cmd.read_pdbstr("""\ ATOM 1 N SER A 1 28.817 1.134 -14.586 1.00 -1.00 \ ATOM 2 CA SER A 1 28.429 1.614 -13.227 1.00 -1.00 \ ATOM 3 C SER A 1 27.045 2.250 -13.255 1.00 -1.00 \ ATOM 4 O SER A 1 26.797 3.171 -14.030 1.00 -1.00 \ ATOM 5 CB SER A 1 29.442 2.631 -12.707 1.00 -1.00 \ ATOM 6 OG SER A 1 30.733 2.053 -12.610 1.00 -1.00 \ ATOM 7 N ASN A 2 26.155 1.766 -12.395 1.00 -1.00 \ ATOM 8 CA ASN A 2 24.787 2.270 -12.338 1.00 -1.00 \ ATOM 9 C ASN A 2 24.681 3.520 -11.464 1.00 -1.00 \ ATOM 10 O ASN A 2 25.268 3.584 -10.384 1.00 -1.00 \ ATOM 11 CB ASN A 2 23.848 1.192 -11.788 1.00 -1.00 \ ATOM 12 CG ASN A 2 23.736 -0.022 -12.699 1.00 -1.00 \ ATOM 13 OD1 ASN A 2 23.826 0.089 -13.919 1.00 -1.00 \ ATOM 14 ND2 ASN A 2 23.506 -1.184 -12.103 1.00 -1.00 \ ATOM 15 N ALA A 3 23.918 4.507 -11.926 1.00 0.58 \ ATOM 16 CA ALA A 3 23.631 5.700 -11.130 1.00 0.58 \ ATOM 17 C ALA A 3 22.678 5.404 -9.972 1.00 0.58 \ ATOM 18 O ALA A 3 22.668 6.114 -8.971 1.00 0.58 \ ATOM 19 CB ALA A 3 23.049 6.794 -12.004 1.00 0.58 \ ATOM 20 N MET A 4 21.865 4.367 -10.144 1.00 0.58 \ ATOM 21 CA MET A 4 20.929 3.933 -9.114 1.00 0.58 \ ATOM 22 C MET A 4 20.619 2.465 -9.312 1.00 0.58 \ ATOM 23 O MET A 4 20.962 1.861 -10.325 1.00 0.58 \ ATOM 24 CB MET A 4 19.629 4.750 -9.190 1.00 0.58 \ ATOM 25 CG MET A 4 18.894 4.646 -10.529 1.00 0.58 \ ATOM 26 SD MET A 4 17.359 5.575 -10.597 1.00 0.58 \ ATOM 27 CE MET A 4 16.268 4.507 -9.593 1.00 0.58 \ ATOM 28 N PHE A 5 19.952 1.884 -8.332 1.00 0.58 \ ATOM 29 CA PHE A 5 19.337 0.590 -8.510 1.00 0.58 \ ATOM 30 C PHE A 5 18.090 0.517 -7.656 1.00 0.58 \ ATOM 31 O PHE A 5 18.149 0.619 -6.447 1.00 0.58 \ ATOM 32 CB PHE A 5 20.263 -0.581 -8.184 1.00 0.58 \ ATOM 33 CG PHE A 5 19.653 -1.882 -8.548 1.00 0.58 \ ATOM 34 CD1 PHE A 5 19.851 -2.426 -9.800 1.00 0.58 \ ATOM 35 CD2 PHE A 5 18.770 -2.507 -7.675 1.00 0.58 \ ATOM 36 CE1 PHE A 5 19.219 -3.612 -10.156 1.00 0.58 \ ATOM 37 CE2 PHE A 5 18.151 -3.681 -8.023 1.00 0.58 \ ATOM 38 CZ PHE A 5 18.369 -4.231 -9.258 1.00 0.58 \ ATOM 39 N CYS A 6 16.955 0.335 -8.304 1.00 0.58 \ ATOM 40 CA CYS A 6 15.702 0.152 -7.596 1.00 0.58 \ ATOM 41 C CYS A 6 14.868 -0.836 -8.386 1.00 0.58 \ ATOM 42 O CYS A 6 14.754 -0.721 -9.599 1.00 0.58 \ ATOM 43 CB CYS A 6 14.979 1.491 -7.436 1.00 0.58 \ ATOM 44 SG CYS A 6 13.441 1.393 -6.505 1.00 0.58 \ ATOM 45 N TYR A 7 14.298 -1.823 -7.707 1.00 -1.60 \ ATOM 46 CA TYR A 7 13.461 -2.823 -8.356 1.00 -1.60 \ ATOM 47 C TYR A 7 12.216 -3.168 -7.552 1.00 -1.60 \ ATOM 48 O TYR A 7 11.659 -4.244 -7.698 1.00 -1.60 \ ATOM 49 CB TYR A 7 14.262 -4.082 -8.713 1.00 -1.60 \ ATOM 50 CG TYR A 7 14.829 -4.957 -7.601 1.00 -1.60 \ ATOM 51 CD1 TYR A 7 15.477 -6.139 -7.935 1.00 -1.60 \ ATOM 52 CD2 TYR A 7 14.735 -4.634 -6.249 1.00 -1.60 \ ATOM 53 CE1 TYR A 7 16.018 -6.966 -6.978 1.00 -1.60 \ ATOM 54 CE2 TYR A 7 15.275 -5.465 -5.274 1.00 -1.60 \ ATOM 55 CZ TYR A 7 15.908 -6.633 -5.647 1.00 -1.60 \ ATOM 56 OH TYR A 7 16.435 -7.452 -4.669 1.00 -1.60 \ ATOM 57 N GLN A 8 11.749 -2.216 -6.750 1.00 0.58 \ ATOM 58 CA GLN A 8 10.705 -2.504 -5.772 1.00 0.58 \ ATOM 59 C GLN A 8 9.275 -2.509 -6.308 1.00 0.58 \ ATOM 60 O GLN A 8 8.382 -2.976 -5.590 1.00 0.58 \ ATOM 61 CB GLN A 8 10.793 -1.546 -4.595 1.00 0.58 \ ATOM 62 CG GLN A 8 10.442 -0.110 -4.916 1.00 0.58 \ ATOM 63 CD GLN A 8 10.244 0.720 -3.662 1.00 0.58 \ ATOM 64 OE1 GLN A 8 10.198 0.184 -2.532 1.00 0.58 \ ATOM 65 NE2 GLN A 8 10.075 2.009 -3.841 1.00 0.58 \ ATOM 66 N CYS A 9 9.031 -2.000 -7.519 1.00 0.58 \ ATOM 67 CA CYS A 9 7.673 -2.005 -8.065 1.00 0.58 \ ATOM 68 C CYS A 9 7.575 -2.810 -9.353 1.00 0.58 \ ATOM 69 O CYS A 9 8.580 -3.196 -9.957 1.00 0.58 \ ATOM 70 CB CYS A 9 7.147 -0.577 -8.251 1.00 0.58 \ ATOM 71 SG CYS A 9 7.555 0.218 -9.819 1.00 0.58 \ ATOM 72 N GLN A 10 6.345 -3.063 -9.765 1.00 0.58 \ ATOM 73 CA GLN A 10 6.064 -3.954 -10.880 1.00 0.58 \ ATOM 74 C GLN A 10 6.620 -3.418 -12.197 1.00 0.58 \ ATOM 75 O GLN A 10 6.920 -4.204 -13.092 1.00 0.58 \ ATOM 76 CB GLN A 10 4.561 -4.197 -10.973 1.00 0.58 \ ATOM 77 CG GLN A 10 4.110 -5.161 -12.052 1.00 0.58 \ ATOM 78 CD GLN A 10 3.970 -4.503 -13.413 1.00 0.58 \ ATOM 79 OE1 GLN A 10 3.504 -3.377 -13.517 1.00 0.58 \ ATOM 80 NE2 GLN A 10 4.378 -5.212 -14.460 1.00 0.58 \ ATOM 81 N GLU A 11 6.747 -2.101 -12.320 1.00 0.58 \ ATOM 82 CA GLU A 11 7.147 -1.457 -13.569 1.00 0.58 \ ATOM 83 C GLU A 11 8.651 -1.286 -13.741 1.00 0.58 \ ATOM 84 O GLU A 11 9.100 -0.656 -14.689 1.00 0.58 \ ATOM 85 CB GLU A 11 6.438 -0.104 -13.691 1.00 0.58 \ ATOM 86 CG GLU A 11 4.940 -0.273 -13.883 1.00 0.58 \ ATOM 87 CD GLU A 11 4.186 1.028 -14.028 1.00 0.58 \ ATOM 88 OE1 GLU A 11 4.806 2.104 -14.154 1.00 0.58 \ ATOM 89 OE2 GLU A 11 2.940 0.966 -14.022 1.00 0.58 \ ATOM 90 N THR A 12 9.444 -1.887 -12.867 1.00 0.58 \ ATOM 91 CA THR A 12 10.889 -1.726 -12.931 1.00 0.58 \ ATOM 92 C THR A 12 11.435 -2.117 -14.318 1.00 0.58 \ ATOM 93 O THR A 12 10.953 -3.047 -14.946 1.00 0.58 \ ATOM 94 CB THR A 12 11.546 -2.514 -11.786 1.00 0.58 \ ATOM 95 OG1 THR A 12 12.918 -2.131 -11.670 1.00 0.58 \ ATOM 96 CG2 THR A 12 11.550 -3.999 -12.040 1.00 0.58 \ ATOM 97 N VAL A 13 12.440 -1.388 -14.787 1.00 -1.60 \ ATOM 98 CA VAL A 13 12.920 -1.539 -16.158 1.00 -1.60 \ ATOM 99 C VAL A 13 13.302 -2.985 -16.428 1.00 -1.60 \ ATOM 100 O VAL A 13 14.065 -3.584 -15.683 1.00 -1.60 \ ATOM 101 CB VAL A 13 14.140 -0.644 -16.449 1.00 -1.60 \ ATOM 102 CG1 VAL A 13 14.739 -0.975 -17.826 1.00 -1.60 \ ATOM 103 CG2 VAL A 13 13.769 0.811 -16.397 1.00 -1.60 \ ATOM 104 N GLY A 14 12.757 -3.526 -17.513 1.00 -1.60 \ ATOM 105 CA GLY A 14 13.075 -4.861 -17.984 1.00 -1.60 \ ATOM 106 C GLY A 14 12.649 -5.977 -17.050 1.00 -1.60 \ ATOM 107 O GLY A 14 13.024 -7.127 -17.257 1.00 -1.60 \ ATOM 108 N ASN A 15 11.827 -5.653 -16.054 1.00 0.58 \ ATOM 109 CA ASN A 15 11.606 -6.519 -14.903 1.00 0.58 \ ATOM 110 C ASN A 15 12.921 -7.001 -14.281 1.00 0.58 \ ATOM 111 O ASN A 15 13.038 -8.135 -13.834 1.00 0.58 \ ATOM 112 CB ASN A 15 10.688 -7.693 -15.253 1.00 0.58 \ ATOM 113 CG ASN A 15 10.006 -8.257 -14.029 1.00 0.58 \ ATOM 114 OD1 ASN A 15 9.992 -7.616 -12.977 1.00 0.58 \ ATOM 115 ND2 ASN A 15 9.467 -9.456 -14.142 1.00 0.58 \ ATOM 116 N LYS A 16 13.890 -6.090 -14.220 1.00 -1.60 \ ATOM 117 CA LYS A 16 15.221 -6.365 -13.687 1.00 -1.60 \ ATOM 118 C LYS A 16 15.655 -5.292 -12.692 1.00 -1.60 \ ATOM 119 O LYS A 16 16.145 -5.596 -11.608 1.00 -1.60 \ ATOM 120 CB LYS A 16 16.241 -6.456 -14.832 1.00 -1.60 \ ATOM 121 CG LYS A 16 16.155 -7.736 -15.643 1.00 -1.60 \ ATOM 122 CD LYS A 16 17.456 -7.981 -16.411 1.00 -1.60 \ ATOM 123 CE LYS A 16 17.369 -9.202 -17.327 1.00 -1.60 \ ATOM 124 NZ LYS A 16 18.624 -9.394 -18.129 1.00 -1.60 \ ATOM 125 N GLY A 17 15.483 -4.032 -13.059 1.00 0.58 \ ATOM 126 CA GLY A 17 15.868 -2.942 -12.191 1.00 0.58 \ ATOM 127 C GLY A 17 16.029 -1.638 -12.930 1.00 0.58 \ ATOM 128 O GLY A 17 16.487 -1.610 -14.076 1.00 0.58 \ ATOM 129 N CYS A 18 15.626 -0.554 -12.281 1.00 -1.00 \ ATOM 130 CA CYS A 18 15.843 0.801 -12.778 1.00 -1.00 \ ATOM 131 C CYS A 18 17.239 1.231 -12.367 1.00 -1.00 \ ATOM 132 O CYS A 18 17.545 1.288 -11.179 1.00 -1.00 \ ATOM 133 CB CYS A 18 14.799 1.751 -12.192 1.00 -1.00 \ ATOM 134 SG CYS A 18 13.094 1.381 -12.691 1.00 -1.00 \ ATOM 135 N THR A 19 18.087 1.518 -13.359 1.00 -1.00 \ ATOM 136 CA THR A 19 19.506 1.817 -13.124 1.00 -1.00 \ ATOM 137 C THR A 19 19.963 3.224 -13.506 1.00 -1.00 \ ATOM 138 O THR A 19 21.069 3.622 -13.156 1.00 -1.00 \ ATOM 139 CB THR A 19 20.403 0.805 -13.861 1.00 -1.00 \ ATOM 140 OG1 THR A 19 20.178 0.879 -15.274 1.00 -1.00 \ ATOM 141 CG2 THR A 19 20.045 -0.626 -13.479 1.00 -1.00 \ ATOM 142 N GLN A 20 19.126 3.970 -14.208 1.00 -1.00 \ ATOM 143 CA GLN A 20 19.476 5.318 -14.648 1.00 -1.00 \ ATOM 144 C GLN A 20 18.485 6.312 -14.058 1.00 -1.00 \ ATOM 145 O GLN A 20 18.871 7.209 -13.325 1.00 -1.00 \ ATOM 146 CB GLN A 20 19.501 5.398 -16.176 1.00 -1.00 \ ATOM 147 CG GLN A 20 20.481 4.433 -16.841 1.00 -1.00 \ ATOM 148 CD GLN A 20 20.591 4.625 -18.349 1.00 -1.00 \ ATOM 149 OE1 GLN A 20 19.785 5.334 -18.960 1.00 -1.00 \ ATOM 150 NE2 GLN A 20 21.599 4.002 -18.951 1.00 -1.00 \ ATOM 151 N VAL A 21 17.208 6.132 -14.390 1.00 -1.00 \ ATOM 152 CA VAL A 21 16.092 6.887 -13.817 1.00 -1.00 \ ATOM 153 C VAL A 21 14.930 5.907 -13.647 1.00 -1.00 \ ATOM 154 O VAL A 21 14.759 4.979 -14.444 1.00 -1.00 \ ATOM 155 CB VAL A 21 15.683 8.136 -14.716 1.00 -1.00 \ ATOM 156 CG1 VAL A 21 14.450 8.851 -14.175 0.66 -1.00 \ ATOM 157 CG2 VAL A 21 16.851 9.079 -14.950 0.66 -1.00 \ ATOM 158 N GLY A 22 14.129 6.104 -12.613 1.00 -1.00 \ ATOM 159 CA GLY A 22 12.983 5.257 -12.407 1.00 -1.00 \ ATOM 160 C GLY A 22 11.940 5.464 -13.483 1.00 -1.00 \ ATOM 161 O GLY A 22 11.706 6.584 -13.924 1.00 -1.00 \ ATOM 162 N VAL A 23 11.280 4.385 -13.867 1.00 -1.00 \ ATOM 163 CA VAL A 23 10.103 4.472 -14.720 1.00 -1.00 \ ATOM 164 C VAL A 23 9.045 5.379 -14.075 1.00 -1.00 \ ATOM 165 O VAL A 23 8.299 6.078 -14.771 1.00 -1.00 \ ATOM 166 CB VAL A 23 9.542 3.068 -15.021 1.00 -1.00 \ ATOM 167 CG1 VAL A 23 8.211 3.142 -15.752 1.00 -1.00 \ ATOM 168 CG2 VAL A 23 10.556 2.264 -15.814 1.00 -1.00 \ ATOM 169 N CYS A 24 9.005 5.395 -12.742 1.00 -1.00 \ ATOM 170 CA CYS A 24 8.089 6.239 -11.981 1.00 -1.00 \ ATOM 171 C CYS A 24 8.483 7.707 -11.983 1.00 -1.00 \ ATOM 172 O CYS A 24 7.714 8.544 -11.543 1.00 -1.00 \ ATOM 173 CB CYS A 24 8.055 5.767 -10.529 1.00 -1.00 \ ATOM 174 SG CYS A 24 9.660 5.852 -9.704 1.00 -1.00 \ ATOM 175 N GLY A 25 9.701 8.006 -12.425 1.00 -1.00 \ ATOM 176 CA GLY A 25 10.231 9.353 -12.419 1.00 -1.00 \ ATOM 177 C GLY A 25 11.278 9.613 -11.355 1.00 -1.00 \ ATOM 178 O GLY A 25 11.884 10.686 -11.330 1.00 -1.00 \ """, "e1upxA3_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e1upxA3_csv", state=0, origin=1) cmd.zoom("e1upxA3_csv", animate=-1)