.67 ATOM 129 CB LYS A 14 197.648 174.061 218.525 1.00 28.62 ATOM 130 CG LYS A 14 198.415 173.071 217.675 1.00 29.72 ATOM 131 CD LYS A 14 197.483 172.310 216.754 1.00 29.51 ATOM 132 CE LYS A 14 196.369 171.656 217.537 1.00 37.04 ATOM 133 NZ LYS A 14 196.911 170.879 218.675 1.00 36.50 ATOM 134 N ARG A 15 198.259 177.378 218.311 1.00 33.44 ATOM 135 CA ARG A 15 198.443 178.440 217.341 1.00 29.20 ATOM 136 C ARG A 15 199.149 179.666 217.892 1.00 27.68 ATOM 137 O ARG A 15 199.633 180.482 217.101 1.00 34.24 ATOM 138 CB ARG A 15 197.079 178.775 216.725 1.00 31.22 ATOM 139 CG ARG A 15 196.785 180.091 216.074 1.00 27.87 ATOM 140 CD ARG A 15 195.407 179.797 215.561 1.00 36.51 ATOM 141 NE ARG A 15 194.478 179.571 216.658 1.00 35.17 ATOM 142 CZ ARG A 15 193.207 179.941 216.678 1.00 39.41 ATOM 143 NH1 ARG A 15 192.514 180.077 215.560 1.00 44.55 ATOM 144 NH2 ARG A 15 192.579 180.037 217.846 1.00 36.62 ATOM 145 N LYS A 16 199.252 179.810 219.212 1.00 35.45 ATOM 146 CA LYS A 16 200.272 180.698 219.747 1.00 38.34 ATOM 147 C LYS A 16 201.663 180.097 219.600 1.00 39.66 ATOM 148 O LYS A 16 202.651 180.835 219.660 1.00 29.90 ATOM 149 CB LYS A 16 200.010 181.022 221.217 1.00 27.30 ATOM 150 CG LYS A 16 200.156 179.841 222.152 1.00 38.23 ATOM 151 CD LYS A 16 199.784 180.235 223.569 1.00 39.96 ATOM 152 CE LYS A 16 200.840 181.145 224.176 1.00 39.07 ATOM 153 NZ LYS A 16 200.551 181.468 225.598 1.00 38.22 ATOM 154 N ARG A 17 201.764 178.779 219.408 1.00 39.16 ATOM 155 CA ARG A 17 203.066 178.132 219.319 1.00 33.14 ATOM 156 C ARG A 17 203.622 178.092 217.904 1.00 36.56 ATOM 157 O ARG A 17 204.845 178.137 217.734 1.00 39.57 ATOM 158 CB ARG A 17 203.019 176.706 219.873 1.00 29.77 ATOM 159 CG ARG A 17 202.192 175.729 219.074 1.00 31.49 ATOM 160 CD ARG A 17 202.144 174.379 219.768 1.00 33.12 ATOM 161 NE ARG A 17 201.400 174.389 221.020 1.00 35.48 ATOM 162 CZ ARG A 17 201.357 173.364 221.858 1.00 40.70 ATOM 163 NH1 ARG A 17 201.979 172.231 221.593 1.00 43.72 ATOM 164 NH2 ARG A 17 200.674 173.474 222.990 1.00 33.36 ATOM 165 N ARG A 18 202.776 178.006 216.880 1.00 37.54 ATOM 166 CA ARG A 18 203.305 178.136 215.530 1.00 37.80 ATOM 167 C ARG A 18 203.594 179.585 215.170 1.00 43.01 ATOM 168 O ARG A 18 204.178 179.842 214.112 1.00 46.14 ATOM 169 CB ARG A 18 202.354 177.516 214.504 1.00 31.88 ATOM 170 CG ARG A 18 200.939 178.042 214.521 1.00 37.50 ATOM 171 CD ARG A 18 200.074 177.238 213.561 1.00 39.48 ATOM 172 NE ARG A 18 198.650 177.428 213.802 1.00 43.40 ATOM 173 CZ ARG A 18 197.694 176.711 213.230 1.00 42.12 ATOM 174 NH1 ARG A 18 197.975 175.739 212.379 1.00 43.68 ATOM 175 NH2 ARG A 18 196.424 176.972 213.522 1.00 42.14 ATOM 176 N LYS A 19 203.201 180.527 216.025 1.00 46.61 ATOM 177 CA LYS A 19 203.651 181.907 215.927 1.00 42.59 ATOM 178 C LYS A 19 204.966 182.135 216.656 1.00 43.25 ATOM 179 O LYS A 19 205.788 182.936 216.198 1.00 49.26 ATOM 180 CB LYS A 19 202.581 182.847 216.487 1.00 44.41 ATOM 181 CG LYS A 19 202.969 184.313 216.489 1.00 44.41 ATOM 182 CD LYS A 19 201.995 185.137 217.314 1.00 47.11 ATOM 183 CE LYS A 19 202.129 184.825 218.791 1.00 48.34 ATOM 184 NZ LYS A 19 201.142 185.568 219.615 1.00 46.15 ATOM 185 N VAL A 20 205.189 181.443 217.775 1.00 44.14 ATOM 186 CA VAL A 20 206.449 181.601 218.494 1.00 43.18 ATOM 187 C VAL A 20 207.538 180.740 217.868 1.00 43.05 ATOM 188 O VAL A 20 208.723 181.085 217.938 1.00 40.18 ATOM 189 CB VAL A 20 206.265 181.291 219.991 1.00 36.05 ATOM 190 CG1 VAL A 20 206.121 179.805 220.226 1.00 39.97 ATOM 191 CG2 VAL A 20 207.421 181.849 220.796 1.00 38.37 ATOM 192 N ARG A 21 207.170 179.620 217.244 1.00 44.23 ATOM 193 CA ARG A 21 208.140 178.870 216.460 1.00 44.04 ATOM 194 C ARG A 21 208.487 179.589 215.166 1.00 43.43 ATOM 195 O ARG A 21 209.521 179.291 214.560 1.00 53.18 ATOM 196 CB ARG A 21 207.605 177.471 216.153 1.00 43.30 ATOM 197 CG ARG A 21 208.668 176.471 215.739 1.00 40.49 ATOM 198 CD ARG A 21 208.131 175.052 215.769 1.00 42.26 ATOM 199 NE ARG A 21 209.134 174.089 215.329 1.00 45.09 ATOM 200 CZ ARG A 21 208.891 173.068 214.520 1.00 48.27 ATOM 201 NH1 ARG A 21 207.678 172.832 214.049 1.00 40.28 ATOM 202 NH2 ARG A 21 209.890 172.261 214.177 1.00 50.12 ATOM 203 N ALA A 22 207.646 180.529 214.732 1.00 47.31 ATOM 204 CA ALA A 22 207.931 181.271 213.512 1.00 46.18 ATOM 205 C ALA A 22 209.024 182.309 213.719 1.00 48.42 ATOM 206 O ALA A 22 209.745 182.637 212.771 1.00 49.80 ATOM 207 CB ALA A 22 206.659 181.939 212.993 1.00 51.00 ATOM 208 N ARG A 23 209.172 182.836 214.938 1.00 52.47 ATOM 209 CA ARG A 23 210.217 183.827 215.167 1.00 53.88 ATOM 210 C ARG A 23 211.610 183.224 215.063 1.00 58.03 ATOM 211 O ARG A 23 212.590 183.973 215.000 1.00 58.15 ATOM 212 CB ARG A 23 210.050 184.506 216.532 1.00 52.91 ATOM 213 CG ARG A 23 208.794 185.351 216.641 1.00 55.92 ATOM 214 CD ARG A 23 208.625 186.021 218.003 1.00 55.71 ATOM 215 NE ARG A 23 209.645 187.036 218.246 1.00 58.97 ATOM 216 CZ ARG A 23 209.830 187.662 219.401 1.00 61.08 ATOM 217 NH1 ARG A 23 209.152 187.325 220.486 1.00 58.39 ATOM 218 NH2 ARG A 23 210.700 188.669 219.463 1.00 56.80 ATOM 219 N SER A 24 211.718 181.898 215.049 1.00 58.89 ATOM 220 CA SER A 24 212.986 181.205 214.881 1.00 52.69 ATOM 221 C SER A 24 213.153 180.579 213.508 1.00 53.42 ATOM 222 O SER A 24 214.287 180.435 213.046 1.00 57.62 ATOM 223 CB SER A 24 213.141 180.114 215.945 1.00 54.55 ATOM 224 OG SER A 24 213.034 180.657 217.248 1.00 57.93 ATOM 225 N LYS A 25 212.058 180.201 212.854 1.00 53.63 ATOM 226 CA LYS A 25 212.094 179.587 211.529 1.00 55.29 ATOM 227 C LYS A 25 212.873 180.431 210.527 1.00 55.29 ATOM 228 O LYS A 25 214.021 180.128 210.206 1.00 56.64 ATOM 229 CB LYS A 25 210.671 179.366 211.018 1.00 59.10 ATOM 230 CG LYS A 25 210.574 178.683 209.661 1.00 60.59 ATOM 231 CD LYS A 25 209.119 178.413 209.300 1.00 58.62 ATOM 232 CE LYS A 25 208.979 177.868 207.894 1.00 56.86 ATOM 233 NZ LYS A 25 209.592 176.523 207.763 1.00 60.21 TER