HEADER VIRAL PROTEIN 31-DEC-69 8H6F TITLE Cryo-EM structure of SARS-CoV-2 Spike protein in complex with A6 TITLE 2 repebody COMPND MOL_ID: 2; COMPND 2 MOLECULE: Repebody (A6); COMPND 3 CHAIN: X, Y, Z; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 8H6F X 1 267 PDB 8H6F 8H6F 1 267 SEQRES 1 X 36 THR PRO ILE LYS GLN ILE PHE PRO ASP ASP ALA PHE ALA SEQRES 2 X 36 GLU THR ILE LYS ALA ASN LEU LYS LYS LYS SER VAL THR SEQRES 3 X 36 ASP ALA VAL THR GLN ASN GLU LEU ASN SER ATOM 1 N THR X 8 188.602 189.059 225.023 1.00122.48 ATOM 2 CA THR X 8 189.876 188.387 225.250 1.00122.66 ATOM 3 C THR X 8 189.724 187.260 226.267 1.00121.94 ATOM 4 O THR X 8 189.123 187.452 227.325 1.00125.81 ATOM 5 CB THR X 8 190.955 189.370 225.743 1.00117.58 ATOM 6 OG1 THR X 8 190.790 189.602 227.147 1.00123.16 ATOM 7 CG2 THR X 8 190.851 190.692 224.998 1.00120.38 ATOM 8 N PRO X 9 190.263 186.085 225.945 1.00111.86 ATOM 9 CA PRO X 9 190.164 184.954 226.874 1.00118.46 ATOM 10 C PRO X 9 190.937 185.220 228.158 1.00112.38 ATOM 11 O PRO X 9 192.057 185.734 228.138 1.00118.46 ATOM 12 CB PRO X 9 190.766 183.784 226.084 1.00111.06 ATOM 13 CG PRO X 9 190.856 184.258 224.659 1.00116.06 ATOM 14 CD PRO X 9 191.008 185.739 224.725 1.00111.03 ATOM 15 N ILE X 10 190.322 184.861 229.283 1.00135.59 ATOM 16 CA ILE X 10 190.919 185.040 230.602 1.00137.72 ATOM 17 C ILE X 10 190.914 183.694 231.312 1.00139.71 ATOM 18 O ILE X 10 189.899 182.990 231.313 1.00140.19 ATOM 19 CB ILE X 10 190.173 186.105 231.432 1.00135.84 ATOM 20 CG1 ILE X 10 190.622 186.063 232.894 1.00139.34 ATOM 21 CG2 ILE X 10 188.665 185.922 231.319 1.00133.34 ATOM 22 CD1 ILE X 10 190.381 187.355 233.644 1.00133.09 ATOM 23 N LYS X 11 192.052 183.325 231.893 1.00149.84 ATOM 24 CA LYS X 11 192.185 182.056 232.588 1.00150.43 ATOM 25 C LYS X 11 191.750 182.207 234.048 1.00153.23 ATOM 26 O LYS X 11 191.630 183.316 234.577 1.00156.16 ATOM 27 CB LYS X 11 193.624 181.553 232.478 1.00146.84 ATOM 28 CG LYS X 11 193.822 180.081 232.810 1.00155.36 ATOM 29 CD LYS X 11 192.873 179.198 232.017 1.00149.70 ATOM 30 CE LYS X 11 192.697 177.844 232.683 1.00154.71 ATOM 31 NZ LYS X 11 191.379 177.232 232.361 1.00153.41 ATOM 32 N GLN X 12 191.492 181.069 234.700 1.00235.02 ATOM 33 CA GLN X 12 191.241 181.011 236.143 1.00233.56 ATOM 34 C GLN X 12 189.956 181.744 236.530 1.00231.49 ATOM 35 O GLN X 12 189.841 182.292 237.628 1.00229.98 ATOM 36 CB GLN X 12 192.438 181.558 236.928 1.00236.96 ATOM 37 CG GLN X 12 192.667 180.904 238.281 1.00228.93 ATOM 38 CD GLN X 12 193.680 181.658 239.120 1.00232.63 ATOM 39 OE1 GLN X 12 194.416 182.505 238.613 1.00232.14 ATOM 40 NE2 GLN X 12 193.723 181.353 240.412 1.00233.91 ATOM 41 N ILE X 13 188.978 181.758 235.622 1.00166.06 ATOM 42 CA ILE X 13 187.714 182.426 235.924 1.00166.43 ATOM 43 C ILE X 13 186.625 181.409 236.251 1.00168.16 ATOM 44 O ILE X 13 186.014 181.462 237.325 1.00165.83 ATOM 45 CB ILE X 13 187.302 183.352 234.765 1.00172.50 ATOM 46 CG1 ILE X 13 185.829 183.749 234.899 1.00167.69 ATOM 47 CG2 ILE X 13 187.572 182.693 233.421 1.00169.89 ATOM 48 CD1 ILE X 13 185.379 184.788 233.894 1.00171.82 ATOM 49 N PHE X 14 186.353 180.442 235.311 1.00195.70 ATOM 50 CA PHE X 14 185.253 179.507 235.499 1.00188.83 ATOM 51 C PHE X 14 185.703 178.263 236.259 1.00191.48 ATOM 52 O PHE X 14 186.594 177.537 235.805 1.00189.93 ATOM 53 CB PHE X 14 184.671 179.086 234.152 1.00193.45 ATOM 54 CG PHE X 14 184.211 180.232 233.302 1.00190.55 ATOM 55 CD1 PHE X 14 183.306 181.157 233.797 1.00196.41 ATOM 56 CD2 PHE X 14 184.679 180.386 232.007 1.00195.41 ATOM 57 CE1 PHE X 14 182.877 182.214 233.017 1.00192.66 ATOM 58 CE2 PHE X 14 184.255 181.441 231.223 1.00194.80 ATOM 59 CZ PHE X 14 183.353 182.356 231.728 1.00189.28 ATOM 60 N PRO X 15 185.099 178.001 237.420 1.00162.92 ATOM 61 CA PRO X 15 185.338 176.714 238.088 1.00165.59 ATOM 62 C PRO X 15 184.569 175.568 237.456 1.00168.19 ATOM 63 O PRO X 15 185.037 174.423 237.486 1.00165.74 ATOM 64 CB PRO X 15 184.868 176.986 239.523 1.00160.02 ATOM 65 CG PRO X 15 183.796 178.016 239.338 1.00164.48 ATOM 66 CD PRO X 15 184.374 178.934 238.298 1.00164.52 ATOM 67 N ASP X 16 183.398 175.846 236.888 1.00174.54 ATOM 68 CA ASP X 16 182.550 174.800 236.330 1.00173.28 ATOM 69 C ASP X 16 182.900 174.563 234.866 1.00175.38 ATOM 70 O ASP X 16 182.838 175.487 234.047 1.00171.92 ATOM 71 CB ASP X 16 181.081 175.188 236.470 1.00167.93 ATOM 72 CG ASP X 16 180.845 176.669 236.238 1.00174.08 ATOM 73 OD1 ASP X 16 181.831 177.401 236.008 1.00172.61 ATOM 74 OD2 ASP X 16 179.675 177.102 236.284 1.00166.60 ATOM 75 N ASP X 17 183.269 173.325 234.537 1.00165.70 ATOM 76 CA ASP X 17 183.507 172.964 233.144 1.00171.77 ATOM 77 C ASP X 17 182.257 172.368 232.506 1.00167.03 ATOM 78 O ASP X 17 181.830 172.805 231.431 1.00164.64 ATOM 79 CB ASP X 17 184.685 171.990 233.049 1.00167.77 ATOM 80 CG ASP X 17 184.600 170.866 234.068 1.00172.78 ATOM 81 OD1 ASP X 17 183.503 170.637 234.620 1.00172.34 ATOM 82 OD2 ASP X 17 185.633 170.211 234.319 1.00172.41 ATOM 83 N ALA X 18 181.656 171.373 233.163 1.00198.86 ATOM 84 CA ALA X 18 180.478 170.714 232.609 1.00193.21 ATOM 85 C ALA X 18 179.297 171.673 232.516 1.00193.87 ATOM 86 O ALA X 18 178.557 171.668 231.526 1.00194.53 ATOM 87 CB ALA X 18 180.116 169.493 233.456 1.00196.93 ATOM 88 N PHE X 19 179.100 172.502 233.545 1.00144.49 ATOM 89 CA PHE X 19 177.961 173.415 233.544 1.00151.01 ATOM 90 C PHE X 19 178.084 174.454 232.436 1.00144.43 ATOM 91 O PHE X 19 177.119 174.708 231.706 1.00148.80 ATOM 92 CB PHE X 19 177.831 174.092 234.908 1.00141.99 ATOM 93 CG PHE X 19 176.577 174.905 235.065 1.00150.77 ATOM 94 CD1 PHE X 19 175.381 174.471 234.515 1.00149.29 ATOM 95 CD2 PHE X 19 176.591 176.100 235.767 1.00149.83 ATOM 96 CE1 PHE X 19 174.225 175.214 234.659 1.00142.22 ATOM 97 CE2 PHE X 19 175.437 176.847 235.914 1.00146.10 ATOM 98 CZ PHE X 19 174.252 176.403 235.360 1.00141.61 ATOM 99 N ALA X 20 179.266 175.057 232.285 1.00131.69 ATOM 100 CA ALA X 20 179.467 176.025 231.212 1.00133.52 ATOM 101 C ALA X 20 179.357 175.362 229.845 1.00132.97 ATOM 102 O ALA X 20 178.785 175.938 228.909 1.00131.03 ATOM 103 CB ALA X 20 180.824 176.712 231.370 1.00128.66 ATOM 104 N GLU X 21 179.902 174.149 229.710 1.00167.20 ATOM 105 CA GLU X 21 179.812 173.437 228.441 1.00162.50 ATOM 106 C GLU X 21 178.363 173.162 228.064 1.00167.19 ATOM 107 O GLU X 21 177.963 173.376 226.915 1.00168.11 ATOM 108 CB GLU X 21 180.604 172.131 228.516 1.00166.55 ATOM 109 CG GLU X 21 182.036 172.243 228.024 1.00165.01 ATOM 110 CD GLU X 21 182.857 171.010 228.343 1.00169.15 ATOM 111 OE1 GLU X 21 182.682 169.983 227.655 1.00168.10 ATOM 112 OE2 GLU X 21 183.678 171.067 229.283 1.00170.59 ATOM 113 N THR X 22 177.552 172.709 229.024 1.00129.82 ATOM 114 CA THR X 22 176.155 172.429 228.717 1.00129.81 ATOM 115 C THR X 22 175.366 173.714 228.489 1.00130.98 ATOM 116 O THR X 22 174.424 173.719 227.689 1.00134.09 ATOM 117 CB THR X 22 175.523 171.574 229.823 1.00126.63 ATOM 118 OG1 THR X 22 174.412 170.844 229.287 1.00134.68 ATOM 119 CG2 THR X 22 175.045 172.423 230.993 1.00126.80 ATOM 120 N ILE X 23 175.749 174.813 229.145 1.00132.13 ATOM 121 CA ILE X 23 175.095 176.092 228.887 1.00128.48 ATOM 122 C ILE X 23 175.358 176.543 227.456 1.00128.41 ATOM 123 O ILE X 23 174.444 176.988 226.752 1.00127.53 ATOM 124 CB ILE X 23 175.560 177.147 229.908 1.00126.02 ATOM 125 CG1 ILE X 23 174.821 176.977 231.234 1.00129.16 ATOM 126 CG2 ILE X 23 175.346 178.555 229.367 1.00129.29 ATOM 127 CD1 ILE X 23 175.428 177.773 232.365 1.00125.83 ATOM 128 N LYS X 24 176.605 176.422 226.998 1.00158.81 ATOM 129 CA LYS X 24 176.937 176.865 225.648 1.00156.52 ATOM 130 C LYS X 24 176.539 175.851 224.581 1.00153.53 ATOM 131 O LYS X 24 176.520 176.199 223.395 1.00152.18 ATOM 132 CB LYS X 24 178.434 177.171 225.539 1.00156.67 ATOM 133 CG LYS X 24 178.976 178.141 226.587 1.00153.49 ATOM 134 CD LYS X 24 177.992 179.265 226.891 1.00157.74 ATOM 135 CE LYS X 24 178.699 180.490 227.444 1.00153.95 ATOM 136 NZ LYS X 24 177.889 181.165 228.495 1.00161.56 ATOM 137 N ALA X 25 176.221 174.614 224.965 1.00111.53 ATOM 138 CA ALA X 25 175.874 173.593 223.985 1.00111.17 ATOM 139 C ALA X 25 174.375 173.374 223.828 1.00118.27 ATOM 140 O ALA X 25 173.909 173.204 222.695 1.00118.17 ATOM 141 CB ALA X 25 176.539 172.263 224.354 1.00113.49 ATOM 142 N ASN X 26 173.608 173.362 224.923 1.00132.71 ATOM 143 CA ASN X 26 172.185 173.053 224.814 1.00132.31 ATOM 144 C ASN X 26 171.415 174.143 224.075 1.00134.28 ATOM 145 O ASN X 26 170.431 173.845 223.388 1.00131.55 ATOM 146 CB ASN X 26 171.591 172.793 226.205 1.00129.27 ATOM 147 CG ASN X 26 171.567 174.034 227.098 1.00134.05 ATOM 148 OD1 ASN X 26 171.350 175.157 226.645 1.00135.50 ATOM 149 ND2 ASN X 26 171.795 173.821 228.389 1.00132.51 ATOM 150 N LEU X 27 171.840 175.401 224.203 1.00135.65 ATOM 151 CA LEU X 27 171.137 176.494 223.542 1.00137.83 ATOM 152 C LEU X 27 171.304 176.465 222.028 1.00140.61 ATOM 153 O LEU X 27 170.426 176.964 221.315 1.00133.75 ATOM 154 CB LEU X 27 171.614 177.840 224.092 1.00140.45 ATOM 155 CG LEU X 27 171.175 178.189 225.517 1.00134.48 ATOM 156 CD1 LEU X 27 171.477 179.646 225.834 1.00133.84 ATOM 157 CD2 LEU X 27 169.696 177.888 225.720 1.00139.04 ATOM 158 N LYS X 28 172.403 175.895 221.527 1.00148.84 ATOM 159 CA LYS X 28 172.680 175.810 220.092 1.00142.96 ATOM 160 C LYS X 28 172.696 177.202 219.456 1.00147.88 ATOM 161 O LYS X 28 171.864 177.545 218.613 1.00144.15 ATOM 162 CB LYS X 28 171.678 174.887 219.391 1.00145.69 ATOM 163 CG LYS X 28 172.163 174.345 218.054 1.00141.58 ATOM 164 CD LYS X 28 173.403 173.480 218.221 1.00140.74 ATOM 165 CE LYS X 28 173.055 172.118 218.798 1.00140.63 ATOM 166 NZ LYS X 28 174.246 171.447 219.388 1.00139.96 ATOM 167 N LYS X 29 173.666 178.006 219.887 1.00189.81 ATOM 168 CA LYS X 29 173.792 179.371 219.402 1.00187.76 ATOM 169 C LYS X 29 174.148 179.394 217.917 1.00193.42 ATOM 170 O LYS X 29 174.519 178.380 217.319 1.00192.29 ATOM 171 CB LYS X 29 174.852 180.129 220.201 1.00189.35 ATOM 172 CG LYS X 29 174.586 180.191 221.697 1.00188.31 ATOM 173 CD LYS X 29 175.527 181.174 222.377 1.00193.08 ATOM 174 CE LYS X 29 175.371 181.140 223.888 1.00192.22 ATOM 175 NZ LYS X 29 173.948 181.282 224.297 1.00196.60 ATOM 176 N LYS X 30 174.026 180.583 217.322 1.00199.06 ATOM 177 CA LYS X 30 174.293 180.732 215.895 1.00196.93 ATOM 178 C LYS X 30 175.768 180.512 215.584 1.00195.58 ATOM 179 O LYS X 30 176.116 179.761 214.665 1.00198.53 ATOM 180 CB LYS X 30 173.845 182.115 215.422 1.00202.79 ATOM 181 CG LYS X 30 172.379 182.418 215.679 1.00202.28 ATOM 182 CD LYS X 30 171.476 181.463 214.918 1.00204.06 ATOM 183 CE LYS X 30 170.010 181.791 215.149 1.00196.77 ATOM 184 NZ LYS X 30 169.674 183.170 214.699 1.00200.11 ATOM 185 N SER X 31 176.652 181.155 216.342 1.00132.59 ATOM 186 CA SER X 31 178.085 181.060 216.101 1.00133.69 ATOM 187 C SER X 31 178.820 181.450 217.378 1.00132.91 ATOM 188 O SER X 31 178.208 181.713 218.417 1.00141.92 ATOM 189 CB SER X 31 178.507 181.936 214.918 1.00141.87 ATOM 190 OG SER X 31 178.514 183.307 215.276 1.00136.50 ATOM 191 N VAL X 32 180.151 181.484 217.288 1.00 93.04 ATOM 192 CA VAL X 32 180.980 181.819 218.441 1.00 93.16 ATOM 193 C VAL X 32 181.325 183.305 218.477 1.00 95.94 ATOM 194 O VAL X 32 181.657 183.836 219.545 1.00 94.71 ATOM 195 CB VAL X 32 182.247 180.941 218.424 1.00 95.16 ATOM 196 CG1 VAL X 32 183.196 181.291 219.566 1.00 88.59 ATOM 197 CG2 VAL X 32 181.871 179.468 218.474 1.00 92.47 ATOM 198 N THR X 33 181.196 184.006 217.353 1.00 99.45 ATOM 199 CA THR X 33 181.633 185.392 217.241 1.00100.28 ATOM 200 C THR X 33 180.651 186.387 217.847 1.00102.55 ATOM 201 O THR X 33 180.751 187.584 217.558 1.00 97.62 ATOM 202 CB THR X 33 181.875 185.751 215.770 1.00104.49 ATOM 203 OG1 THR X 33 180.654 185.605 215.034 1.00 96.94 ATOM 204 CG2 THR X 33 182.937 184.844 215.167 1.00102.85 ATOM 205 N ASP X 34 179.716 185.932 218.674 1.00137.43 ATOM 206 CA ASP X 34 178.770 186.823 219.329 1.00146.21 ATOM 207 C ASP X 34 179.318 187.284 220.675 1.00141.94 ATOM 208 O ASP X 34 180.246 186.689 221.229 1.00142.84 ATOM 209 CB ASP X 34 177.420 186.132 219.524 1.00139.97 ATOM 210 CG ASP X 34 176.263 187.111 219.540 1.00141.77 ATOM 211 OD1 ASP X 34 175.991 187.727 218.489 1.00142.38 ATOM 212 OD2 ASP X 34 175.626 187.265 220.603 1.00143.31 ATOM 213 N ALA X 35 178.731 188.358 221.196 1.00119.97 ATOM 214 CA ALA X 35 179.175 188.914 222.464 1.00113.28 ATOM 215 C ALA X 35 178.485 188.216 223.633 1.00119.81 ATOM 216 O ALA X 35 177.547 187.432 223.463 1.00122.06 ATOM 217 CB ALA X 35 178.906 190.417 222.515 1.00116.86 ATOM 218 N VAL X 36 178.966 188.515 224.839 1.00147.24 ATOM 219 CA VAL X 36 178.432 187.932 226.061 1.00151.91 ATOM 220 C VAL X 36 178.119 189.049 227.048 1.00150.23 ATOM 221 O VAL X 36 178.738 190.116 227.042 1.00147.30 ATOM 222 CB VAL X 36 179.401 186.909 226.691 1.00153.28 ATOM 223 CG1 VAL X 36 179.483 185.656 225.834 1.00147.39 ATOM 224 CG2 VAL X 36 180.777 187.527 226.877 1.00153.17 ATOM 225 N THR X 37 177.137 188.784 227.907 1.00120.60 ATOM 226 CA THR X 37 176.732 189.710 228.955 1.00120.55 ATOM 227 C THR X 37 176.208 188.884 230.125 1.00128.31 ATOM 228 O THR X 37 176.355 187.660 230.160 1.00120.69 ATOM 229 CB THR X 37 175.674 190.707 228.452 1.00118.90 ATOM 230 OG1 THR X 37 175.922 191.014 227.075 1.00123.47 ATOM 231 CG2 THR X 37 175.741 192.014 229.239 1.00123.28 ATOM 232 N GLN X 38 175.590 189.560 231.092 1.00147.00 ATOM 233 CA GLN X 38 175.038 188.886 232.259 1.00154.01 ATOM 234 C GLN X 38 173.517 188.936 232.324 1.00145.27 ATOM 235 O GLN X 38 172.896 187.940 232.709 1.00152.36 ATOM 236 CB GLN X 38 175.630 189.483 233.544 1.00149.56 ATOM 237 CG GLN X 38 175.355 190.967 233.751 1.00149.53 ATOM 238 CD GLN X 38 174.367 191.229 234.870 1.00152.91 ATOM 239 OE1 GLN X 38 174.288 190.469 235.835 1.00146.81 ATOM 240 NE2 GLN X 38 173.609 192.312 234.749 1.00144.84 ATOM 241 N ASN X 39 172.902 190.060 231.944 1.00223.01 ATOM 242 CA ASN X 39 171.445 190.148 231.965 1.00218.84 ATOM 243 C ASN X 39 170.817 189.187 230.963 1.00217.77 ATOM 244 O ASN X 39 169.825 188.516 231.272 1.00218.28 ATOM 245 CB ASN X 39 171.001 191.583 231.684 1.00220.53 ATOM 246 CG ASN X 39 169.620 191.884 232.235 1.00220.56 ATOM 247 OD1 ASN X 39 169.139 191.205 233.143 1.00216.83 ATOM 248 ND2 ASN X 39 168.973 192.905 231.685 1.00224.06 ATOM 249 N GLU X 40 171.382 189.105 229.756 1.00187.67 ATOM 250 CA GLU X 40 170.832 188.207 228.746 1.00186.91 ATOM 251 C GLU X 40 171.147 186.750 229.057 1.00186.99 ATOM 252 O GLU X 40 170.355 185.861 228.723 1.00185.47 ATOM 253 CB GLU X 40 171.365 188.581 227.363 1.00179.27 ATOM 254 CG GLU X 40 171.519 190.078 227.142 1.00181.98 ATOM 255 CD GLU X 40 172.207 190.409 225.831 1.00185.01 ATOM 256 OE1 GLU X 40 172.299 189.516 224.962 1.00183.96 ATOM 257 OE2 GLU X 40 172.655 191.563 225.669 1.00186.06 ATOM 258 N LEU X 41 172.290 186.486 229.695 1.00176.59 ATOM 259 CA LEU X 41 172.641 185.113 230.042 1.00177.23 ATOM 260 C LEU X 41 171.798 184.601 231.203 1.00173.02 ATOM 261 O LEU X 41 171.459 183.413 231.256 1.00178.58 ATOM 262 CB LEU X 41 174.128 185.020 230.382 1.00171.81 ATOM 263 CG LEU X 41 175.011 184.278 229.378 1.00179.10 ATOM 264 CD1 LEU X 41 176.414 184.092 229.939 1.00171.41 ATOM 265 CD2 LEU X 41 174.389 182.934 229.019 1.00179.83 ATOM 266 N ASN X 42 171.450 185.479 232.143 1.00178.49 ATOM 267 CA ASN X 42 170.741 185.068 233.345 1.00174.61 ATOM 268 C ASN X 42 169.225 185.116 233.190 1.00177.96 ATOM 269 O ASN X 42 168.513 185.186 234.200 1.00170.98 ATOM 270 CB ASN X 42 171.176 185.930 234.531 1.00171.97 ATOM 271 CG ASN X 42 172.062 185.175 235.492 1.00170.27 ATOM 272 OD1 ASN X 42 171.699 184.103 235.972 1.00175.12 ATOM 273 ND2 ASN X 42 173.236 185.728 235.777 1.00176.90 ATOM 274 N SER X 43 168.715 185.087 231.957 1.00159.25 ATOM 275 CA SER X 43 167.273 185.060 231.747 1.00160.95 ATOM 276 C SER X 43 166.638 183.780 232.273 1.00157.51 ATOM 277 O SER X 43 165.425 183.754 232.506 1.00161.84 ATOM 278 CB SER X 43 166.952 185.226 230.261 1.00157.67 ATOM 279 OG SER X 43 167.089 183.995 229.574 1.00162.83 TER