cmd.read_pdbstr("""\ ATOM 1 N SER B 1 79.871 27.101 46.488 1.00 -1.00 \ ATOM 2 CA SER B 1 79.205 27.250 45.161 1.00 -1.00 \ ATOM 3 C SER B 1 77.726 26.900 45.250 1.00 -1.00 \ ATOM 4 O SER B 1 77.338 25.954 45.928 1.00 -1.00 \ ATOM 5 CB SER B 1 79.866 26.348 44.119 1.00 -1.00 \ ATOM 6 OG SER B 1 81.230 26.676 43.940 1.00 -1.00 \ ATOM 7 N ASN B 2 76.912 27.646 44.517 1.00 -1.00 \ ATOM 8 CA ASN B 2 75.477 27.406 44.488 1.00 -1.00 \ ATOM 9 C ASN B 2 75.139 26.194 43.622 1.00 -1.00 \ ATOM 10 O ASN B 2 75.647 26.052 42.506 1.00 -1.00 \ ATOM 11 CB ASN B 2 74.748 28.640 43.935 1.00 -1.00 \ ATOM 12 CG ASN B 2 74.897 29.872 44.818 1.00 -1.00 \ ATOM 13 OD1 ASN B 2 74.900 30.996 44.316 1.00 -1.00 \ ATOM 14 ND2 ASN B 2 74.997 29.669 46.123 1.00 -1.00 \ ATOM 15 N ALA B 3 74.248 25.349 44.118 1.00 0.58 \ ATOM 16 CA ALA B 3 73.705 24.240 43.333 1.00 0.58 \ ATOM 17 C ALA B 3 72.826 24.736 42.182 1.00 0.58 \ ATOM 18 O ALA B 3 72.677 24.070 41.166 1.00 0.58 \ ATOM 19 CB ALA B 3 72.892 23.330 44.220 1.00 0.58 \ ATOM 20 N MET B 4 72.203 25.887 42.391 1.00 0.58 \ ATOM 21 CA MET B 4 71.361 26.514 41.391 1.00 0.58 \ ATOM 22 C MET B 4 71.345 28.003 41.646 1.00 0.58 \ ATOM 23 O MET B 4 71.812 28.494 42.670 1.00 0.58 \ ATOM 24 CB MET B 4 69.928 25.965 41.444 1.00 0.58 \ ATOM 25 CG MET B 4 69.241 26.136 42.804 1.00 0.58 \ ATOM 26 SD MET B 4 67.533 25.570 42.855 1.00 0.58 \ ATOM 27 CE MET B 4 66.731 26.874 41.908 1.00 0.58 \ ATOM 28 N PHE B 5 70.824 28.740 40.689 1.00 0.58 \ ATOM 29 CA PHE B 5 70.492 30.120 40.945 1.00 0.58 \ ATOM 30 C PHE B 5 69.295 30.502 40.120 1.00 0.58 \ ATOM 31 O PHE B 5 69.355 30.533 38.898 1.00 0.58 \ ATOM 32 CB PHE B 5 71.641 31.098 40.704 1.00 0.58 \ ATOM 33 CG PHE B 5 71.315 32.449 41.227 1.00 0.58 \ ATOM 34 CD1 PHE B 5 71.554 32.768 42.555 1.00 0.58 \ ATOM 35 CD2 PHE B 5 70.615 33.349 40.442 1.00 0.58 \ ATOM 36 CE1 PHE B 5 71.175 33.997 43.058 1.00 0.58 \ ATOM 37 CE2 PHE B 5 70.229 34.553 40.939 1.00 0.58 \ ATOM 38 CZ PHE B 5 70.511 34.882 42.246 1.00 0.58 \ ATOM 39 N CYS B 6 68.201 30.789 40.801 1.00 0.58 \ ATOM 40 CA CYS B 6 66.984 31.251 40.142 1.00 0.58 \ ATOM 41 C CYS B 6 66.372 32.315 41.018 1.00 0.58 \ ATOM 42 O CYS B 6 66.268 32.130 42.236 1.00 0.58 \ ATOM 43 CB CYS B 6 66.017 30.091 39.939 1.00 0.58 \ ATOM 44 SG CYS B 6 64.536 30.498 38.998 1.00 0.58 \ ATOM 45 N TYR B 7 65.980 33.438 40.417 1.00 -1.60 \ ATOM 46 CA TYR B 7 65.366 34.547 41.135 1.00 -1.60 \ ATOM 47 C TYR B 7 64.220 35.183 40.349 1.00 -1.60 \ ATOM 48 O TYR B 7 63.908 36.343 40.560 1.00 -1.60 \ ATOM 49 CB TYR B 7 66.415 35.593 41.564 1.00 -1.60 \ ATOM 50 CG TYR B 7 67.185 36.365 40.510 1.00 -1.60 \ ATOM 51 CD1 TYR B 7 68.029 37.385 40.914 1.00 -1.60 \ ATOM 52 CD2 TYR B 7 67.078 36.116 39.144 1.00 -1.60 \ ATOM 53 CE1 TYR B 7 68.762 38.115 40.000 1.00 -1.60 \ ATOM 54 CE2 TYR B 7 67.814 36.850 38.210 1.00 -1.60 \ ATOM 55 CZ TYR B 7 68.645 37.843 38.650 1.00 -1.60 \ ATOM 56 OH TYR B 7 69.383 38.569 37.727 1.00 -1.60 \ ATOM 57 N GLN B 8 63.565 34.404 39.492 1.00 0.58 \ ATOM 58 CA GLN B 8 62.587 34.957 38.544 1.00 0.58 \ ATOM 59 C GLN B 8 61.185 35.213 39.082 1.00 0.58 \ ATOM 60 O GLN B 8 60.413 35.873 38.407 1.00 0.58 \ ATOM 61 CB GLN B 8 62.467 34.072 37.307 1.00 0.58 \ ATOM 62 CG GLN B 8 61.904 32.688 37.552 1.00 0.58 \ ATOM 63 CD GLN B 8 61.541 31.986 36.262 1.00 0.58 \ ATOM 64 OE1 GLN B 8 61.617 32.581 35.182 1.00 0.58 \ ATOM 65 NE2 GLN B 8 61.146 30.731 36.353 1.00 0.58 \ ATOM 66 N CYS B 9 60.838 34.687 40.255 1.00 0.58 \ ATOM 67 CA CYS B 9 59.503 34.928 40.807 1.00 0.58 \ ATOM 68 C CYS B 9 59.547 35.690 42.124 1.00 0.58 \ ATOM 69 O CYS B 9 60.600 35.854 42.752 1.00 0.58 \ ATOM 70 CB CYS B 9 58.684 33.636 40.936 1.00 0.58 \ ATOM 71 SG CYS B 9 58.990 32.677 42.422 1.00 0.58 \ ATOM 72 N GLN B 10 58.379 36.145 42.546 1.00 0.58 \ ATOM 73 CA GLN B 10 58.263 36.996 43.703 1.00 0.58 \ ATOM 74 C GLN B 10 58.698 36.299 44.986 1.00 0.58 \ ATOM 75 O GLN B 10 59.154 36.967 45.910 1.00 0.58 \ ATOM 76 CB GLN B 10 56.821 37.497 43.806 1.00 0.58 \ ATOM 77 CG GLN B 10 56.556 38.459 44.927 1.00 0.58 \ ATOM 78 CD GLN B 10 56.314 37.774 46.253 1.00 0.58 \ ATOM 79 OE1 GLN B 10 55.646 36.747 46.309 1.00 0.58 \ ATOM 80 NE2 GLN B 10 56.872 38.329 47.322 1.00 0.58 \ ATOM 81 N GLU B 11 58.559 34.977 45.048 1.00 0.58 \ ATOM 82 CA GLU B 11 58.828 34.219 46.264 1.00 0.58 \ ATOM 83 C GLU B 11 60.269 33.736 46.402 1.00 0.58 \ ATOM 84 O GLU B 11 60.574 32.961 47.308 1.00 0.58 \ ATOM 85 CB GLU B 11 57.865 33.027 46.341 1.00 0.58 \ ATOM 86 CG GLU B 11 56.428 33.438 46.591 1.00 0.58 \ ATOM 87 CD GLU B 11 55.448 32.286 46.681 1.00 0.58 \ ATOM 88 OE1 GLU B 11 55.873 31.118 46.720 1.00 0.58 \ ATOM 89 OE2 GLU B 11 54.232 32.569 46.708 1.00 0.58 \ ATOM 90 N THR B 12 61.172 34.185 45.547 1.00 0.58 \ ATOM 91 CA THR B 12 62.559 33.740 45.616 1.00 0.58 \ ATOM 92 C THR B 12 63.141 33.944 47.025 1.00 0.58 \ ATOM 93 O THR B 12 62.830 34.923 47.705 1.00 0.58 \ ATOM 94 CB THR B 12 63.379 34.443 44.525 1.00 0.58 \ ATOM 95 OG1 THR B 12 64.645 33.785 44.376 1.00 0.58 \ ATOM 96 CG2 THR B 12 63.674 35.891 44.858 1.00 0.58 \ ATOM 97 N VAL B 13 63.992 33.021 47.461 1.00 -1.60 \ ATOM 98 CA VAL B 13 64.423 33.010 48.852 1.00 -1.60 \ ATOM 99 C VAL B 13 65.026 34.351 49.261 1.00 -1.60 \ ATOM 100 O VAL B 13 65.946 34.848 48.613 1.00 -1.60 \ ATOM 101 CB VAL B 13 65.466 31.906 49.131 1.00 -1.60 \ ATOM 102 CG1 VAL B 13 65.999 32.027 50.552 1.00 -1.60 \ ATOM 103 CG2 VAL B 13 64.868 30.526 48.924 1.00 -1.60 \ ATOM 104 N GLY B 14 64.522 34.907 50.360 1.00 -1.60 \ ATOM 105 CA GLY B 14 65.055 36.121 50.947 1.00 -1.60 \ ATOM 106 C GLY B 14 64.948 37.339 50.058 1.00 -1.60 \ ATOM 107 O GLY B 14 65.591 38.350 50.318 1.00 -1.60 \ ATOM 108 N ASN B 15 64.130 37.251 49.008 1.00 0.58 \ ATOM 109 CA ASN B 15 64.157 38.208 47.908 1.00 0.58 \ ATOM 110 C ASN B 15 65.571 38.439 47.367 1.00 0.58 \ ATOM 111 O ASN B 15 65.945 39.555 46.981 1.00 0.58 \ ATOM 112 CB ASN B 15 63.463 39.518 48.265 1.00 0.58 \ ATOM 113 CG ASN B 15 62.948 40.226 47.034 1.00 0.58 \ ATOM 114 OD1 ASN B 15 62.819 39.620 45.966 1.00 0.58 \ ATOM 115 ND2 ASN B 15 62.687 41.515 47.157 1.00 0.58 \ ATOM 116 N LYS B 16 66.344 37.362 47.308 1.00 -1.60 \ ATOM 117 CA LYS B 16 67.710 37.391 46.808 1.00 -1.60 \ ATOM 118 C LYS B 16 67.920 36.326 45.735 1.00 -1.60 \ ATOM 119 O LYS B 16 68.471 36.610 44.679 1.00 -1.60 \ ATOM 120 CB LYS B 16 68.707 37.199 47.953 1.00 -1.60 \ ATOM 121 CG LYS B 16 68.749 38.367 48.913 1.00 -1.60 \ ATOM 122 CD LYS B 16 69.578 38.052 50.145 1.00 -1.60 \ ATOM 123 CE LYS B 16 69.553 39.199 51.150 1.00 -1.60 \ ATOM 124 NZ LYS B 16 70.260 38.846 52.418 1.00 -1.60 \ ATOM 125 N GLY B 17 67.482 35.101 45.986 1.00 0.58 \ ATOM 126 CA GLY B 17 67.672 34.033 45.028 1.00 0.58 \ ATOM 127 C GLY B 17 67.579 32.675 45.668 1.00 0.58 \ ATOM 128 O GLY B 17 67.994 32.478 46.814 1.00 0.58 \ ATOM 129 N CYS B 18 67.021 31.730 44.933 1.00 -1.00 \ ATOM 130 CA CYS B 18 66.997 30.330 45.311 1.00 -1.00 \ ATOM 131 C CYS B 18 68.291 29.700 44.849 1.00 -1.00 \ ATOM 132 O CYS B 18 68.571 29.684 43.657 1.00 -1.00 \ ATOM 133 CB CYS B 18 65.796 29.640 44.666 1.00 -1.00 \ ATOM 134 SG CYS B 18 64.200 30.333 45.183 1.00 -1.00 \ ATOM 135 N THR B 19 69.077 29.214 45.803 1.00 -1.00 \ ATOM 136 CA THR B 19 70.436 28.750 45.544 1.00 -1.00 \ ATOM 137 C THR B 19 70.619 27.261 45.739 1.00 -1.00 \ ATOM 138 O THR B 19 71.628 26.721 45.300 1.00 -1.00 \ ATOM 139 CB THR B 19 71.448 29.475 46.433 1.00 -1.00 \ ATOM 140 OG1 THR B 19 71.131 29.258 47.818 1.00 -1.00 \ ATOM 141 CG2 THR B 19 71.390 30.970 46.219 1.00 -1.00 \ ATOM 142 N GLN B 20 69.672 26.600 46.391 1.00 -1.00 \ ATOM 143 CA GLN B 20 69.775 25.173 46.631 1.00 -1.00 \ ATOM 144 C GLN B 20 68.554 24.449 46.095 1.00 -1.00 \ ATOM 145 O GLN B 20 68.682 23.538 45.289 1.00 -1.00 \ ATOM 146 CB GLN B 20 69.982 24.880 48.122 1.00 -1.00 \ ATOM 147 CG GLN B 20 70.160 23.397 48.420 1.00 -1.00 \ ATOM 148 CD GLN B 20 71.306 22.773 47.659 1.00 -1.00 \ ATOM 149 OE1 GLN B 20 72.426 23.244 47.751 1.00 -1.00 \ ATOM 150 NE2 GLN B 20 71.029 21.719 46.902 1.00 -1.00 \ ATOM 151 N VAL B 21 67.381 24.851 46.575 1.00 -1.00 \ ATOM 152 CA VAL B 21 66.089 24.375 46.069 1.00 -1.00 \ ATOM 153 C VAL B 21 65.147 25.562 45.972 1.00 -1.00 \ ATOM 154 O VAL B 21 65.218 26.491 46.772 1.00 -1.00 \ ATOM 155 CB VAL B 21 65.406 23.311 47.031 1.00 -1.00 \ ATOM 156 CG1 VAL B 21 65.519 23.731 48.490 0.33 -1.00 \ ATOM 157 CG2 VAL B 21 63.999 22.923 46.577 0.33 -1.00 \ ATOM 158 N GLY B 22 64.246 25.526 45.002 1.00 -1.00 \ ATOM 159 CA GLY B 22 63.313 26.611 44.818 1.00 -1.00 \ ATOM 160 C GLY B 22 62.206 26.571 45.852 1.00 -1.00 \ ATOM 161 O GLY B 22 61.753 25.492 46.258 1.00 -1.00 \ ATOM 162 N VAL B 23 61.742 27.747 46.255 1.00 -1.00 \ ATOM 163 CA VAL B 23 60.538 27.870 47.067 1.00 -1.00 \ ATOM 164 C VAL B 23 59.337 27.225 46.364 1.00 -1.00 \ ATOM 165 O VAL B 23 58.436 26.698 47.027 1.00 -1.00 \ ATOM 166 CB VAL B 23 60.279 29.356 47.418 1.00 -1.00 \ ATOM 167 CG1 VAL B 23 58.952 29.552 48.133 1.00 -1.00 \ ATOM 168 CG2 VAL B 23 61.432 29.886 48.250 1.00 -1.00 \ ATOM 169 N CYS B 24 59.348 27.230 45.037 1.00 -1.00 \ ATOM 170 CA CYS B 24 58.290 26.615 44.229 1.00 -1.00 \ ATOM 171 C CYS B 24 58.385 25.102 44.176 1.00 -1.00 \ ATOM 172 O CYS B 24 57.471 24.444 43.694 1.00 -1.00 \ ATOM 173 CB CYS B 24 58.351 27.127 42.796 1.00 -1.00 \ ATOM 174 SG CYS B 24 59.929 26.771 41.976 1.00 -1.00 \ ATOM 175 N GLY B 25 59.495 24.554 44.660 1.00 -1.00 \ ATOM 176 CA GLY B 25 59.733 23.130 44.591 1.00 -1.00 \ ATOM 177 C GLY B 25 60.721 22.711 43.520 1.00 -1.00 \ ATOM 178 O GLY B 25 61.044 21.536 43.424 1.00 -1.00 \ """, "e1upxB3_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e1upxB3_csv", state=0, origin=1) cmd.zoom("e1upxB3_csv", animate=-1)