HEADER TRANSCRIPTION/DNA 31-DEC-69 8SSR TITLE ZnFs 3-11 of CCCTC-binding factor (CTCF) Complexed with 35mer DNA TITLE 2 35-20 COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: Zinc finger domains ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.14 ANGSTORMS DBREF 8SSR A 319 606 UNP P49711 CTCF_HUMAN 319 606 SEQRES 1 A 28 THR ARG PRO HIS LYS CYS PRO ASP CYS ASP MET ALA PHE SEQRES 2 A 28 VAL THR SER GLY GLU LEU VAL ARG HIS ARG ARG TYR LYS SEQRES 3 A 28 HIS THR ATOM 1 N THR A 1 -72.508 -10.073 -21.521 1.00349.48 ATOM 2 CA THR A 1 -71.490 -9.695 -20.548 1.00352.75 ATOM 3 C THR A 1 -72.069 -8.770 -19.482 1.00361.91 ATOM 4 O THR A 1 -71.936 -7.548 -19.569 1.00373.93 ATOM 5 CB THR A 1 -70.293 -9.002 -21.224 1.00354.03 ATOM 6 N ARG A 2 -72.712 -9.371 -18.479 1.00353.84 ATOM 7 CA ARG A 2 -73.326 -8.671 -17.355 1.00352.79 ATOM 8 C ARG A 2 -74.326 -7.617 -17.820 1.00365.04 ATOM 9 O ARG A 2 -74.082 -6.416 -17.641 1.00365.77 ATOM 10 CB ARG A 2 -72.251 -8.021 -16.482 1.00341.34 ATOM 11 CG ARG A 2 -71.160 -8.974 -16.019 1.00332.54 ATOM 12 CD ARG A 2 -70.079 -8.233 -15.249 1.00327.63 ATOM 13 NE ARG A 2 -68.998 -9.118 -14.832 1.00319.23 ATOM 14 CZ ARG A 2 -68.976 -9.783 -13.686 1.00317.04 ATOM 15 NH1 ARG A 2 -69.966 -9.691 -12.813 1.00320.58 ATOM 16 NH2 ARG A 2 -67.933 -10.561 -13.407 1.00307.77 ATOM 17 N PRO A 3 -75.450 -8.012 -18.428 1.00385.92 ATOM 18 CA PRO A 3 -76.469 -7.011 -18.791 1.00390.09 ATOM 19 C PRO A 3 -77.032 -6.251 -17.601 1.00383.20 ATOM 20 O PRO A 3 -77.374 -5.071 -17.741 1.00394.20 ATOM 21 CB PRO A 3 -77.550 -7.851 -19.485 1.00382.91 ATOM 22 CG PRO A 3 -76.831 -9.057 -19.981 1.00374.29 ATOM 23 CD PRO A 3 -75.789 -9.349 -18.945 1.00375.77 ATOM 24 N HIS A 4 -77.141 -6.886 -16.438 1.00352.58 ATOM 25 CA HIS A 4 -77.724 -6.265 -15.258 1.00337.36 ATOM 26 C HIS A 4 -76.641 -5.835 -14.276 1.00335.46 ATOM 27 O HIS A 4 -75.583 -6.460 -14.172 1.00336.07 ATOM 28 CB HIS A 4 -78.699 -7.219 -14.565 1.00321.01 ATOM 29 CG HIS A 4 -80.068 -7.233 -15.171 1.00305.52 ATOM 30 ND1 HIS A 4 -80.372 -7.946 -16.311 1.00311.51 ATOM 31 CD2 HIS A 4 -81.215 -6.619 -14.795 1.00297.40 ATOM 32 CE1 HIS A 4 -81.647 -7.772 -16.610 1.00308.83 ATOM 33 NE2 HIS A 4 -82.181 -6.970 -15.706 1.00303.35 ATOM 34 N LYS A 5 -76.920 -4.750 -13.554 1.00303.36 ATOM 35 CA LYS A 5 -76.012 -4.226 -12.545 1.00295.37 ATOM 36 C LYS A 5 -76.803 -3.833 -11.306 1.00287.07 ATOM 37 O LYS A 5 -77.969 -3.440 -11.394 1.00279.62 ATOM 38 CB LYS A 5 -75.223 -3.014 -13.061 1.00294.31 ATOM 39 CG LYS A 5 -74.306 -3.313 -14.234 1.00302.55 ATOM 40 CD LYS A 5 -73.527 -2.077 -14.649 1.00308.63 ATOM 41 CE LYS A 5 -72.592 -2.377 -15.808 1.00317.69 ATOM 42 NZ LYS A 5 -71.600 -3.430 -15.461 1.00314.58 ATOM 43 N CYS A 6 -76.156 -3.945 -10.151 1.00307.59 ATOM 44 CA CYS A 6 -76.775 -3.532 -8.897 1.00305.51 ATOM 45 C CYS A 6 -76.618 -2.027 -8.719 1.00305.20 ATOM 46 O CYS A 6 -75.490 -1.523 -8.767 1.00314.93 ATOM 47 CB CYS A 6 -76.149 -4.268 -7.720 1.00309.89 ATOM 48 SG CYS A 6 -76.854 -3.831 -6.114 1.00305.48 ATOM 49 N PRO A 7 -77.705 -1.278 -8.520 1.00276.09 ATOM 50 CA PRO A 7 -77.568 0.182 -8.403 1.00267.42 ATOM 51 C PRO A 7 -76.900 0.632 -7.116 1.00278.39 ATOM 52 O PRO A 7 -76.247 1.682 -7.109 1.00268.06 ATOM 53 CB PRO A 7 -79.019 0.674 -8.485 1.00267.49 ATOM 54 CG PRO A 7 -79.820 -0.466 -7.949 1.00264.45 ATOM 55 CD PRO A 7 -79.105 -1.718 -8.389 1.00267.31 ATOM 56 N ASP A 8 -77.038 -0.125 -6.030 1.00308.14 ATOM 57 CA ASP A 8 -76.552 0.301 -4.724 1.00301.46 ATOM 58 C ASP A 8 -75.144 -0.191 -4.413 1.00308.06 ATOM 59 O ASP A 8 -74.600 0.166 -3.362 1.00309.58 ATOM 60 CB ASP A 8 -77.511 -0.176 -3.629 1.00287.61 ATOM 61 CG ASP A 8 -78.964 -0.088 -4.048 1.00280.99 ATOM 62 OD1 ASP A 8 -79.333 0.893 -4.728 1.00293.60 ATOM 63 OD2 ASP A 8 -79.738 -1.006 -3.701 1.00264.96 ATOM 64 N CYS A 9 -74.540 -0.993 -5.285 1.00280.83 ATOM 65 CA CYS A 9 -73.205 -1.522 -5.038 1.00275.33 ATOM 66 C CYS A 9 -72.485 -1.666 -6.375 1.00291.29 ATOM 67 O CYS A 9 -72.963 -1.195 -7.412 1.00296.31 ATOM 68 CB CYS A 9 -73.279 -2.850 -4.274 1.00271.93 ATOM 69 SG CYS A 9 -74.020 -4.205 -5.207 1.00301.26 ATOM 70 N ASP A 10 -71.325 -2.319 -6.347 1.00346.35 ATOM 71 CA ASP A 10 -70.486 -2.470 -7.528 1.00356.39 ATOM 72 C ASP A 10 -70.728 -3.768 -8.288 1.00352.94 ATOM 73 O ASP A 10 -70.136 -3.959 -9.356 1.00352.20 ATOM 74 CB ASP A 10 -69.008 -2.388 -7.131 1.00360.47 ATOM 75 CG ASP A 10 -68.634 -3.399 -6.063 1.00349.41 ATOM 76 OD1 ASP A 10 -69.544 -4.062 -5.520 1.00341.35 ATOM 77 OD2 ASP A 10 -67.428 -3.535 -5.766 1.00345.37 ATOM 78 N MET A 11 -71.574 -4.657 -7.775 1.00310.83 ATOM 79 CA MET A 11 -71.752 -5.962 -8.398 1.00293.89 ATOM 80 C MET A 11 -72.580 -5.858 -9.674 1.00288.08 ATOM 81 O MET A 11 -73.547 -5.095 -9.750 1.00280.71 ATOM 82 CB MET A 11 -72.418 -6.929 -7.420 1.00282.79 ATOM 83 CG MET A 11 -71.558 -7.289 -6.220 1.00276.74 ATOM 84 SD MET A 11 -70.037 -8.137 -6.685 1.00286.77 ATOM 85 CE MET A 11 -69.296 -8.406 -5.077 1.00257.24 ATOM 86 N ALA A 12 -72.189 -6.638 -10.681 1.00333.30 ATOM 87 CA ALA A 12 -72.915 -6.741 -11.940 1.00334.03 ATOM 88 C ALA A 12 -73.143 -8.212 -12.251 1.00333.57 ATOM 89 O ALA A 12 -72.211 -9.018 -12.160 1.00333.27 ATOM 90 CB ALA A 12 -72.150 -6.065 -13.083 1.00340.89 ATOM 91 N PHE A 13 -74.375 -8.559 -12.617 1.00334.14 ATOM 92 CA PHE A 13 -74.763 -9.947 -12.824 1.00332.04 ATOM 93 C PHE A 13 -75.403 -10.119 -14.195 1.00334.23 ATOM 94 O PHE A 13 -76.015 -9.194 -14.737 1.00336.35 ATOM 95 CB PHE A 13 -75.722 -10.424 -11.725 1.00328.65 ATOM 96 CG PHE A 13 -75.039 -10.729 -10.421 1.00321.81 ATOM 97 CD1 PHE A 13 -74.547 -9.710 -9.623 1.00322.44 ATOM 98 CD2 PHE A 13 -74.886 -12.037 -9.996 1.00304.22 ATOM 99 CE1 PHE A 13 -73.915 -9.990 -8.428 1.00315.58 ATOM 100 CE2 PHE A 13 -74.259 -12.323 -8.799 1.00291.81 ATOM 101 CZ PHE A 13 -73.770 -11.299 -8.016 1.00300.92 ATOM 102 N VAL A 14 -75.249 -11.323 -14.750 1.00329.70 ATOM 103 CA VAL A 14 -75.682 -11.580 -16.121 1.00323.01 ATOM 104 C VAL A 14 -77.203 -11.586 -16.221 1.00311.94 ATOM 105 O VAL A 14 -77.787 -10.924 -17.087 1.00319.01 ATOM 106 CB VAL A 14 -75.081 -12.903 -16.631 1.00308.19 ATOM 107 CG1 VAL A 14 -75.593 -13.214 -18.030 1.00317.79 ATOM 108 CG2 VAL A 14 -73.562 -12.837 -16.615 1.00309.39 ATOM 109 N THR A 15 -77.869 -12.326 -15.341 1.00300.28 ATOM 110 CA THR A 15 -79.304 -12.537 -15.444 1.00298.01 ATOM 111 C THR A 15 -80.043 -11.744 -14.375 1.00290.88 ATOM 112 O THR A 15 -79.462 -11.295 -13.383 1.00288.77 ATOM 113 CB THR A 15 -79.657 -14.023 -15.314 1.00296.73 ATOM 114 OG1 THR A 15 -79.621 -14.405 -13.934 1.00287.31 ATOM 115 CG2 THR A 15 -78.669 -14.875 -16.094 1.00302.20 ATOM 116 N SER A 16 -81.348 -11.573 -14.600 1.00292.47 ATOM 117 CA SER A 16 -82.188 -10.927 -13.598 1.00286.11 ATOM 118 C SER A 16 -82.257 -11.761 -12.326 1.00277.44 ATOM 119 O SER A 16 -82.254 -11.215 -11.217 1.00278.14 ATOM 120 CB SER A 16 -83.589 -10.686 -14.161 1.00296.17 ATOM 121 OG SER A 16 -84.242 -11.909 -14.454 1.00302.23 ATOM 122 N GLY A 17 -82.317 -13.087 -12.467 1.00287.08 ATOM 123 CA GLY A 17 -82.365 -13.945 -11.294 1.00272.67 ATOM 124 C GLY A 17 -81.105 -13.867 -10.454 1.00264.74 ATOM 125 O GLY A 17 -81.171 -13.801 -9.224 1.00260.86 ATOM 126 N GLU A 18 -79.937 -13.879 -11.104 1.00268.70 ATOM 127 CA GLU A 18 -78.680 -13.785 -10.367 1.00278.29 ATOM 128 C GLU A 18 -78.555 -12.444 -9.654 1.00288.44 ATOM 129 O GLU A 18 -78.134 -12.388 -8.493 1.00294.45 ATOM 130 CB GLU A 18 -77.498 -13.998 -11.312 1.00277.66 ATOM 131 CG GLU A 18 -77.407 -15.394 -11.902 1.00274.01 ATOM 132 CD GLU A 18 -76.309 -15.510 -12.941 1.00281.25 ATOM 133 OE1 GLU A 18 -75.418 -14.634 -12.967 1.00281.90 ATOM 134 OE2 GLU A 18 -76.339 -16.471 -13.738 1.00286.68 ATOM 135 N LEU A 19 -78.913 -11.351 -10.335 1.00297.71 ATOM 136 CA LEU A 19 -78.845 -10.036 -9.704 1.00302.24 ATOM 137 C LEU A 19 -79.860 -9.913 -8.574 1.00288.43 ATOM 138 O LEU A 19 -79.571 -9.303 -7.538 1.00293.35 ATOM 139 CB LEU A 19 -79.067 -8.937 -10.743 1.00305.81 ATOM 140 CG LEU A 19 -78.843 -7.515 -10.222 1.00310.78 ATOM 141 CD1 LEU A 19 -77.357 -7.240 -10.026 1.00318.73 ATOM 142 CD2 LEU A 19 -79.472 -6.482 -11.143 1.00317.77 ATOM 143 N VAL A 20 -81.056 -10.478 -8.759 1.00260.80 ATOM 144 CA VAL A 20 -82.065 -10.447 -7.703 1.00254.36 ATOM 145 C VAL A 20 -81.568 -11.196 -6.473 1.00259.41 ATOM 146 O VAL A 20 -81.670 -10.705 -5.343 1.00242.16 ATOM 147 CB VAL A 20 -83.399 -11.020 -8.216 1.00252.19 ATOM 148 CG1 VAL A 20 -84.243 -11.533 -7.059 1.00245.62 ATOM 149 CG2 VAL A 20 -84.160 -9.961 -8.997 1.00257.77 ATOM 150 N ARG A 21 -81.003 -12.389 -6.678 1.00271.20 ATOM 151 CA ARG A 21 -80.484 -13.165 -5.556 1.00257.85 ATOM 152 C ARG A 21 -79.352 -12.426 -4.854 1.00260.58 ATOM 153 O ARG A 21 -79.253 -12.449 -3.621 1.00264.43 ATOM 154 CB ARG A 21 -80.008 -14.533 -6.037 1.00248.42 ATOM 155 CG ARG A 21 -79.462 -15.421 -4.934 1.00230.81 ATOM 156 CD ARG A 21 -78.740 -16.613 -5.520 1.00235.71 ATOM 157 NE ARG A 21 -77.641 -16.195 -6.381 1.00239.26 ATOM 158 CZ ARG A 21 -76.931 -17.017 -7.141 1.00244.10 ATOM 159 NH1 ARG A 21 -77.184 -18.315 -7.179 1.00244.84 ATOM 160 NH2 ARG A 21 -75.944 -16.524 -7.883 1.00248.69 ATOM 161 N HIS A 22 -78.483 -11.769 -5.626 1.00281.72 ATOM 162 CA HIS A 22 -77.451 -10.926 -5.033 1.00286.10 ATOM 163 C HIS A 22 -78.068 -9.793 -4.225 1.00284.16 ATOM 164 O HIS A 22 -77.560 -9.432 -3.157 1.00290.29 ATOM 165 CB HIS A 22 -76.538 -10.379 -6.129 1.00294.85 ATOM 166 CG HIS A 22 -76.001 -9.011 -5.846 1.00293.15 ATOM 167 ND1 HIS A 22 -75.164 -8.742 -4.785 1.00294.54 ATOM 168 CD2 HIS A 22 -76.180 -7.834 -6.492 1.00292.76 ATOM 169 CE1 HIS A 22 -74.852 -7.458 -4.788 1.00293.17 ATOM 170 NE2 HIS A 22 -75.455 -6.885 -5.814 1.00293.87 ATOM 171 N ARG A 23 -79.164 -9.216 -4.724 1.00254.17 ATOM 172 CA ARG A 23 -79.875 -8.195 -3.962 1.00248.40 ATOM 173 C ARG A 23 -80.470 -8.777 -2.686 1.00248.14 ATOM 174 O ARG A 23 -80.495 -8.111 -1.644 1.00253.35 ATOM 175 CB ARG A 23 -80.963 -7.557 -4.828 1.00250.09 ATOM 176 CG ARG A 23 -81.441 -6.210 -4.321 1.00238.44 ATOM 177 CD ARG A 23 -82.376 -5.541 -5.312 1.00238.02 ATOM 178 NE ARG A 23 -82.521 -4.116 -5.038 1.00242.44 ATOM 179 CZ ARG A 23 -83.420 -3.599 -4.211 1.00235.22 ATOM 180 NH1 ARG A 23 -84.280 -4.364 -3.559 1.00229.92 ATOM 181 NH2 ARG A 23 -83.457 -2.282 -4.035 1.00234.92 ATOM 182 N ARG A 24 -80.960 -10.019 -2.749 1.00267.43 ATOM 183 CA ARG A 24 -81.468 -10.674 -1.547 1.00276.46 ATOM 184 C ARG A 24 -80.365 -10.855 -0.512 1.00274.76 ATOM 185 O ARG A 24 -80.593 -10.673 0.690 1.00279.91 ATOM 186 CB ARG A 24 -82.088 -12.028 -1.898 1.00280.36 ATOM 187 CG ARG A 24 -83.122 -11.997 -3.010 1.00261.03 ATOM 188 CD ARG A 24 -84.331 -11.158 -2.648 1.00251.87 ATOM 189 NE ARG A 24 -85.205 -11.832 -1.696 1.00270.12 ATOM 190 CZ ARG A 24 -86.362 -11.345 -1.270 1.00273.53 ATOM 191 NH1 ARG A 24 -86.814 -10.174 -1.688 1.00268.91 ATOM 192 NH2 ARG A 24 -87.084 -12.050 -0.404 1.00277.11 ATOM 193 N TYR A 25 -79.164 -11.228 -0.961 1.00247.95 ATOM 194 CA TYR A 25 -78.059 -11.462 -0.036 1.00228.72 ATOM 195 C TYR A 25 -77.612 -10.177 0.652 1.00228.66 ATOM 196 O TYR A 25 -77.330 -10.180 1.856 1.00227.64 ATOM 197 CB TYR A 25 -76.885 -12.104 -0.776 1.00214.60 ATOM 198 CG TYR A 25 -76.903 -13.616 -0.787 1.00208.97 ATOM 199 CD1 TYR A 25 -77.510 -14.332 0.236 1.00209.01 ATOM 200 CD2 TYR A 25 -76.306 -14.327 -1.818 1.00217.39 ATOM 201 CE1 TYR A 25 -77.521 -15.716 0.232 1.00205.59 ATOM 202 CE2 TYR A 25 -76.313 -15.710 -1.832 1.00213.79 ATOM 203 CZ TYR A 25 -76.922 -16.399 -0.806 1.00207.15 ATOM 204 OH TYR A 25 -76.929 -17.775 -0.821 1.00207.78 ATOM 205 N LYS A 26 -77.540 -9.067 -0.088 1.00227.40 ATOM 206 CA LYS A 26 -76.917 -7.856 0.429 1.00235.34 ATOM 207 C LYS A 26 -77.865 -6.688 0.653 1.00240.79 ATOM 208 O LYS A 26 -77.544 -5.810 1.459 1.00230.81 ATOM 209 CB LYS A 26 -75.796 -7.391 -0.512 1.00227.72 ATOM 210 CG LYS A 26 -74.469 -8.080 -0.273 1.00214.04 ATOM 211 CD LYS A 26 -73.458 -7.695 -1.332 1.00218.12 ATOM 212 CE LYS A 26 -72.836 -8.936 -1.931 1.00222.03 ATOM 213 NZ LYS A 26 -73.899 -9.909 -2.295 1.00224.16 ATOM 214 N HIS A 27 -79.006 -6.638 -0.030 1.00249.28 ATOM 215 CA HIS A 27 -79.868 -5.465 0.055 1.00247.86 ATOM 216 C HIS A 27 -81.218 -5.755 0.690 1.00249.30 ATOM 217 O HIS A 27 -81.590 -5.091 1.666 1.00241.21 ATOM 218 CB HIS A 27 -80.057 -4.857 -1.343 1.00241.88 ATOM 219 CG HIS A 27 -78.772 -4.471 -2.005 1.00245.38 ATOM 220 ND1 HIS A 27 -78.078 -3.328 -1.672 1.00256.01 ATOM 221 CD2 HIS A 27 -78.046 -5.083 -2.971 1.00246.65 ATOM 222 CE1 HIS A 27 -76.983 -3.250 -2.407 1.00258.29 ATOM 223 NE2 HIS A 27 -76.941 -4.301 -3.204 1.00256.56 ATOM 224 N THR A 28 -81.975 -6.720 0.163 1.00263.53 ATOM 225 CA THR A 28 -83.301 -6.984 0.713 1.00265.00 ATOM 226 C THR A 28 -83.213 -7.525 2.135 1.00259.57 ATOM 227 O THR A 28 -83.974 -7.100 3.012 1.00257.30 ATOM 228 CB THR A 28 -84.067 -7.958 -0.181 1.00269.80 ATOM 229 OG1 THR A 28 -83.709 -9.304 0.155 1.00267.82 ATOM 230 CG2 THR A 28 -83.747 -7.700 -1.648 1.00256.72 TER