cmd.read_pdbstr("""\ ATOM 1 CA GLN D 2 119.870 136.962 22.365 1.00 -1.00 \ ATOM 2 CA GLN D 3 123.535 136.246 21.707 1.00 -1.00 \ ATOM 3 CA LEU D 4 123.313 133.489 24.327 1.00 -1.00 \ ATOM 4 CA LYS D 5 120.020 132.397 22.784 1.00 -1.00 \ ATOM 5 CA THR D 6 121.594 131.890 19.387 1.00 -1.00 \ ATOM 6 CA LYS D 7 123.848 129.390 21.142 1.00 -1.00 \ ATOM 7 CA TYR D 8 120.913 127.667 22.854 1.00 -1.00 \ ATOM 8 CA ASN D 9 119.197 127.358 19.479 1.00 -1.00 \ ATOM 9 CA ASP D 10 122.338 126.439 17.493 1.00 -1.00 \ ATOM 10 CA GLN D 11 125.147 125.030 19.572 1.00 -1.00 \ ATOM 11 CA VAL D 12 123.355 123.220 22.350 1.00 -1.00 \ ATOM 12 CA ARG D 13 120.518 122.733 19.824 1.00 -1.00 \ ATOM 13 CA PRO D 14 122.521 119.852 18.396 1.00 -1.00 \ ATOM 14 CA ALA D 15 125.278 119.401 20.966 1.00 -1.00 \ ATOM 15 CA LEU D 16 122.678 117.416 22.884 1.00 -1.00 \ ATOM 16 CA MET D 17 120.753 115.994 19.933 1.00 -1.00 \ ATOM 17 CA GLN D 18 124.048 114.064 19.543 1.00 -1.00 \ ATOM 18 CA GLN D 19 125.188 113.510 23.134 1.00 -1.00 \ ATOM 19 CA PHE D 20 121.782 112.351 24.308 1.00 -1.00 \ ATOM 20 CA GLY D 21 120.686 111.425 20.800 1.00 -1.00 \ ATOM 21 CA TYR D 22 117.128 110.522 21.688 1.00 -1.00 \ ATOM 22 CA SER D 23 114.188 111.659 19.544 1.00 -1.00 \ ATOM 23 CA SER D 24 114.791 115.228 18.383 1.00 2.15 \ ATOM 24 CA VAL D 25 114.620 118.982 18.996 1.00 -1.02 \ ATOM 25 CA MET D 26 111.793 121.070 20.403 1.00 -0.38 \ ATOM 26 CA ALA D 27 112.052 118.544 23.260 1.00 -0.46 \ ATOM 27 CA VAL D 28 115.639 119.186 24.438 1.00 -0.57 \ ATOM 28 CA PRO D 29 116.722 121.581 27.261 1.00 0.84 \ ATOM 29 CA ARG D 30 114.984 124.975 27.476 1.00 -1.02 \ ATOM 30 CA ILE D 31 114.696 127.661 30.214 1.00 1.97 \ ATOM 31 CA GLU D 32 110.891 127.532 30.447 1.00 -0.84 \ ATOM 32 CA LYS D 33 111.034 130.695 32.595 1.00 0.14 \ ATOM 33 CA ILE D 34 112.989 132.774 35.091 1.00 2.27 \ ATOM 34 CA VAL D 35 111.310 134.704 37.926 1.00 -0.04 \ ATOM 35 CA VAL D 36 113.730 136.903 39.904 1.00 2.32 \ ATOM 36 CA ASN D 37 111.757 138.273 42.873 1.00 1.14 \ ATOM 37 CA GLU D 38 113.352 140.149 45.794 1.00 -0.09 \ ATOM 38 CA GLY D 39 112.765 139.685 49.503 1.00 0.15 \ ATOM 39 CA LEU D 40 112.769 143.359 50.523 1.00 -0.07 \ ATOM 40 CA GLY D 41 111.144 142.695 53.880 1.00 0.53 \ ATOM 41 CA SER D 42 108.312 144.653 55.480 1.00 -0.62 \ ATOM 42 CA SER D 43 110.055 146.128 58.488 1.00 -0.99 \ ATOM 43 CA LYS D 44 112.971 147.337 56.362 1.00 -0.88 \ ATOM 44 CA GLU D 45 111.970 150.932 57.019 1.00 -0.84 \ ATOM 45 CA ASP D 46 108.195 150.705 56.893 1.00 -0.05 \ ATOM 46 CA SER D 47 106.999 152.582 53.772 1.00 -0.72 \ ATOM 47 CA LYS D 48 110.362 154.371 53.867 1.00 -0.61 \ ATOM 48 CA ALA D 49 112.671 151.649 52.502 1.00 -1.23 \ ATOM 49 CA ILE D 50 109.945 149.760 50.547 1.00 -0.62 \ ATOM 50 CA ASP D 51 109.391 152.177 47.619 1.00 -0.91 \ ATOM 51 CA LYS D 52 113.169 152.321 47.479 1.00 -1.18 \ ATOM 52 CA ALA D 53 113.407 148.533 47.086 1.00 -0.28 \ ATOM 53 CA ALA D 54 110.778 149.027 44.374 1.00 -0.96 \ ATOM 54 CA LYS D 55 112.934 151.091 42.001 1.00 -0.84 \ ATOM 55 CA GLU D 56 116.289 149.401 42.523 1.00 -0.99 \ ATOM 56 CA LEU D 57 114.431 146.234 41.672 1.00 1.73 \ ATOM 57 CA ALA D 58 112.727 147.856 38.677 1.00 -0.58 \ ATOM 58 CA LEU D 59 116.241 149.185 37.879 1.00 -0.89 \ ATOM 59 CA ILE D 60 117.367 145.619 37.084 1.00 2.56 \ ATOM 60 CA THR D 61 114.813 144.474 34.451 1.00 0.76 \ ATOM 61 CA LEU D 62 112.398 146.422 32.202 1.00 0.71 \ ATOM 62 CA GLN D 63 109.588 144.906 34.291 1.00 -0.52 \ ATOM 63 CA LYS D 64 107.908 146.643 37.245 1.00 -0.95 \ ATOM 64 CA PRO D 65 107.489 145.914 40.954 1.00 0.56 \ ATOM 65 CA ILE D 66 104.824 143.653 42.428 1.00 -0.89 \ ATOM 66 CA ILE D 67 105.017 143.565 46.224 1.00 -0.99 \ ATOM 67 CA THR D 68 104.107 139.931 47.074 1.00 -0.62 \ ATOM 68 CA LYS D 69 100.819 139.773 48.996 1.00 -1.01 \ ATOM 69 CA ALA D 70 101.845 137.629 52.030 1.00 0.93 \ ATOM 70 CA LYS D 71 98.992 135.257 52.843 1.00 0.33 \ ATOM 71 CA LYS D 72 98.155 134.855 56.534 1.00 -0.78 \ ATOM 72 CA SER D 73 98.089 131.628 58.511 1.00 0.29 \ ATOM 73 CA ILE D 74 100.702 132.452 61.174 1.00 0.14 \ ATOM 74 CA SER D 75 99.191 135.143 63.466 1.00 -0.11 \ ATOM 75 CA ASN D 76 101.467 134.221 66.367 1.00 -0.46 \ ATOM 76 CA PHE D 77 104.503 136.456 66.057 1.00 2.59 \ ATOM 77 CA LYS D 78 104.123 139.230 63.494 1.00 0.42 \ ATOM 78 CA LEU D 79 102.057 138.560 60.356 1.00 1.06 \ ATOM 79 CA ARG D 80 98.715 140.343 60.046 1.00 0.17 \ ATOM 80 CA GLN D 81 96.119 139.168 57.457 1.00 -0.56 \ ATOM 81 CA GLY D 82 97.661 140.999 54.456 1.00 0.38 \ ATOM 82 CA MET D 83 100.812 143.117 54.157 1.00 -1.05 \ ATOM 83 CA PRO D 84 103.728 143.581 51.785 1.00 -0.96 \ ATOM 84 CA VAL D 85 106.692 141.387 52.821 1.00 0.75 \ ATOM 85 CA GLY D 86 108.578 141.920 49.563 1.00 2.90 \ ATOM 86 CA ILE D 87 108.600 142.130 45.744 1.00 0.05 \ ATOM 87 CA LYS D 88 108.843 139.822 42.688 1.00 -0.64 \ ATOM 88 CA VAL D 89 109.456 139.734 38.927 1.00 0.97 \ ATOM 89 CA THR D 90 109.431 136.924 36.279 1.00 -0.45 \ ATOM 90 CA LEU D 91 111.349 137.400 33.019 1.00 2.06 \ ATOM 91 CA ARG D 92 109.897 136.615 29.591 1.00 -0.43 \ ATOM 92 CA GLY D 93 110.539 137.225 25.887 1.00 0.70 \ ATOM 93 CA GLU D 94 113.779 139.013 24.863 1.00 -0.91 \ ATOM 94 CA ARG D 95 113.791 140.415 28.401 1.00 -0.97 \ ATOM 95 CA MET D 96 114.775 136.901 29.458 1.00 1.17 \ ATOM 96 CA TYR D 97 117.816 137.070 27.112 1.00 -1.10 \ ATOM 97 CA VAL D 98 118.897 140.470 28.567 1.00 -0.84 \ ATOM 98 CA PHE D 99 118.803 139.760 32.315 1.00 1.14 \ ATOM 99 CA LEU D 100 120.962 136.620 32.549 1.00 0.92 \ ATOM 100 CA GLU D 101 123.136 137.817 29.644 1.00 -0.83 \ ATOM 101 CA LYS D 102 124.080 140.709 31.994 1.00 -0.19 \ ATOM 102 CA LEU D 103 124.034 138.926 35.354 1.00 0.46 \ ATOM 103 CA ILE D 104 126.898 136.825 34.021 1.00 0.41 \ ATOM 104 CA ASN D 105 128.694 139.371 31.840 1.00 -1.17 \ ATOM 105 CA ILE D 106 129.649 141.425 34.922 1.00 0.05 \ ATOM 106 CA GLY D 107 127.195 140.576 37.747 1.00 -0.33 \ ATOM 107 CA LEU D 108 128.572 137.674 39.801 1.00 0.31 \ ATOM 108 CA PRO D 109 132.048 138.873 38.805 1.00 2.82 \ ATOM 109 CA ARG D 110 130.914 142.012 40.654 1.00 0.56 \ ATOM 110 CA ILE D 111 131.394 140.347 44.060 1.00 -0.20 \ ATOM 111 CA ARG D 112 134.028 139.973 46.788 1.00 0.76 \ ATOM 112 CA ASP D 113 135.136 136.417 47.606 1.00 0.23 \ ATOM 113 CA PHE D 114 133.832 134.817 44.422 1.00 -0.28 \ ATOM 114 CA ARG D 115 135.457 131.423 43.936 1.00 -0.65 \ ATOM 115 CA GLY D 116 132.465 129.140 43.335 1.00 0.25 \ ATOM 116 CA ILE D 117 128.685 128.876 43.015 1.00 0.86 \ ATOM 117 CA ASN D 118 126.145 126.130 43.800 1.00 -0.84 \ ATOM 118 CA PRO D 119 127.713 122.629 43.720 1.00 -1.07 \ ATOM 119 CA ASN D 120 125.001 121.055 41.548 1.00 -0.39 \ ATOM 120 CA ALA D 121 121.985 121.844 43.697 1.00 -0.62 \ ATOM 121 CA PHE D 122 119.895 120.094 41.037 1.00 0.41 \ ATOM 122 CA ASP D 123 118.354 116.827 42.224 1.00 0.23 \ ATOM 123 CA GLY D 124 114.809 115.747 41.296 1.00 -0.65 \ ATOM 124 CA ARG D 125 113.450 119.138 40.176 1.00 -1.19 \ ATOM 125 CA GLY D 126 114.890 120.773 37.064 1.00 1.50 \ ATOM 126 CA ASN D 127 115.095 124.299 38.436 1.00 -0.12 \ ATOM 127 CA TYR D 128 118.163 125.991 39.939 1.00 0.78 \ ATOM 128 CA ASN D 129 117.673 128.547 42.704 1.00 0.45 \ ATOM 129 CA LEU D 130 120.503 130.828 43.904 1.00 0.79 \ ATOM 130 CA GLY D 131 120.714 134.584 44.592 1.00 1.66 \ ATOM 131 CA ILE D 132 123.779 136.360 46.109 1.00 1.50 \ ATOM 132 CA LYS D 133 124.990 138.012 49.338 1.00 -0.79 \ ATOM 133 CA GLU D 134 123.998 141.273 51.105 1.00 0.32 \ ATOM 134 CA GLN D 135 127.319 142.705 49.915 1.00 -0.85 \ ATOM 135 CA LEU D 136 126.797 143.458 46.213 1.00 -0.74 \ ATOM 136 CA ILE D 137 128.283 145.637 43.405 1.00 -0.70 \ ATOM 137 CA PHE D 138 127.248 146.965 39.973 1.00 1.17 \ ATOM 138 CA PRO D 139 127.891 149.288 36.992 1.00 -0.29 \ ATOM 139 CA GLU D 140 124.488 150.811 36.108 1.00 0.89 \ ATOM 140 CA ILE D 141 123.716 151.221 39.803 1.00 0.23 \ ATOM 141 CA THR D 142 124.757 153.990 42.235 1.00 -0.96 \ ATOM 142 CA TYR D 143 127.576 153.002 44.587 1.00 -0.92 \ ATOM 143 CA ASP D 144 127.713 156.308 46.489 1.00 -0.39 \ ATOM 144 CA MET D 145 123.969 156.868 45.965 1.00 -0.89 \ ATOM 145 CA VAL D 146 123.324 153.625 47.924 1.00 -1.08 \ ATOM 146 CA ASP D 147 120.983 153.639 50.951 1.00 -1.03 \ ATOM 147 CA LYS D 148 120.478 150.014 51.936 1.00 -1.15 \ ATOM 148 CA THR D 149 121.843 146.737 50.641 1.00 -0.60 \ ATOM 149 CA ARG D 150 120.463 144.059 48.342 1.00 -1.03 \ ATOM 150 CA GLY D 151 119.303 140.479 49.065 1.00 1.43 \ ATOM 151 CA MET D 152 117.239 139.211 46.079 1.00 0.75 \ ATOM 152 CA ASP D 153 116.746 135.596 44.828 1.00 -0.06 \ ATOM 153 CA ILE D 154 116.625 134.332 41.191 1.00 1.11 \ ATOM 154 CA THR D 155 114.591 131.052 40.927 1.00 -0.18 \ ATOM 155 CA ILE D 156 115.470 129.543 37.476 1.00 0.85 \ ATOM 156 CA VAL D 157 113.308 126.997 35.650 1.00 -0.60 \ ATOM 157 CA THR D 158 113.798 124.836 32.535 1.00 -0.14 \ ATOM 158 CA THR D 159 111.782 122.267 30.590 1.00 -0.51 \ ATOM 159 CA ALA D 160 114.351 119.471 31.007 1.00 -0.77 \ ATOM 160 CA LYS D 161 112.791 116.092 31.827 1.00 -1.01 \ ATOM 161 CA THR D 162 115.968 115.005 33.620 1.00 -0.50 \ ATOM 162 CA ASP D 163 118.301 117.047 35.798 1.00 -0.71 \ ATOM 163 CA GLU D 164 120.724 115.729 33.169 1.00 -0.74 \ ATOM 164 CA GLU D 165 119.996 118.384 30.582 1.00 -0.72 \ ATOM 165 CA ALA D 166 119.345 121.068 33.167 1.00 0.93 \ ATOM 166 CA ARG D 167 122.711 120.921 34.940 1.00 -0.71 \ ATOM 167 CA ALA D 168 124.245 120.471 31.485 1.00 -0.99 \ ATOM 168 CA LEU D 169 122.407 123.610 30.499 1.00 1.16 \ ATOM 169 CA LEU D 170 123.669 125.917 33.234 1.00 1.47 \ ATOM 170 CA GLN D 171 127.017 124.307 32.301 1.00 -0.57 \ ATOM 171 CA SER D 172 126.753 125.582 28.754 1.00 -0.97 \ ATOM 172 CA MET D 173 125.610 129.057 29.792 1.00 -0.69 \ ATOM 173 CA GLY D 174 127.628 129.223 33.004 1.00 -0.13 \ ATOM 174 CA LEU D 175 131.145 128.720 34.336 1.00 -0.42 \ ATOM 175 CA PRO D 176 130.542 128.644 38.092 1.00 3.17 \ ATOM 176 CA PHE D 177 130.751 124.840 38.308 1.00 -1.00 \ ATOM 177 CA ARG D 178 132.761 123.281 41.154 1.00 -1.00 \ ATOM 178 CA LYS D 179 132.148 119.963 39.367 1.00 -1.00 \ """, "e1sm1D1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e1sm1D1_csv", state=0, origin=1) cmd.zoom("e1sm1D1_csv", animate=-1)