cmd.read_pdbstr("""\ ATOM 9 N VAL A 2 18.186 -6.874 -6.495 1.00 0.49 \ ATOM 10 CA VAL A 2 16.874 -6.742 -5.880 1.00 0.49 \ ATOM 11 C VAL A 2 15.834 -7.282 -6.850 1.00 0.49 \ ATOM 12 O VAL A 2 15.898 -7.003 -8.045 1.00 0.49 \ ATOM 13 CB VAL A 2 16.571 -5.275 -5.561 1.00 0.49 \ ATOM 14 CG1 VAL A 2 15.184 -5.142 -4.951 1.00 0.49 \ ATOM 15 CG2 VAL A 2 17.623 -4.739 -4.609 1.00 0.49 \ ATOM 16 N SER A 3 14.879 -8.056 -6.344 1.00 0.49 \ ATOM 17 CA SER A 3 13.867 -8.626 -7.221 1.00 0.49 \ ATOM 18 C SER A 3 12.977 -7.538 -7.802 1.00 0.49 \ ATOM 19 O SER A 3 12.768 -6.486 -7.186 1.00 0.49 \ ATOM 20 CB SER A 3 13.006 -9.643 -6.480 1.00 0.49 \ ATOM 21 OG SER A 3 12.072 -9.001 -5.640 1.00 0.49 \ ATOM 22 N LYS A 4 12.464 -7.798 -9.000 1.00 -1.97 \ ATOM 23 CA LYS A 4 11.581 -6.858 -9.678 1.00 -1.97 \ ATOM 24 C LYS A 4 10.322 -6.653 -8.833 1.00 -1.97 \ ATOM 25 O LYS A 4 9.788 -5.548 -8.763 1.00 -1.97 \ ATOM 26 CB LYS A 4 11.185 -7.407 -11.051 1.00 -1.97 \ ATOM 27 CG LYS A 4 12.323 -7.525 -12.057 1.00 -1.97 \ ATOM 28 CD LYS A 4 12.923 -6.171 -12.394 1.00 -1.97 \ ATOM 29 CE LYS A 4 13.647 -6.200 -13.737 1.00 -1.97 \ ATOM 30 NZ LYS A 4 14.655 -7.296 -13.813 1.00 -1.97 \ ATOM 31 N LEU A 5 9.848 -7.724 -8.196 1.00 0.49 \ ATOM 32 CA LEU A 5 8.651 -7.640 -7.361 1.00 0.49 \ ATOM 33 C LEU A 5 8.873 -6.692 -6.184 1.00 0.49 \ ATOM 34 O LEU A 5 7.996 -5.892 -5.848 1.00 0.49 \ ATOM 35 CB LEU A 5 8.268 -9.017 -6.817 1.00 0.49 \ ATOM 36 CG LEU A 5 6.776 -9.372 -6.763 1.00 0.49 \ ATOM 37 CD1 LEU A 5 6.573 -10.529 -5.799 1.00 0.49 \ ATOM 38 CD2 LEU A 5 5.939 -8.187 -6.322 1.00 0.49 \ ATOM 39 N SER A 6 10.042 -6.789 -5.552 1.00 0.49 \ ATOM 40 CA SER A 6 10.355 -5.936 -4.412 1.00 0.49 \ ATOM 41 C SER A 6 10.391 -4.473 -4.828 1.00 0.49 \ ATOM 42 O SER A 6 9.811 -3.608 -4.164 1.00 0.49 \ ATOM 43 CB SER A 6 11.706 -6.331 -3.807 1.00 0.49 \ ATOM 44 OG SER A 6 12.040 -5.459 -2.746 1.00 0.49 \ ATOM 45 N GLN A 7 11.078 -4.200 -5.930 1.00 0.49 \ ATOM 46 CA GLN A 7 11.183 -2.840 -6.437 1.00 0.49 \ ATOM 47 C GLN A 7 9.796 -2.294 -6.765 1.00 0.49 \ ATOM 48 O GLN A 7 9.471 -1.151 -6.442 1.00 0.49 \ ATOM 49 CB GLN A 7 12.058 -2.820 -7.688 1.00 0.49 \ ATOM 50 CG GLN A 7 12.177 -1.460 -8.355 1.00 0.49 \ ATOM 51 CD GLN A 7 13.017 -1.515 -9.617 1.00 0.49 \ ATOM 52 OE1 GLN A 7 13.077 -0.550 -10.380 1.00 0.49 \ ATOM 53 NE2 GLN A 7 13.679 -2.646 -9.837 1.00 0.49 \ ATOM 54 N LEU A 8 8.977 -3.116 -7.411 1.00 0.49 \ ATOM 55 CA LEU A 8 7.630 -2.699 -7.779 1.00 0.49 \ ATOM 56 C LEU A 8 6.773 -2.403 -6.549 1.00 0.49 \ ATOM 57 O LEU A 8 5.993 -1.451 -6.541 1.00 0.49 \ ATOM 58 CB LEU A 8 6.971 -3.781 -8.635 1.00 0.49 \ ATOM 59 CG LEU A 8 5.557 -3.494 -9.166 1.00 0.49 \ ATOM 60 CD1 LEU A 8 5.521 -2.199 -9.978 1.00 0.49 \ ATOM 61 CD2 LEU A 8 5.127 -4.670 -10.022 1.00 0.49 \ ATOM 62 N GLN A 9 6.909 -3.223 -5.513 1.00 0.49 \ ATOM 63 CA GLN A 9 6.144 -3.020 -4.290 1.00 0.49 \ ATOM 64 C GLN A 9 6.548 -1.721 -3.613 1.00 0.49 \ ATOM 65 O GLN A 9 5.700 -0.965 -3.139 1.00 0.49 \ ATOM 66 CB GLN A 9 6.356 -4.193 -3.334 1.00 0.49 \ ATOM 67 CG GLN A 9 5.843 -5.515 -3.863 1.00 0.49 \ ATOM 68 CD GLN A 9 6.260 -6.672 -2.990 1.00 0.49 \ ATOM 69 OE1 GLN A 9 7.439 -6.830 -2.696 1.00 0.49 \ ATOM 70 NE2 GLN A 9 5.298 -7.495 -2.579 1.00 0.49 \ ATOM 71 N THR A 10 7.851 -1.461 -3.572 1.00 0.49 \ ATOM 72 CA THR A 10 8.366 -0.241 -2.951 1.00 0.49 \ ATOM 73 C THR A 10 7.892 0.993 -3.729 1.00 0.49 \ ATOM 74 O THR A 10 7.472 1.999 -3.147 1.00 0.49 \ ATOM 75 CB THR A 10 9.915 -0.270 -2.901 1.00 0.49 \ ATOM 76 OG1 THR A 10 10.344 -1.403 -2.131 1.00 0.49 \ ATOM 77 CG2 THR A 10 10.465 1.008 -2.270 1.00 0.49 \ ATOM 78 N GLU A 11 7.935 0.892 -5.052 1.00 0.49 \ ATOM 79 CA GLU A 11 7.515 1.971 -5.937 1.00 0.49 \ ATOM 80 C GLU A 11 6.014 2.242 -5.794 1.00 0.49 \ ATOM 81 O GLU A 11 5.573 3.395 -5.781 1.00 0.49 \ ATOM 82 CB GLU A 11 7.818 1.581 -7.384 1.00 0.49 \ ATOM 83 CG GLU A 11 7.901 2.734 -8.359 1.00 0.49 \ ATOM 84 CD GLU A 11 9.131 3.583 -8.110 1.00 0.49 \ ATOM 85 OE1 GLU A 11 9.022 4.620 -7.432 1.00 0.49 \ ATOM 86 OE2 GLU A 11 10.218 3.192 -8.582 1.00 0.49 \ ATOM 87 N LEU A 12 5.233 1.171 -5.713 1.00 0.49 \ ATOM 88 CA LEU A 12 3.780 1.268 -5.585 1.00 0.49 \ ATOM 89 C LEU A 12 3.381 1.903 -4.250 1.00 0.49 \ ATOM 90 O LEU A 12 2.543 2.811 -4.212 1.00 0.49 \ ATOM 91 CB LEU A 12 3.164 -0.127 -5.703 1.00 0.49 \ ATOM 92 CG LEU A 12 2.228 -0.433 -6.873 1.00 0.49 \ ATOM 93 CD1 LEU A 12 2.857 0.037 -8.164 1.00 0.49 \ ATOM 94 CD2 LEU A 12 1.939 -1.933 -6.927 1.00 0.49 \ ATOM 95 N MSE A 13 3.960 1.418 -3.157 1.00 -1.96 \ ATOM 96 CA MSE A 13 3.642 1.979 -1.853 1.00 -1.96 \ ATOM 97 C MSE A 13 3.956 3.465 -1.853 1.00 -1.96 \ ATOM 98 O MSE A 13 3.148 4.275 -1.431 1.00 -1.96 \ ATOM 99 CB MSE A 13 4.460 1.323 -0.761 1.00 -1.96 \ ATOM 100 CG MSE A 13 4.099 1.896 0.602 1.00 -1.96 \ ATOM 101 SE MSE A 13 2.224 1.774 1.083 1.00 -1.96 \ ATOM 102 CE MSE A 13 1.965 -0.038 0.549 1.00 -1.96 \ ATOM 103 N ALA A 14 5.155 3.818 -2.306 1.00 -1.96 \ ATOM 104 CA ALA A 14 5.550 5.221 -2.350 1.00 -1.96 \ ATOM 105 C ALA A 14 4.544 6.069 -3.132 1.00 -1.96 \ ATOM 106 O ALA A 14 4.107 7.129 -2.669 1.00 -1.96 \ ATOM 107 CB ALA A 14 6.936 5.354 -2.971 1.00 -1.96 \ ATOM 108 N ALA A 15 4.173 5.604 -4.320 1.00 0.49 \ ATOM 109 CA ALA A 15 3.220 6.330 -5.147 1.00 0.49 \ ATOM 110 C ALA A 15 1.850 6.428 -4.483 1.00 0.49 \ ATOM 111 O ALA A 15 1.191 7.460 -4.561 1.00 0.49 \ ATOM 112 CB ALA A 15 3.100 5.661 -6.512 1.00 0.49 \ ATOM 113 N LEU A 16 1.423 5.358 -3.824 1.00 0.49 \ ATOM 114 CA LEU A 16 0.132 5.361 -3.146 1.00 0.49 \ ATOM 115 C LEU A 16 0.114 6.386 -2.027 1.00 0.49 \ ATOM 116 O LEU A 16 -0.855 7.115 -1.862 1.00 0.49 \ ATOM 117 CB LEU A 16 -0.176 3.983 -2.565 1.00 0.49 \ ATOM 118 CG LEU A 16 -0.804 2.972 -3.521 1.00 0.49 \ ATOM 119 CD1 LEU A 16 -0.927 1.632 -2.816 1.00 0.49 \ ATOM 120 CD2 LEU A 16 -2.174 3.473 -3.961 1.00 0.49 \ ATOM 121 N LEU A 17 1.184 6.440 -1.245 1.00 0.49 \ ATOM 122 CA LEU A 17 1.232 7.407 -0.156 1.00 0.49 \ ATOM 123 C LEU A 17 1.146 8.824 -0.699 1.00 0.49 \ ATOM 124 O LEU A 17 0.389 9.645 -0.181 1.00 0.49 \ ATOM 125 CB LEU A 17 2.521 7.248 0.649 1.00 0.49 \ ATOM 126 CG LEU A 17 2.596 5.987 1.505 1.00 0.49 \ ATOM 127 CD1 LEU A 17 4.029 5.758 1.973 1.00 0.49 \ ATOM 128 CD2 LEU A 17 1.644 6.126 2.681 1.00 0.49 \ ATOM 129 N GLU A 18 1.906 9.109 -1.752 1.00 0.49 \ ATOM 130 CA GLU A 18 1.901 10.446 -2.325 1.00 0.49 \ ATOM 131 C GLU A 18 0.545 10.824 -2.919 1.00 0.49 \ ATOM 132 O GLU A 18 0.223 12.011 -3.021 1.00 0.49 \ ATOM 133 CB GLU A 18 2.988 10.573 -3.390 1.00 0.49 \ ATOM 134 CG GLU A 18 3.503 11.997 -3.577 1.00 0.49 \ ATOM 135 CD GLU A 18 4.241 12.520 -2.352 1.00 0.49 \ ATOM 136 OE1 GLU A 18 4.543 11.719 -1.436 1.00 0.49 \ ATOM 137 OE2 GLU A 18 4.524 13.735 -2.303 1.00 0.49 \ ATOM 138 N SER A 19 -0.251 9.831 -3.307 1.00 0.49 \ ATOM 139 CA SER A 19 -1.571 10.104 -3.880 1.00 0.49 \ ATOM 140 C SER A 19 -2.589 10.433 -2.791 1.00 0.49 \ ATOM 141 O SER A 19 -3.760 10.696 -3.075 1.00 0.49 \ ATOM 142 CB SER A 19 -2.063 8.913 -4.718 1.00 0.49 \ ATOM 143 OG SER A 19 -2.555 7.850 -3.914 1.00 0.49 \ ATOM 144 N GLY A 20 -2.136 10.411 -1.543 1.00 0.49 \ ATOM 145 CA GLY A 20 -3.017 10.728 -0.430 1.00 0.49 \ ATOM 146 C GLY A 20 -3.642 9.550 0.295 1.00 0.49 \ ATOM 147 O GLY A 20 -4.691 9.701 0.931 1.00 0.49 \ ATOM 148 N LEU A 21 -3.007 8.384 0.212 1.00 0.49 \ ATOM 149 CA LEU A 21 -3.502 7.188 0.885 1.00 0.49 \ ATOM 150 C LEU A 21 -3.731 7.509 2.358 1.00 0.49 \ ATOM 151 O LEU A 21 -2.895 8.145 2.985 1.00 0.49 \ ATOM 152 CB LEU A 21 -2.477 6.054 0.762 1.00 0.49 \ ATOM 153 CG LEU A 21 -2.888 4.712 1.371 1.00 0.49 \ ATOM 154 CD1 LEU A 21 -4.060 4.140 0.588 1.00 0.49 \ ATOM 155 CD2 LEU A 21 -1.712 3.747 1.353 1.00 0.49 \ ATOM 156 N SER A 22 -4.852 7.055 2.911 1.00 -1.97 \ ATOM 157 CA SER A 22 -5.164 7.337 4.305 1.00 -1.97 \ ATOM 158 C SER A 22 -4.551 6.359 5.295 1.00 -1.97 \ ATOM 159 O SER A 22 -4.243 5.213 4.950 1.00 -1.97 \ ATOM 160 CB SER A 22 -6.682 7.366 4.517 1.00 -1.97 \ ATOM 161 OG SER A 22 -7.216 6.048 4.581 1.00 -1.97 \ ATOM 162 N LYS A 23 -4.388 6.826 6.533 1.00 0.49 \ ATOM 163 CA LYS A 23 -3.830 6.003 7.589 1.00 0.49 \ ATOM 164 C LYS A 23 -4.820 4.885 7.901 1.00 0.49 \ ATOM 165 O LYS A 23 -4.424 3.802 8.314 1.00 0.49 \ ATOM 166 CB LYS A 23 -3.567 6.828 8.854 1.00 0.49 \ ATOM 167 CG LYS A 23 -4.771 6.963 9.760 1.00 0.49 \ ATOM 168 CD LYS A 23 -4.346 7.314 11.165 1.00 0.49 \ ATOM 169 CE LYS A 23 -4.155 8.799 11.335 1.00 0.49 \ ATOM 170 NZ LYS A 23 -5.469 9.499 11.413 1.00 0.49 \ ATOM 171 N GLU A 24 -6.110 5.148 7.709 1.00 0.49 \ ATOM 172 CA GLU A 24 -7.100 4.112 7.976 1.00 0.49 \ ATOM 173 C GLU A 24 -6.925 2.944 7.010 1.00 0.49 \ ATOM 174 O GLU A 24 -7.081 1.789 7.396 1.00 0.49 \ ATOM 175 CB GLU A 24 -8.518 4.676 7.894 1.00 0.49 \ ATOM 176 CG GLU A 24 -8.950 5.381 9.177 1.00 0.49 \ ATOM 177 CD GLU A 24 -8.132 6.624 9.457 1.00 0.49 \ ATOM 178 OE1 GLU A 24 -7.841 6.894 10.639 1.00 0.49 \ ATOM 179 OE2 GLU A 24 -7.796 7.343 8.491 1.00 0.49 \ ATOM 180 N ALA A 25 -6.585 3.243 5.758 1.00 -1.97 \ ATOM 181 CA ALA A 25 -6.378 2.186 4.775 1.00 -1.97 \ ATOM 182 C ALA A 25 -5.167 1.335 5.164 1.00 -1.97 \ ATOM 183 O ALA A 25 -5.158 0.123 4.957 1.00 -1.97 \ ATOM 184 CB ALA A 25 -6.189 2.791 3.379 1.00 -1.97 \ ATOM 185 N LEU A 26 -4.149 1.968 5.742 1.00 0.49 \ ATOM 186 CA LEU A 26 -2.941 1.264 6.164 1.00 0.49 \ ATOM 187 C LEU A 26 -3.212 0.417 7.409 1.00 0.49 \ ATOM 188 O LEU A 26 -2.738 -0.722 7.525 1.00 0.49 \ ATOM 189 CB LEU A 26 -1.832 2.277 6.458 1.00 0.49 \ ATOM 190 CG LEU A 26 -1.234 2.936 5.221 1.00 0.49 \ ATOM 191 CD1 LEU A 26 -0.370 4.116 5.636 1.00 0.49 \ ATOM 192 CD2 LEU A 26 -0.408 1.916 4.462 1.00 0.49 \ ATOM 193 N ILE A 27 -3.987 0.979 8.332 1.00 0.49 \ ATOM 194 CA ILE A 27 -4.328 0.279 9.561 1.00 0.49 \ ATOM 195 C ILE A 27 -5.133 -0.970 9.233 1.00 0.49 \ ATOM 196 O ILE A 27 -4.908 -2.032 9.813 1.00 0.49 \ ATOM 197 CB ILE A 27 -5.143 1.194 10.501 1.00 0.49 \ ATOM 198 CG1 ILE A 27 -4.257 2.343 10.994 1.00 0.49 \ ATOM 199 CG2 ILE A 27 -5.643 0.412 11.708 1.00 0.49 \ ATOM 200 CD1 ILE A 27 -4.989 3.356 11.835 1.00 0.49 \ ATOM 201 N GLN A 28 -6.071 -0.837 8.303 1.00 -1.97 \ ATOM 202 CA GLN A 28 -6.903 -1.968 7.906 1.00 -1.97 \ ATOM 203 C GLN A 28 -6.026 -3.058 7.292 1.00 -1.97 \ ATOM 204 O GLN A 28 -6.197 -4.241 7.582 1.00 -1.97 \ ATOM 205 CB GLN A 28 -7.963 -1.523 6.899 1.00 -1.97 \ ATOM 206 CG GLN A 28 -8.899 -2.639 6.459 1.00 -1.97 \ ATOM 207 CD GLN A 28 -9.750 -2.240 5.276 1.00 -1.97 \ ATOM 208 OE1 GLN A 28 -10.513 -1.271 5.339 1.00 -1.97 \ ATOM 209 NE2 GLN A 28 -9.626 -2.982 4.184 1.00 -1.97 \ ATOM 210 N ALA A 29 -5.088 -2.660 6.438 1.00 0.49 \ ATOM 211 CA ALA A 29 -4.191 -3.625 5.805 1.00 0.49 \ ATOM 212 C ALA A 29 -3.319 -4.300 6.864 1.00 0.49 \ ATOM 213 O ALA A 29 -3.131 -5.517 6.858 1.00 0.49 \ ATOM 214 CB ALA A 29 -3.312 -2.927 4.768 1.00 0.49 \ ATOM 215 N LEU A 30 -2.786 -3.499 7.781 1.00 0.49 \ ATOM 216 CA LEU A 30 -1.941 -4.022 8.849 1.00 0.49 \ ATOM 217 C LEU A 30 -2.729 -5.015 9.690 1.00 0.49 \ ATOM 218 O LEU A 30 -2.162 -5.918 10.305 1.00 0.49 \ ATOM 219 CB LEU A 30 -1.443 -2.881 9.745 1.00 0.49 \ ATOM 220 CG LEU A 30 -0.459 -3.283 10.842 1.00 0.49 \ ATOM 221 CD1 LEU A 30 0.794 -3.865 10.200 1.00 0.49 \ ATOM 222 CD2 LEU A 30 -0.110 -2.066 11.695 1.00 0.49 \ ATOM 223 N GLY A 31 -4.045 -4.836 9.707 1.00 0.49 \ ATOM 224 CA GLY A 31 -4.902 -5.713 10.474 1.00 0.49 \ ATOM 225 C GLY A 31 -4.813 -7.180 10.094 1.00 0.49 \ ATOM 226 O GLY A 31 -5.158 -8.043 10.901 1.00 0.49 \ ATOM 227 N GLU A 32 -4.360 -7.479 8.878 1.00 -1.00 \ ATOM 228 CA GLU A 32 -4.257 -8.873 8.450 1.00 -1.00 \ ATOM 229 C GLU A 32 -3.282 -9.668 9.313 1.00 -1.00 \ ATOM 230 O GLU A 32 -3.226 -10.894 9.228 1.00 -1.00 \ ATOM 231 CB GLU A 32 -3.813 -8.973 6.991 1.00 -1.00 \ ATOM 232 CG GLU A 32 -4.820 -8.445 5.977 1.00 -1.00 \ ATOM 233 CD GLU A 32 -4.630 -9.058 4.595 1.00 -1.00 \ ATOM 234 OE1 GLU A 32 -5.297 -8.605 3.642 1.00 -1.00 \ ATOM 235 OE2 GLU A 32 -3.833 -10.011 4.464 1.00 -1.00 \ ATOM 236 N TRP A 33 -2.509 -8.978 10.140 1.00 -1.00 \ ATOM 237 CA TRP A 33 -1.554 -9.664 11.001 1.00 -1.00 \ ATOM 238 C TRP A 33 -2.019 -9.656 12.449 1.00 -1.00 \ ATOM 239 O TRP A 33 -3.124 -9.139 12.712 1.00 -1.00 \ ATOM 240 CB TRP A 33 -0.184 -9.002 10.880 1.00 -1.00 \ ATOM 241 CG TRP A 33 0.547 -9.353 9.632 1.00 -1.00 \ ATOM 242 CD1 TRP A 33 1.515 -10.304 9.492 1.00 -1.00 \ ATOM 243 CD2 TRP A 33 0.392 -8.745 8.345 1.00 -1.00 \ ATOM 244 NE1 TRP A 33 1.980 -10.323 8.200 1.00 -1.00 \ ATOM 245 CE2 TRP A 33 1.310 -9.375 7.474 1.00 -1.00 \ ATOM 246 CE3 TRP A 33 -0.435 -7.730 7.842 1.00 -1.00 \ ATOM 247 CZ2 TRP A 33 1.431 -9.015 6.126 1.00 -1.00 \ ATOM 248 CZ3 TRP A 33 -0.315 -7.374 6.497 1.00 -1.00 \ ATOM 249 CH2 TRP A 33 0.612 -8.017 5.660 1.00 -1.00 \ ATOM 250 OXT TRP A 33 -1.274 -10.181 13.298 1.00 -1.00 \ """, "e1jb6A2_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e1jb6A2_csv", state=0, origin=1) cmd.zoom("e1jb6A2_csv", animate=-1)