cmd.read_pdbstr("""\ ATOM 1 N MET D 1 7.293 -0.667 -7.469 1.00 -1.00 \ ATOM 2 CA MET D 1 8.510 -0.028 -7.020 1.00 -1.00 \ ATOM 3 C MET D 1 8.232 1.288 -6.367 1.00 -1.00 \ ATOM 4 O MET D 1 7.574 1.385 -5.345 1.00 -1.00 \ ATOM 5 CB MET D 1 9.569 0.136 -8.116 1.00 -1.00 \ ATOM 6 N VAL D 2 8.757 2.277 -6.960 1.00 0.49 \ ATOM 7 CA VAL D 2 8.636 3.526 -6.408 1.00 0.49 \ ATOM 8 C VAL D 2 9.223 3.581 -5.040 1.00 0.49 \ ATOM 9 O VAL D 2 8.669 3.056 -4.100 1.00 0.49 \ ATOM 10 CB VAL D 2 7.269 4.086 -6.503 1.00 0.49 \ ATOM 11 CG1 VAL D 2 7.410 5.593 -6.388 1.00 0.49 \ ATOM 12 CG2 VAL D 2 6.752 3.728 -7.895 1.00 0.49 \ ATOM 13 N SER D 3 10.347 4.295 -4.947 1.00 0.49 \ ATOM 14 CA SER D 3 10.993 4.521 -3.685 1.00 0.49 \ ATOM 15 C SER D 3 10.281 5.593 -2.874 1.00 0.49 \ ATOM 16 O SER D 3 9.506 6.383 -3.407 1.00 0.49 \ ATOM 17 CB SER D 3 12.426 4.936 -3.951 1.00 0.49 \ ATOM 18 OG SER D 3 12.477 6.248 -4.517 1.00 0.49 \ ATOM 19 N LYS D 4 10.570 5.662 -1.569 1.00 -1.97 \ ATOM 20 CA LYS D 4 10.019 6.711 -0.728 1.00 -1.97 \ ATOM 21 C LYS D 4 10.332 8.079 -1.293 1.00 -1.97 \ ATOM 22 O LYS D 4 9.483 9.017 -1.334 1.00 -1.97 \ ATOM 23 CB LYS D 4 10.510 6.680 0.703 1.00 -1.97 \ ATOM 24 CG LYS D 4 9.993 5.510 1.497 1.00 -1.97 \ ATOM 25 CD LYS D 4 10.314 5.646 3.002 1.00 -1.97 \ ATOM 26 CE LYS D 4 9.866 4.446 3.826 1.00 -1.97 \ ATOM 27 NZ LYS D 4 10.003 4.725 5.266 1.00 -1.97 \ ATOM 28 N LEU D 5 11.588 8.273 -1.717 1.00 0.49 \ ATOM 29 CA LEU D 5 11.975 9.576 -2.200 1.00 0.49 \ ATOM 30 C LEU D 5 11.288 9.907 -3.515 1.00 0.49 \ ATOM 31 O LEU D 5 10.787 11.025 -3.706 1.00 0.49 \ ATOM 32 CB LEU D 5 13.531 9.668 -2.307 1.00 0.49 \ ATOM 33 CG LEU D 5 14.059 10.978 -2.889 1.00 0.49 \ ATOM 34 CD1 LEU D 5 13.732 12.210 -2.009 1.00 0.49 \ ATOM 35 CD2 LEU D 5 15.566 10.844 -2.985 1.00 0.49 \ ATOM 36 N SER D 6 11.247 8.933 -4.442 1.00 0.49 \ ATOM 37 CA SER D 6 10.559 9.190 -5.708 1.00 0.49 \ ATOM 38 C SER D 6 9.088 9.523 -5.492 1.00 0.49 \ ATOM 39 O SER D 6 8.548 10.432 -6.132 1.00 0.49 \ ATOM 40 CB SER D 6 10.701 7.967 -6.580 1.00 0.49 \ ATOM 41 OG SER D 6 9.768 8.023 -7.609 1.00 0.49 \ ATOM 42 N GLN D 7 8.416 8.813 -4.611 1.00 0.49 \ ATOM 43 CA GLN D 7 7.003 9.033 -4.363 1.00 0.49 \ ATOM 44 C GLN D 7 6.775 10.439 -3.795 1.00 0.49 \ ATOM 45 O GLN D 7 5.864 11.183 -4.193 1.00 0.49 \ ATOM 46 CB GLN D 7 6.486 7.965 -3.378 1.00 0.49 \ ATOM 47 CG GLN D 7 4.957 8.049 -3.222 1.00 0.49 \ ATOM 48 CD GLN D 7 4.293 7.362 -4.406 1.00 0.49 \ ATOM 49 OE1 GLN D 7 4.383 6.098 -4.596 1.00 0.49 \ ATOM 50 NE2 GLN D 7 3.722 8.183 -5.275 1.00 0.49 \ ATOM 51 N LEU D 8 7.637 10.855 -2.856 1.00 0.49 \ ATOM 52 CA LEU D 8 7.577 12.165 -2.235 1.00 0.49 \ ATOM 53 C LEU D 8 7.762 13.229 -3.293 1.00 0.49 \ ATOM 54 O LEU D 8 7.034 14.231 -3.352 1.00 0.49 \ ATOM 55 CB LEU D 8 8.663 12.244 -1.112 1.00 0.49 \ ATOM 56 CG LEU D 8 8.774 13.564 -0.361 1.00 0.49 \ ATOM 57 CD1 LEU D 8 7.502 13.839 0.407 1.00 0.49 \ ATOM 58 CD2 LEU D 8 9.893 13.466 0.671 1.00 0.49 \ ATOM 59 N GLN D 9 8.753 13.029 -4.158 1.00 0.49 \ ATOM 60 CA GLN D 9 9.020 14.022 -5.196 1.00 0.49 \ ATOM 61 C GLN D 9 7.795 14.158 -6.152 1.00 0.49 \ ATOM 62 O GLN D 9 7.368 15.283 -6.483 1.00 0.49 \ ATOM 63 CB GLN D 9 10.255 13.619 -6.020 1.00 0.49 \ ATOM 64 CG GLN D 9 11.594 13.779 -5.276 1.00 0.49 \ ATOM 65 CD GLN D 9 12.731 13.026 -5.949 1.00 0.49 \ ATOM 66 OE1 GLN D 9 12.499 12.027 -6.648 1.00 0.49 \ ATOM 67 NE2 GLN D 9 13.987 13.471 -5.718 1.00 0.49 \ ATOM 68 N THR D 10 7.265 13.013 -6.627 1.00 0.49 \ ATOM 69 CA THR D 10 6.117 13.011 -7.545 1.00 0.49 \ ATOM 70 C THR D 10 4.897 13.725 -6.930 1.00 0.49 \ ATOM 71 O THR D 10 4.275 14.616 -7.539 1.00 0.49 \ ATOM 72 CB THR D 10 5.765 11.579 -7.926 1.00 0.49 \ ATOM 73 OG1 THR D 10 6.843 11.042 -8.628 1.00 0.49 \ ATOM 74 CG2 THR D 10 4.491 11.507 -8.776 1.00 0.49 \ ATOM 75 N GLU D 11 4.571 13.350 -5.689 1.00 0.49 \ ATOM 76 CA GLU D 11 3.442 13.970 -4.986 1.00 0.49 \ ATOM 77 C GLU D 11 3.643 15.462 -4.704 1.00 0.49 \ ATOM 78 O GLU D 11 2.681 16.234 -4.765 1.00 0.49 \ ATOM 79 CB GLU D 11 3.207 13.219 -3.675 1.00 0.49 \ ATOM 80 CG GLU D 11 2.699 11.806 -3.953 1.00 0.49 \ ATOM 81 CD GLU D 11 2.385 10.999 -2.712 1.00 0.49 \ ATOM 82 OE1 GLU D 11 2.934 11.190 -1.671 1.00 0.49 \ ATOM 83 OE2 GLU D 11 1.349 10.209 -2.839 1.00 0.49 \ ATOM 84 N MSE D 12 4.877 15.919 -4.383 1.00 -1.96 \ ATOM 85 CA MSE D 12 5.070 17.317 -4.128 1.00 -1.96 \ ATOM 86 C MSE D 12 5.055 18.161 -5.421 1.00 -1.96 \ ATOM 87 O MSE D 12 4.575 19.280 -5.389 1.00 -1.96 \ ATOM 88 CB MSE D 12 6.328 17.619 -3.245 1.00 -1.96 \ ATOM 89 CG MSE D 12 6.199 17.082 -1.795 1.00 -1.96 \ ATOM 90 SE MSE D 12 4.723 17.740 -0.883 1.00 -1.96 \ ATOM 91 CE MSE D 12 3.527 16.410 -1.275 1.00 -1.96 \ ATOM 92 N LEU D 13 5.467 17.591 -6.560 1.00 0.49 \ ATOM 93 CA LEU D 13 5.305 18.323 -7.813 1.00 0.49 \ ATOM 94 C LEU D 13 3.792 18.504 -8.085 1.00 0.49 \ ATOM 95 O LEU D 13 3.342 19.603 -8.441 1.00 0.49 \ ATOM 96 CB LEU D 13 5.994 17.601 -8.982 1.00 0.49 \ ATOM 97 CG LEU D 13 7.498 17.663 -8.884 1.00 0.49 \ ATOM 98 CD1 LEU D 13 8.122 16.682 -9.894 1.00 0.49 \ ATOM 99 CD2 LEU D 13 7.987 19.089 -9.117 1.00 0.49 \ ATOM 100 N ALA D 14 3.014 17.428 -7.872 1.00 -1.96 \ ATOM 101 CA ALA D 14 1.575 17.567 -8.030 1.00 -1.96 \ ATOM 102 C ALA D 14 0.987 18.580 -7.106 1.00 -1.96 \ ATOM 103 O ALA D 14 0.104 19.388 -7.488 1.00 -1.96 \ ATOM 104 CB ALA D 14 0.858 16.259 -7.828 1.00 -1.96 \ ATOM 105 N ALA D 15 1.423 18.562 -5.829 1.00 0.49 \ ATOM 106 CA ALA D 15 0.873 19.507 -4.858 1.00 0.49 \ ATOM 107 C ALA D 15 1.215 20.948 -5.234 1.00 0.49 \ ATOM 108 O ALA D 15 0.398 21.888 -5.023 1.00 0.49 \ ATOM 109 CB ALA D 15 1.328 19.124 -3.446 1.00 0.49 \ ATOM 110 N LEU D 16 2.428 21.155 -5.756 1.00 0.49 \ ATOM 111 CA LEU D 16 2.816 22.503 -6.152 1.00 0.49 \ ATOM 112 C LEU D 16 1.916 23.015 -7.277 1.00 0.49 \ ATOM 113 O LEU D 16 1.400 24.137 -7.208 1.00 0.49 \ ATOM 114 CB LEU D 16 4.274 22.562 -6.619 1.00 0.49 \ ATOM 115 CG LEU D 16 5.320 22.473 -5.494 1.00 0.49 \ ATOM 116 CD1 LEU D 16 6.707 22.307 -6.128 1.00 0.49 \ ATOM 117 CD2 LEU D 16 5.221 23.711 -4.624 1.00 0.49 \ ATOM 118 N LEU D 17 1.659 22.140 -8.275 1.00 0.49 \ ATOM 119 CA LEU D 17 0.731 22.537 -9.366 1.00 0.49 \ ATOM 120 C LEU D 17 -0.662 22.786 -8.850 1.00 0.49 \ ATOM 121 O LEU D 17 -1.302 23.793 -9.199 1.00 0.49 \ ATOM 122 CB LEU D 17 0.702 21.555 -10.557 1.00 0.49 \ ATOM 123 CG LEU D 17 2.086 21.472 -11.247 1.00 0.49 \ ATOM 124 CD1 LEU D 17 2.244 20.274 -12.217 1.00 0.49 \ ATOM 125 CD2 LEU D 17 2.482 22.814 -11.893 1.00 0.49 \ ATOM 126 N GLU D 18 -1.128 21.894 -7.988 1.00 0.49 \ ATOM 127 CA GLU D 18 -2.468 22.057 -7.413 1.00 0.49 \ ATOM 128 C GLU D 18 -2.611 23.367 -6.639 1.00 0.49 \ ATOM 129 O GLU D 18 -3.678 24.037 -6.634 1.00 0.49 \ ATOM 130 CB GLU D 18 -2.764 20.918 -6.467 1.00 0.49 \ ATOM 131 N SER D 19 -1.520 23.784 -5.994 1.00 0.49 \ ATOM 132 CA SER D 19 -1.521 25.019 -5.177 1.00 0.49 \ ATOM 133 C SER D 19 -1.519 26.281 -6.033 1.00 0.49 \ ATOM 134 O SER D 19 -1.674 27.354 -5.482 1.00 0.49 \ ATOM 135 CB SER D 19 -0.322 25.054 -4.214 1.00 0.49 \ ATOM 136 OG SER D 19 0.884 25.405 -4.901 1.00 0.49 \ ATOM 137 N GLY D 20 -1.287 26.167 -7.363 1.00 0.49 \ ATOM 138 CA GLY D 20 -1.355 27.341 -8.240 1.00 0.49 \ ATOM 139 C GLY D 20 -0.027 27.774 -8.838 1.00 0.49 \ ATOM 140 O GLY D 20 0.028 28.718 -9.649 1.00 0.49 \ ATOM 141 N LEU D 21 1.042 27.046 -8.532 1.00 0.49 \ ATOM 142 CA LEU D 21 2.346 27.412 -9.109 1.00 0.49 \ ATOM 143 C LEU D 21 2.289 27.208 -10.620 1.00 0.49 \ ATOM 144 O LEU D 21 1.888 26.185 -11.096 1.00 0.49 \ ATOM 145 CB LEU D 21 3.461 26.532 -8.496 1.00 0.49 \ ATOM 146 CG LEU D 21 4.861 26.817 -8.988 1.00 0.49 \ ATOM 147 CD1 LEU D 21 5.303 28.241 -8.639 1.00 0.49 \ ATOM 148 CD2 LEU D 21 5.859 25.730 -8.480 1.00 0.49 \ ATOM 149 N SER D 22 2.720 28.179 -11.365 1.00 -1.97 \ ATOM 150 CA SER D 22 2.700 28.076 -12.787 1.00 -1.97 \ ATOM 151 C SER D 22 3.600 26.980 -13.307 1.00 -1.97 \ ATOM 152 O SER D 22 4.685 26.739 -12.812 1.00 -1.97 \ ATOM 153 CB SER D 22 3.186 29.388 -13.313 1.00 -1.97 \ ATOM 154 OG SER D 22 3.388 29.273 -14.699 1.00 -1.97 \ ATOM 155 N LYS D 23 3.157 26.292 -14.350 1.00 0.49 \ ATOM 156 CA LYS D 23 3.980 25.285 -15.004 1.00 0.49 \ ATOM 157 C LYS D 23 5.288 25.908 -15.443 1.00 0.49 \ ATOM 158 O LYS D 23 6.310 25.224 -15.545 1.00 0.49 \ ATOM 159 CB LYS D 23 3.289 24.684 -16.215 1.00 0.49 \ ATOM 160 CG LYS D 23 2.185 23.739 -15.856 1.00 0.49 \ ATOM 161 CD LYS D 23 1.651 22.909 -17.011 1.00 0.49 \ ATOM 162 CE LYS D 23 0.694 21.846 -16.533 1.00 0.49 \ ATOM 163 NZ LYS D 23 -0.028 21.187 -17.632 1.00 0.49 \ ATOM 164 N GLU D 24 5.238 27.204 -15.743 1.00 0.49 \ ATOM 165 CA GLU D 24 6.428 27.896 -16.152 1.00 0.49 \ ATOM 166 C GLU D 24 7.576 27.703 -15.172 1.00 0.49 \ ATOM 167 O GLU D 24 8.772 27.629 -15.549 1.00 0.49 \ ATOM 168 CB GLU D 24 6.117 29.384 -16.377 1.00 0.49 \ ATOM 169 CG GLU D 24 5.325 29.617 -17.684 1.00 0.49 \ ATOM 170 CD GLU D 24 5.948 28.955 -18.884 1.00 0.49 \ ATOM 171 OE1 GLU D 24 6.996 29.322 -19.402 1.00 0.49 \ ATOM 172 OE2 GLU D 24 5.275 27.907 -19.278 1.00 0.49 \ ATOM 173 N ALA D 25 7.238 27.639 -13.858 1.00 -1.97 \ ATOM 174 CA ALA D 25 8.273 27.393 -12.847 1.00 -1.97 \ ATOM 175 C ALA D 25 8.982 26.082 -13.067 1.00 -1.97 \ ATOM 176 O ALA D 25 10.214 25.972 -12.885 1.00 -1.97 \ ATOM 177 CB ALA D 25 7.687 27.433 -11.428 1.00 -1.97 \ ATOM 178 N LEU D 26 8.204 25.034 -13.405 1.00 0.49 \ ATOM 179 CA LEU D 26 8.847 23.749 -13.591 1.00 0.49 \ ATOM 180 C LEU D 26 9.605 23.767 -14.914 1.00 0.49 \ ATOM 181 O LEU D 26 10.641 23.131 -15.043 1.00 0.49 \ ATOM 182 CB LEU D 26 7.830 22.549 -13.613 1.00 0.49 \ ATOM 183 CG LEU D 26 6.772 22.410 -12.526 1.00 0.49 \ ATOM 184 CD1 LEU D 26 6.327 20.965 -12.380 1.00 0.49 \ ATOM 185 CD2 LEU D 26 7.106 23.062 -11.228 1.00 0.49 \ ATOM 186 N ILE D 27 9.012 24.446 -15.918 1.00 0.49 \ ATOM 187 CA ILE D 27 9.657 24.494 -17.205 1.00 0.49 \ ATOM 188 C ILE D 27 11.033 25.185 -17.128 1.00 0.49 \ ATOM 189 O ILE D 27 12.009 24.715 -17.740 1.00 0.49 \ ATOM 190 CB ILE D 27 8.720 25.054 -18.284 1.00 0.49 \ ATOM 191 CG1 ILE D 27 7.613 24.006 -18.566 1.00 0.49 \ ATOM 192 CG2 ILE D 27 9.492 25.247 -19.596 1.00 0.49 \ ATOM 193 CD1 ILE D 27 6.701 24.475 -19.666 1.00 0.49 \ ATOM 194 N GLN D 28 11.130 26.208 -16.259 1.00 -1.97 \ ATOM 195 CA GLN D 28 12.364 26.946 -16.024 1.00 -1.97 \ ATOM 196 C GLN D 28 13.426 26.043 -15.436 1.00 -1.97 \ ATOM 197 O GLN D 28 14.599 26.076 -15.804 1.00 -1.97 \ ATOM 198 CB GLN D 28 12.058 28.199 -15.206 1.00 -1.97 \ ATOM 199 CG GLN D 28 13.252 28.829 -14.530 1.00 -1.97 \ ATOM 200 CD GLN D 28 12.733 29.918 -13.657 1.00 -1.97 \ ATOM 201 OE1 GLN D 28 11.621 30.383 -13.897 1.00 -1.97 \ ATOM 202 NE2 GLN D 28 13.475 30.267 -12.614 1.00 -1.97 \ ATOM 203 N ALA D 29 13.023 25.147 -14.560 1.00 0.49 \ ATOM 204 CA ALA D 29 13.990 24.175 -14.046 1.00 0.49 \ ATOM 205 C ALA D 29 14.512 23.195 -15.106 1.00 0.49 \ ATOM 206 O ALA D 29 15.614 22.736 -15.001 1.00 0.49 \ ATOM 207 CB ALA D 29 13.398 23.439 -12.862 1.00 0.49 \ ATOM 208 N LEU D 30 13.779 22.916 -16.193 1.00 0.49 \ ATOM 209 CA LEU D 30 14.282 22.040 -17.255 1.00 0.49 \ ATOM 210 C LEU D 30 15.474 22.649 -17.917 1.00 0.49 \ ATOM 211 O LEU D 30 15.533 23.862 -18.013 1.00 0.49 \ ATOM 212 CB LEU D 30 13.262 21.755 -18.374 1.00 0.49 \ ATOM 213 CG LEU D 30 12.213 20.734 -18.020 1.00 0.49 \ ATOM 214 CD1 LEU D 30 11.092 20.768 -19.067 1.00 0.49 \ ATOM 215 CD2 LEU D 30 12.799 19.337 -17.943 1.00 0.49 \ """, "e1g2yD1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e1g2yD1_csv", state=0, origin=1) cmd.zoom("e1g2yD1_csv", animate=-1)