cmd.read_pdbstr("""\ ATOM 1 CA GLN D 2 110.229 24.729 -11.276 1.00 -1.00 \ ATOM 2 CA GLN D 3 109.271 25.415 -14.893 1.00 -1.00 \ ATOM 3 CA LEU D 4 108.132 28.913 -13.930 1.00 -1.00 \ ATOM 4 CA LYS D 5 111.500 30.172 -12.687 1.00 -1.00 \ ATOM 5 CA THR D 6 113.537 28.672 -15.528 1.00 -1.00 \ ATOM 6 CA LYS D 7 112.765 31.675 -17.732 1.00 -1.00 \ ATOM 7 CA TYR D 8 113.312 34.144 -14.893 1.00 -1.00 \ ATOM 8 CA ASN D 9 116.986 34.427 -15.835 1.00 -1.00 \ ATOM 9 CA ASP D 10 117.006 33.610 -19.551 1.00 -1.00 \ ATOM 10 CA GLN D 11 114.366 35.964 -20.951 1.00 -1.00 \ ATOM 11 CA VAL D 12 113.011 38.042 -18.068 1.00 -1.00 \ ATOM 12 CA ARG D 13 116.300 39.393 -16.715 1.00 -1.00 \ ATOM 13 CA PRO D 14 117.537 39.777 -20.291 1.00 -1.00 \ ATOM 14 CA ALA D 15 114.603 42.002 -21.247 1.00 -1.00 \ ATOM 15 CA LEU D 16 114.776 43.872 -17.938 1.00 -1.00 \ ATOM 16 CA MET D 17 118.392 44.789 -18.686 1.00 -1.00 \ ATOM 17 CA GLN D 18 117.646 46.590 -21.953 1.00 -1.00 \ ATOM 18 CA GLN D 19 114.946 48.760 -20.382 1.00 -1.00 \ ATOM 19 CA PHE D 20 116.848 50.279 -17.460 1.00 -1.00 \ ATOM 20 CA GLY D 21 120.598 50.428 -17.987 1.00 -1.00 \ ATOM 21 CA TYR D 22 122.837 49.132 -20.768 1.00 -1.00 \ ATOM 22 CA SER D 23 126.047 47.317 -19.838 1.00 -1.00 \ ATOM 23 CA SER D 24 126.490 43.617 -20.603 1.00 2.15 \ ATOM 24 CA VAL D 25 124.952 40.152 -20.292 1.00 -1.02 \ ATOM 25 CA MET D 26 126.428 39.995 -16.789 1.00 -0.38 \ ATOM 26 CA ALA D 27 126.268 42.404 -13.847 1.00 -0.46 \ ATOM 27 CA VAL D 28 122.725 41.199 -13.164 1.00 -0.57 \ ATOM 28 CA PRO D 29 120.831 40.365 -9.973 1.00 0.84 \ ATOM 29 CA ARG D 30 122.476 37.066 -9.038 1.00 -1.02 \ ATOM 30 CA ILE D 31 121.029 35.474 -5.901 1.00 1.97 \ ATOM 31 CA GLU D 32 123.962 33.941 -4.028 1.00 -0.84 \ ATOM 32 CA LYS D 33 122.167 32.436 -1.032 1.00 0.14 \ ATOM 33 CA ILE D 34 118.941 32.750 0.957 1.00 2.27 \ ATOM 34 CA VAL D 35 119.096 33.168 4.734 1.00 -0.04 \ ATOM 35 CA VAL D 36 116.245 31.670 6.759 1.00 2.32 \ ATOM 36 CA ASN D 37 116.191 32.005 10.548 1.00 1.14 \ ATOM 37 CA GLU D 38 113.453 30.965 12.975 1.00 -0.09 \ ATOM 38 CA GLY D 39 112.101 32.524 16.154 1.00 0.15 \ ATOM 39 CA LEU D 40 113.378 31.928 19.680 1.00 -0.07 \ ATOM 40 CA GLY D 41 112.505 28.772 21.585 1.00 0.53 \ ATOM 41 CA SER D 42 114.411 28.801 24.868 1.00 -0.62 \ ATOM 42 CA SER D 43 111.669 30.175 27.119 1.00 -0.99 \ ATOM 43 CA LYS D 44 109.101 27.994 25.358 1.00 -0.88 \ ATOM 44 CA GLU D 45 109.730 24.605 26.964 1.00 -0.84 \ ATOM 45 CA ASP D 46 112.419 22.213 28.194 1.00 -0.05 \ ATOM 46 CA SER D 47 114.432 19.988 25.851 1.00 -0.72 \ ATOM 47 CA LYS D 48 111.216 18.931 24.115 1.00 -0.61 \ ATOM 48 CA ALA D 49 111.093 22.290 22.334 1.00 -1.23 \ ATOM 49 CA ILE D 50 114.251 21.611 20.325 1.00 -0.62 \ ATOM 50 CA ASP D 51 113.203 18.245 18.901 1.00 -0.91 \ ATOM 51 CA LYS D 52 109.852 19.769 17.945 1.00 -1.18 \ ATOM 52 CA ALA D 53 111.290 22.512 15.737 1.00 -0.28 \ ATOM 53 CA ALA D 54 113.676 19.981 14.197 1.00 -0.96 \ ATOM 54 CA LYS D 55 110.941 17.962 12.490 1.00 -0.84 \ ATOM 55 CA GLU D 56 108.880 20.959 11.380 1.00 -0.99 \ ATOM 56 CA LEU D 57 111.637 22.740 9.459 1.00 1.73 \ ATOM 57 CA ALA D 58 112.539 19.438 7.797 1.00 -0.58 \ ATOM 58 CA LEU D 59 109.096 19.150 6.204 1.00 -0.89 \ ATOM 59 CA ILE D 60 109.453 22.738 4.996 1.00 2.56 \ ATOM 60 CA THR D 61 112.885 22.594 3.365 1.00 0.76 \ ATOM 61 CA LEU D 62 114.448 19.213 2.582 1.00 0.71 \ ATOM 62 CA GLN D 63 117.299 18.709 5.047 1.00 -0.52 \ ATOM 63 CA LYS D 64 117.622 18.749 8.836 1.00 -0.95 \ ATOM 64 CA PRO D 65 117.761 21.996 10.812 1.00 0.56 \ ATOM 65 CA ILE D 66 120.794 23.521 12.526 1.00 -0.89 \ ATOM 66 CA ILE D 67 121.731 24.146 16.159 1.00 -0.99 \ ATOM 67 CA THR D 68 123.275 27.602 16.546 1.00 -0.62 \ ATOM 68 CA LYS D 69 124.089 29.183 19.906 1.00 -1.01 \ ATOM 69 CA ALA D 70 124.188 32.632 21.503 1.00 0.93 \ ATOM 70 CA LYS D 71 126.822 35.291 20.821 1.00 0.33 \ ATOM 71 CA LYS D 72 128.484 34.611 24.175 1.00 -0.78 \ ATOM 72 CA SER D 73 126.672 37.675 25.519 1.00 0.29 \ ATOM 73 CA ILE D 74 125.737 37.534 29.202 1.00 0.14 \ ATOM 74 CA SER D 75 123.379 40.211 30.523 1.00 -0.11 \ ATOM 75 CA ASN D 76 121.693 40.895 33.863 1.00 -0.46 \ ATOM 76 CA PHE D 77 118.319 39.207 33.383 1.00 2.59 \ ATOM 77 CA LYS D 78 118.119 35.630 32.103 1.00 0.42 \ ATOM 78 CA LEU D 79 120.821 34.217 29.829 1.00 1.06 \ ATOM 79 CA ARG D 80 123.691 31.725 29.752 1.00 0.17 \ ATOM 80 CA GLN D 81 126.592 30.665 27.533 1.00 -0.56 \ ATOM 81 CA GLY D 82 126.170 27.320 25.804 1.00 0.38 \ ATOM 82 CA MET D 83 122.419 27.304 25.215 1.00 -1.05 \ ATOM 83 CA PRO D 84 120.525 26.982 21.934 1.00 -0.96 \ ATOM 84 CA VAL D 85 118.443 30.005 20.943 1.00 0.75 \ ATOM 85 CA GLY D 86 117.056 28.643 17.690 1.00 2.90 \ ATOM 86 CA ILE D 87 117.819 27.002 14.351 1.00 0.05 \ ATOM 87 CA LYS D 88 118.954 28.679 11.129 1.00 -0.64 \ ATOM 88 CA VAL D 89 118.643 27.136 7.667 1.00 0.97 \ ATOM 89 CA THR D 90 119.632 28.356 4.203 1.00 -0.45 \ ATOM 90 CA LEU D 91 119.013 27.454 0.559 1.00 2.06 \ ATOM 91 CA ARG D 92 121.523 27.527 -2.297 1.00 -0.43 \ ATOM 92 CA GLY D 93 121.750 26.013 -5.765 1.00 0.70 \ ATOM 93 CA GLU D 94 118.883 24.022 -7.256 1.00 -0.91 \ ATOM 94 CA ARG D 95 117.174 24.105 -3.858 1.00 -0.97 \ ATOM 95 CA MET D 96 116.876 27.889 -4.108 1.00 1.17 \ ATOM 96 CA TYR D 97 114.396 27.889 -6.992 1.00 -1.10 \ ATOM 97 CA VAL D 98 111.888 25.694 -5.158 1.00 -0.84 \ ATOM 98 CA PHE D 99 111.471 27.768 -1.996 1.00 1.14 \ ATOM 99 CA LEU D 100 110.084 30.831 -3.772 1.00 0.92 \ ATOM 100 CA GLU D 101 107.343 29.151 -5.804 1.00 -0.83 \ ATOM 101 CA LYS D 102 105.464 27.115 -3.198 1.00 -0.19 \ ATOM 102 CA LEU D 103 105.174 29.690 -0.416 1.00 0.46 \ ATOM 103 CA ILE D 104 104.482 32.774 -2.535 1.00 0.41 \ ATOM 104 CA ASN D 105 101.767 31.967 -5.073 1.00 -1.17 \ ATOM 105 CA ILE D 106 100.107 29.225 -3.025 1.00 0.05 \ ATOM 106 CA GLY D 107 99.999 29.971 0.689 1.00 -0.33 \ ATOM 107 CA LEU D 108 99.614 33.744 0.891 1.00 0.31 \ ATOM 108 CA PRO D 109 96.119 33.905 -0.603 1.00 2.82 \ ATOM 109 CA ARG D 110 94.844 31.488 2.042 1.00 0.56 \ ATOM 110 CA ILE D 111 96.026 33.301 5.170 1.00 -0.20 \ ATOM 111 CA ARG D 112 93.762 35.400 7.391 1.00 0.76 \ ATOM 112 CA ASP D 113 94.323 39.156 7.590 1.00 0.23 \ ATOM 113 CA PHE D 114 96.829 39.791 4.798 1.00 -0.28 \ ATOM 114 CA ARG D 115 97.521 43.263 3.410 1.00 -0.65 \ ATOM 115 CA GLY D 116 100.002 44.108 0.672 1.00 0.25 \ ATOM 116 CA ILE D 117 101.396 47.333 2.108 1.00 0.86 \ ATOM 117 CA ASN D 118 105.161 47.860 2.244 1.00 -0.84 \ ATOM 118 CA PRO D 119 106.511 50.466 4.663 1.00 -1.07 \ ATOM 119 CA ASN D 120 109.732 50.953 2.693 1.00 -0.39 \ ATOM 120 CA ALA D 121 112.006 47.966 3.307 1.00 -0.62 \ ATOM 121 CA PHE D 122 115.759 48.175 2.700 1.00 0.41 \ ATOM 122 CA ASP D 123 117.144 51.553 1.638 1.00 0.23 \ ATOM 123 CA GLY D 124 120.900 51.213 1.256 1.00 -0.65 \ ATOM 124 CA ARG D 125 121.789 47.679 0.189 1.00 -1.19 \ ATOM 125 CA GLY D 126 119.278 45.309 -1.373 1.00 1.50 \ ATOM 126 CA ASN D 127 118.778 42.975 1.579 1.00 -0.12 \ ATOM 127 CA TYR D 128 114.972 42.919 1.632 1.00 0.78 \ ATOM 128 CA ASN D 129 114.203 42.252 5.298 1.00 0.45 \ ATOM 129 CA LEU D 130 110.672 40.921 5.770 1.00 0.79 \ ATOM 130 CA GLY D 131 108.991 39.587 8.896 1.00 1.66 \ ATOM 131 CA ILE D 132 105.878 37.415 8.929 1.00 1.50 \ ATOM 132 CA LYS D 133 103.563 36.832 11.889 1.00 -0.79 \ ATOM 133 CA GLU D 134 102.944 33.620 13.828 1.00 0.32 \ ATOM 134 CA GLN D 135 99.633 32.976 12.073 1.00 -0.85 \ ATOM 135 CA LEU D 136 100.414 31.125 8.844 1.00 -0.74 \ ATOM 136 CA ILE D 137 98.420 28.700 6.698 1.00 -0.70 \ ATOM 137 CA PHE D 138 100.589 26.579 4.404 1.00 1.17 \ ATOM 138 CA PRO D 139 99.423 23.716 2.188 1.00 -0.29 \ ATOM 139 CA GLU D 140 102.489 21.716 3.216 1.00 0.89 \ ATOM 140 CA ILE D 141 101.763 22.149 6.924 1.00 0.23 \ ATOM 141 CA THR D 142 98.819 20.423 8.605 1.00 -0.96 \ ATOM 142 CA TYR D 143 96.145 22.294 10.559 1.00 -0.92 \ ATOM 143 CA ASP D 144 94.721 19.383 12.552 1.00 -0.39 \ ATOM 144 CA MET D 145 97.828 18.109 14.338 1.00 -0.89 \ ATOM 145 CA VAL D 146 99.791 21.234 15.256 1.00 -1.08 \ ATOM 146 CA ASP D 147 101.523 22.644 18.334 1.00 -1.03 \ ATOM 147 CA LYS D 148 102.488 26.292 18.846 1.00 -1.15 \ ATOM 148 CA THR D 149 102.430 28.711 15.912 1.00 -0.60 \ ATOM 149 CA ARG D 150 105.555 29.312 13.825 1.00 -1.03 \ ATOM 150 CA GLY D 151 107.625 32.468 13.501 1.00 1.43 \ ATOM 151 CA MET D 152 110.321 32.610 10.832 1.00 0.75 \ ATOM 152 CA ASP D 153 111.954 35.614 9.165 1.00 -0.06 \ ATOM 153 CA ILE D 154 112.505 35.772 5.407 1.00 1.11 \ ATOM 154 CA THR D 155 115.726 37.500 4.356 1.00 -0.18 \ ATOM 155 CA ILE D 156 117.447 37.227 0.975 1.00 0.85 \ ATOM 156 CA VAL D 157 120.793 38.565 -0.241 1.00 -0.60 \ ATOM 157 CA THR D 158 121.224 40.132 -3.677 1.00 -0.14 \ ATOM 158 CA THR D 159 124.452 41.578 -5.073 1.00 -0.51 \ ATOM 159 CA ALA D 160 123.089 44.781 -6.605 1.00 -0.77 \ ATOM 160 CA LYS D 161 124.252 48.399 -6.448 1.00 -1.01 \ ATOM 161 CA THR D 162 120.966 50.050 -7.417 1.00 -0.50 \ ATOM 162 CA ASP D 163 117.960 49.766 -5.103 1.00 -0.71 \ ATOM 163 CA GLU D 164 115.504 50.891 -7.781 1.00 -0.74 \ ATOM 164 CA GLU D 165 116.721 48.051 -10.000 1.00 -0.72 \ ATOM 165 CA ALA D 166 116.602 45.357 -7.318 1.00 0.93 \ ATOM 166 CA ARG D 167 112.928 46.110 -6.689 1.00 -0.71 \ ATOM 167 CA ALA D 168 111.587 45.138 -10.112 1.00 -0.99 \ ATOM 168 CA LEU D 169 112.602 41.525 -9.495 1.00 1.16 \ ATOM 169 CA LEU D 170 110.360 41.189 -6.442 1.00 1.47 \ ATOM 170 CA GLN D 171 107.428 42.603 -8.410 1.00 -0.57 \ ATOM 171 CA SER D 172 107.816 39.758 -10.905 1.00 -0.97 \ ATOM 172 CA MET D 173 107.031 36.848 -8.586 1.00 -0.69 \ ATOM 173 CA GLY D 174 105.218 38.996 -6.044 1.00 -0.13 \ ATOM 174 CA LEU D 175 102.687 41.825 -6.134 1.00 -0.42 \ ATOM 175 CA PRO D 176 102.285 42.960 -2.526 1.00 3.17 \ ATOM 176 CA PHE D 177 103.716 46.484 -2.561 1.00 -1.00 \ ATOM 177 CA ARG D 178 102.482 49.855 -1.306 1.00 -1.00 \ ATOM 178 CA LYS D 179 101.959 52.431 -4.056 1.00 -1.00 \ """, "e1pnuD1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e1pnuD1_csv", state=0, origin=1) cmd.zoom("e1pnuD1_csv", animate=-1)