HEADER RIBOSOME 31-DEC-69 8EWC TITLE Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) TITLE 2 internal ribosome entry site (IRES), Structure II COMPND MOL_ID: 76; COMPND 2 MOLECULE: 60S ribosomal protein L41-A; COMPND 3 CHAIN: An; EXPDTA ELECTRON MICROSCOPY DBREF 8EWC A 1 25 UNP P0CX86 RL41A_YEAST 1 25 SEQRES 1 An 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 An 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET A 1 183.552 171.754 231.801 1.00 29.64 ATOM 2 CA MET A 1 184.286 172.284 230.659 1.00 27.47 ATOM 3 C MET A 1 183.818 171.641 229.361 1.00 23.71 ATOM 4 O MET A 1 184.182 170.507 229.053 1.00 30.22 ATOM 5 CB MET A 1 185.783 172.073 230.837 1.00 27.33 ATOM 6 CG MET A 1 186.609 172.735 229.766 1.00 20.27 ATOM 7 SD MET A 1 186.512 174.527 229.799 1.00 35.64 ATOM 8 CE MET A 1 186.940 174.929 228.109 1.00 23.64 ATOM 9 N ARG A 2 182.999 172.385 228.620 1.00 16.41 ATOM 10 CA ARG A 2 182.389 171.880 227.398 1.00 11.10 ATOM 11 C ARG A 2 183.449 171.511 226.367 1.00 18.12 ATOM 12 O ARG A 2 184.441 172.223 226.188 1.00 31.36 ATOM 13 CB ARG A 2 181.437 172.931 226.832 1.00 8.73 ATOM 14 CG ARG A 2 180.526 172.455 225.724 1.00 13.68 ATOM 15 CD ARG A 2 179.625 173.592 225.283 1.00 18.02 ATOM 16 NE ARG A 2 178.747 173.222 224.181 1.00 23.25 ATOM 17 CZ ARG A 2 177.631 173.866 223.871 1.00 20.58 ATOM 18 NH1 ARG A 2 177.230 174.923 224.557 1.00 18.91 ATOM 19 NH2 ARG A 2 176.899 173.439 222.847 1.00 6.31 ATOM 20 N ALA A 3 183.237 170.370 225.703 1.00 8.89 ATOM 21 CA ALA A 3 184.217 169.853 224.751 1.00 17.34 ATOM 22 C ALA A 3 184.433 170.813 223.588 1.00 16.67 ATOM 23 O ALA A 3 185.551 170.931 223.073 1.00 12.67 ATOM 24 CB ALA A 3 183.782 168.480 224.241 1.00 22.35 ATOM 25 N LYS A 4 183.376 171.504 223.154 1.00 17.30 ATOM 26 CA LYS A 4 183.510 172.424 222.031 1.00 16.65 ATOM 27 C LYS A 4 184.322 173.661 222.393 1.00 14.45 ATOM 28 O LYS A 4 184.840 174.330 221.493 1.00 18.66 ATOM 29 CB LYS A 4 182.129 172.823 221.503 1.00 15.58 ATOM 30 CG LYS A 4 181.603 174.149 222.017 1.00 16.83 ATOM 31 CD LYS A 4 180.222 174.459 221.467 1.00 16.03 ATOM 32 CE LYS A 4 180.191 174.391 219.954 1.00 11.48 ATOM 33 NZ LYS A 4 178.908 174.909 219.413 1.00 7.85 ATOM 34 N TRP A 5 184.449 173.980 223.682 1.00 13.60 ATOM 35 CA TRP A 5 185.323 175.065 224.102 1.00 13.52 ATOM 36 C TRP A 5 186.730 174.590 224.443 1.00 16.85 ATOM 37 O TRP A 5 187.647 175.415 224.496 1.00 26.21 ATOM 38 CB TRP A 5 184.716 175.815 225.294 1.00 17.61 ATOM 39 CG TRP A 5 183.266 176.238 225.116 1.00 14.53 ATOM 40 CD1 TRP A 5 182.275 176.117 226.041 1.00 12.61 ATOM 41 CD2 TRP A 5 182.663 176.870 223.970 1.00 17.59 ATOM 42 NE1 TRP A 5 181.095 176.609 225.548 1.00 16.64 ATOM 43 CE2 TRP A 5 181.305 177.078 224.279 1.00 20.20 ATOM 44 CE3 TRP A 5 183.135 177.275 222.715 1.00 17.24 ATOM 45 CZ2 TRP A 5 180.416 177.667 223.383 1.00 12.74 ATOM 46 CZ3 TRP A 5 182.250 177.853 221.828 1.00 17.84 ATOM 47 CH2 TRP A 5 180.906 178.042 222.165 1.00 14.45 ATOM 48 N ARG A 6 186.923 173.289 224.682 1.00 14.43 ATOM 49 CA ARG A 6 188.265 172.724 224.580 1.00 20.65 ATOM 50 C ARG A 6 188.801 172.857 223.163 1.00 19.13 ATOM 51 O ARG A 6 189.977 173.179 222.960 1.00 31.64 ATOM 52 CB ARG A 6 188.269 171.252 224.991 1.00 30.40 ATOM 53 CG ARG A 6 187.868 170.975 226.414 1.00 23.12 ATOM 54 CD ARG A 6 188.887 171.538 227.387 1.00 29.15 ATOM 55 NE ARG A 6 190.202 170.916 227.287 1.00 24.54 ATOM 56 CZ ARG A 6 191.308 171.435 227.803 1.00 28.50 ATOM 57 NH1 ARG A 6 191.274 172.523 228.555 1.00 22.47 ATOM 58 NH2 ARG A 6 192.471 170.829 227.588 1.00 34.02 ATOM 59 N LYS A 7 187.948 172.592 222.172 1.00 22.86 ATOM 60 CA LYS A 7 188.341 172.743 220.776 1.00 24.38 ATOM 61 C LYS A 7 188.681 174.191 220.454 1.00 22.01 ATOM 62 O LYS A 7 189.661 174.467 219.754 1.00 21.40 ATOM 63 CB LYS A 7 187.214 172.239 219.874 1.00 16.90 ATOM 64 CG LYS A 7 187.632 171.856 218.468 1.00 19.93 ATOM 65 CD LYS A 7 186.450 171.268 217.715 1.00 16.93 ATOM 66 CE LYS A 7 186.890 170.250 216.682 1.00 23.27 ATOM 67 NZ LYS A 7 185.744 169.777 215.856 1.00 24.59 ATOM 68 N LYS A 8 187.880 175.131 220.959 1.00 16.32 ATOM 69 CA LYS A 8 188.119 176.540 220.673 1.00 17.82 ATOM 70 C LYS A 8 189.355 177.063 221.396 1.00 22.12 ATOM 71 O LYS A 8 190.115 177.859 220.834 1.00 14.65 ATOM 72 CB LYS A 8 186.895 177.364 221.051 1.00 13.01 ATOM 73 CG LYS A 8 186.863 178.703 220.366 1.00 9.14 ATOM 74 CD LYS A 8 185.728 179.547 220.871 1.00 18.73 ATOM 75 CE LYS A 8 185.485 180.707 219.942 1.00 24.91 ATOM 76 NZ LYS A 8 184.433 181.576 220.495 1.00 29.77 ATOM 77 N ARG A 9 189.565 176.643 222.647 1.00 15.37 ATOM 78 CA ARG A 9 190.754 177.074 223.374 1.00 14.77 ATOM 79 C ARG A 9 192.021 176.489 222.766 1.00 9.31 ATOM 80 O ARG A 9 193.083 177.119 222.822 1.00 13.48 ATOM 81 CB ARG A 9 190.646 176.686 224.850 1.00 22.74 ATOM 82 CG ARG A 9 191.724 177.297 225.731 1.00 14.25 ATOM 83 CD ARG A 9 191.845 176.574 227.059 1.00 21.77 ATOM 84 NE ARG A 9 190.780 176.944 227.982 1.00 22.06 ATOM 85 CZ ARG A 9 190.764 176.629 229.270 1.00 19.33 ATOM 86 NH1 ARG A 9 191.748 175.940 229.824 1.00 20.46 ATOM 87 NH2 ARG A 9 189.740 177.020 230.021 1.00 18.11 ATOM 88 N THR A 10 191.927 175.297 222.175 1.00 18.06 ATOM 89 CA THR A 10 193.087 174.701 221.526 1.00 24.97 ATOM 90 C THR A 10 193.444 175.429 220.235 1.00 18.36 ATOM 91 O THR A 10 194.627 175.539 219.895 1.00 21.63 ATOM 92 CB THR A 10 192.826 173.221 221.248 1.00 21.80 ATOM 93 OG1 THR A 10 192.183 172.629 222.384 1.00 21.68 ATOM 94 CG2 THR A 10 194.129 172.492 220.992 1.00 20.98 ATOM 95 N ARG A 11 192.443 175.938 219.512 1.00 19.58 ATOM 96 CA ARG A 11 192.713 176.635 218.258 1.00 21.42 ATOM 97 C ARG A 11 193.351 177.997 218.496 1.00 25.76 ATOM 98 O ARG A 11 194.211 178.423 217.717 1.00 24.42 ATOM 99 CB ARG A 11 191.428 176.778 217.448 1.00 18.17 ATOM 100 CG ARG A 11 190.929 175.468 216.894 1.00 12.25 ATOM 101 CD ARG A 11 189.543 175.599 216.312 1.00 22.87 ATOM 102 NE ARG A 11 189.041 174.302 215.883 1.00 32.85 ATOM 103 CZ ARG A 11 187.936 174.122 215.175 1.00 27.90 ATOM 104 NH1 ARG A 11 187.178 175.141 214.806 1.00 29.56 ATOM 105 NH2 ARG A 11 187.589 172.890 214.821 1.00 25.77 ATOM 106 N ARG A 12 192.937 178.704 219.550 1.00 27.52 ATOM 107 CA ARG A 12 193.650 179.922 219.920 1.00 22.06 ATOM 108 C ARG A 12 195.068 179.605 220.367 1.00 24.53 ATOM 109 O ARG A 12 196.000 180.357 220.067 1.00 27.12 ATOM 110 CB ARG A 12 192.917 180.677 221.026 1.00 25.47 ATOM 111 CG ARG A 12 191.605 181.312 220.629 1.00 26.36 ATOM 112 CD ARG A 12 191.040 182.071 221.816 1.00 33.86 ATOM 113 NE ARG A 12 189.794 182.759 221.509 1.00 32.41 ATOM 114 CZ ARG A 12 188.588 182.244 221.700 1.00 34.26 ATOM 115 NH1 ARG A 12 188.426 181.039 222.220 1.00 35.79 ATOM 116 NH2 ARG A 12 187.518 182.963 221.375 1.00 32.55 ATOM 117 N LEU A 13 195.247 178.492 221.080 1.00 29.41 ATOM 118 CA LEU A 13 196.582 178.069 221.481 1.00 26.45 ATOM 119 C LEU A 13 197.432 177.699 220.272 1.00 29.45 ATOM 120 O LEU A 13 198.618 178.044 220.211 1.00 40.57 ATOM 121 CB LEU A 13 196.476 176.896 222.455 1.00 28.64 ATOM 122 CG LEU A 13 197.748 176.141 222.831 1.00 32.08 ATOM 123 CD1 LEU A 13 198.668 177.028 223.649 1.00 32.98 ATOM 124 CD2 LEU A 13 197.387 174.882 223.601 1.00 31.74 ATOM 125 N LYS A 14 196.843 177.003 219.297 1.00 27.82 ATOM 126 CA LYS A 14 197.582 176.632 218.095 1.00 28.38 ATOM 127 C LYS A 14 197.892 177.843 217.226 1.00 29.05 ATOM 128 O LYS A 14 198.944 177.884 216.579 1.00 27.16 ATOM 129 CB LYS A 14 196.797 175.596 217.292 1.00 30.48 ATOM 130 CG LYS A 14 197.139 174.161 217.641 1.00 37.60 ATOM 131 CD LYS A 14 196.087 173.192 217.136 1.00 33.38 ATOM 132 CE LYS A 14 196.327 172.829 215.683 1.00 34.16 ATOM 133 NZ LYS A 14 195.440 171.721 215.236 1.00 33.32 ATOM 134 N ARG A 15 196.984 178.823 217.181 1.00 28.40 ATOM 135 CA ARG A 15 197.248 180.051 216.438 1.00 27.33 ATOM 136 C ARG A 15 198.421 180.813 217.038 1.00 27.52 ATOM 137 O ARG A 15 199.267 181.342 216.308 1.00 30.31 ATOM 138 CB ARG A 15 195.999 180.928 216.406 1.00 24.52 ATOM 139 CG ARG A 15 195.078 180.648 215.233 1.00 30.37 ATOM 140 CD ARG A 15 194.273 181.881 214.858 1.00 30.11 ATOM 141 NE ARG A 15 193.518 182.419 215.984 1.00 34.29 ATOM 142 CZ ARG A 15 192.390 181.905 216.456 1.00 35.66 ATOM 143 NH1 ARG A 15 191.856 180.812 215.936 1.00 34.29 ATOM 144 NH2 ARG A 15 191.783 182.502 217.477 1.00 28.96 ATOM 145 N LYS A 16 198.471 180.900 218.371 1.00 32.20 ATOM 146 CA LYS A 16 199.636 181.463 219.045 1.00 31.18 ATOM 147 C LYS A 16 200.895 180.676 218.714 1.00 32.53 ATOM 148 O LYS A 16 201.954 181.258 218.454 1.00 27.46 ATOM 149 CB LYS A 16 199.421 181.456 220.559 1.00 28.39 ATOM 150 CG LYS A 16 198.267 182.290 221.073 1.00 35.93 ATOM 151 CD LYS A 16 198.466 183.772 220.895 1.00 34.78 ATOM 152 CE LYS A 16 197.293 184.505 221.516 1.00 33.88 ATOM 153 NZ LYS A 16 197.389 185.966 221.351 1.00 37.42 ATOM 154 N ARG A 17 200.792 179.345 218.719 1.00 32.92 ATOM 155 CA ARG A 17 201.976 178.497 218.656 1.00 27.95 ATOM 156 C ARG A 17 202.646 178.529 217.283 1.00 30.91 ATOM 157 O ARG A 17 203.872 178.409 217.202 1.00 42.86 ATOM 158 CB ARG A 17 201.597 177.073 219.057 1.00 31.24 ATOM 159 CG ARG A 17 202.767 176.143 219.268 1.00 30.21 ATOM 160 CD ARG A 17 202.288 174.751 219.621 1.00 31.42 ATOM 161 NE ARG A 17 201.936 174.655 221.033 1.00 33.63 ATOM 162 CZ ARG A 17 200.753 174.271 221.490 1.00 31.90 ATOM 163 NH1 ARG A 17 199.753 173.993 220.670 1.00 32.41 ATOM 164 NH2 ARG A 17 200.569 174.170 222.801 1.00 30.64 ATOM 165 N ARG A 18 201.883 178.676 216.198 1.00 30.97 ATOM 166 CA ARG A 18 202.528 178.849 214.906 1.00 31.61 ATOM 167 C ARG A 18 202.838 180.308 214.591 1.00 31.97 ATOM 168 O ARG A 18 203.639 180.568 213.689 1.00 36.84 ATOM 169 CB ARG A 18 201.696 178.244 213.768 1.00 34.00 ATOM 170 CG ARG A 18 200.453 179.009 213.339 1.00 30.88 ATOM 171 CD ARG A 18 199.691 178.182 212.304 1.00 35.64 ATOM 172 NE ARG A 18 198.363 178.704 212.012 1.00 37.17 ATOM 173 CZ ARG A 18 197.234 178.168 212.457 1.00 39.89 ATOM 174 NH1 ARG A 18 197.232 177.063 213.181 1.00 35.53 ATOM 175 NH2 ARG A 18 196.076 178.741 212.139 1.00 41.73 ATOM 176 N LYS A 19 202.221 181.255 215.299 1.00 35.07 ATOM 177 CA LYS A 19 202.660 182.640 215.209 1.00 36.44 ATOM 178 C LYS A 19 204.067 182.812 215.770 1.00 34.08 ATOM 179 O LYS A 19 204.918 183.464 215.150 1.00 37.90 ATOM 180 CB LYS A 19 201.684 183.563 215.937 1.00 41.14 ATOM 181 CG LYS A 19 202.057 185.031 215.838 1.00 40.98 ATOM 182 CD LYS A 19 201.013 185.925 216.474 1.00 44.36 ATOM 183 CE LYS A 19 201.483 187.369 216.494 1.00 41.29 ATOM 184 NZ LYS A 19 201.614 187.935 215.128 1.00 34.50 ATOM 185 N VAL A 20 204.330 182.239 216.947 1.00 33.61 ATOM 186 CA VAL A 20 205.644 182.389 217.563 1.00 36.92 ATOM 187 C VAL A 20 206.700 181.606 216.790 1.00 37.16 ATOM 188 O VAL A 20 207.869 182.005 216.750 1.00 39.11 ATOM 189 CB VAL A 20 205.591 181.988 219.055 1.00 34.32 ATOM 190 CG1 VAL A 20 205.344 180.495 219.233 1.00 34.27 ATOM 191 CG2 VAL A 20 206.860 182.419 219.780 1.00 37.19 ATOM 192 N ARG A 21 206.316 180.497 216.153 1.00 36.42 ATOM 193 CA ARG A 21 207.283 179.722 215.383 1.00 37.54 ATOM 194 C ARG A 21 207.668 180.438 214.094 1.00 38.65 ATOM 195 O ARG A 21 208.843 180.441 213.709 1.00 38.06 ATOM 196 CB ARG A 21 206.725 178.332 215.084 1.00 39.21 ATOM 197 CG ARG A 21 207.783 177.247 215.075 1.00 35.33 ATOM 198 CD ARG A 21 207.166 175.864 215.037 1.00 37.77 ATOM 199 NE ARG A 21 208.149 174.859 214.653 1.00 36.97 ATOM 200 CZ ARG A 21 207.957 173.939 213.718 1.00 35.68 ATOM 201 NH1 ARG A 21 206.813 173.851 213.060 1.00 36.23 ATOM 202 NH2 ARG A 21 208.936 173.085 213.439 1.00 35.69 ATOM 203 N ALA A 22 206.690 181.041 213.410 1.00 41.64 ATOM 204 CA ALA A 22 206.990 181.846 212.229 1.00 39.74 ATOM 205 C ALA A 22 207.875 183.035 212.582 1.00 40.35 ATOM 206 O ALA A 22 208.778 183.395 211.818 1.00 41.47 ATOM 207 CB ALA A 22 205.693 182.319 211.574 1.00 41.62 ATOM 208 N ARG A 23 207.604 183.674 213.723 1.00 39.96 ATOM 209 CA ARG A 23 208.525 184.653 214.292 1.00 39.36 ATOM 210 C ARG A 23 209.925 184.077 214.469 1.00 42.41 ATOM 211 O ARG A 23 210.914 184.658 214.008 1.00 37.93 ATOM 212 CB ARG A 23 207.990 185.137 215.638 1.00 42.19 ATOM 213 CG ARG A 23 208.964 186.002 216.407 1.00 43.32 ATOM 214 CD ARG A 23 208.622 186.006 217.884 1.00 41.41 ATOM 215 NE ARG A 23 207.682 187.062 218.230 1.00 40.76 ATOM 216 CZ ARG A 23 208.019 188.331 218.411 1.00 41.48 ATOM 217 NH1 ARG A 23 209.281 188.724 218.360 1.00 42.27 ATOM 218 NH2 ARG A 23 207.070 189.222 218.678 1.00 42.74 ATOM 219 N SER A 24 210.022 182.928 215.129 1.00 51.46 ATOM 220 CA SER A 24 211.287 182.326 215.547 1.00 48.08 ATOM 221 C SER A 24 212.086 181.723 214.407 1.00 42.94 ATOM 222 O SER A 24 213.080 181.047 214.698 1.00 47.40 ATOM 223 CB SER A 24 211.023 181.260 216.610 1.00 45.48 ATOM 224 OG SER A 24 210.476 181.833 217.784 1.00 43.24 ATOM 225 N LYS A 25 211.727 181.912 213.143 1.00 44.11 ATOM 226 CA LYS A 25 212.566 181.451 212.046 1.00 47.21 ATOM 227 C LYS A 25 213.699 182.439 211.790 1.00 48.24 ATOM 228 O LYS A 25 213.886 183.395 212.545 1.00 46.76 ATOM 229 CB LYS A 25 211.736 181.251 210.776 1.00 47.64 ATOM 230 CG LYS A 25 210.609 180.235 210.918 1.00 49.23 ATOM 231 CD LYS A 25 211.138 178.812 211.050 1.00 48.94 ATOM 232 CE LYS A 25 210.838 178.229 212.425 1.00 44.94 ATOM 233 NZ LYS A 25 211.295 176.820 212.560 1.00 46.30 TER