cmd.read_pdbstr("""\ ATOM 1 CA GLN D 3 124.541 137.474 19.010 1.00 -1.00 \ ATOM 2 CA LEU D 4 126.336 135.010 21.291 1.00 -1.00 \ ATOM 3 CA LYS D 5 123.171 133.617 23.001 1.00 -1.00 \ ATOM 4 CA THR D 6 121.679 133.780 19.552 1.00 -1.00 \ ATOM 5 CA LYS D 7 123.294 130.416 18.623 1.00 -1.00 \ ATOM 6 CA TYR D 8 122.618 128.728 21.969 1.00 -1.00 \ ATOM 7 CA ASN D 9 119.217 128.697 20.249 1.00 -1.00 \ ATOM 8 CA ASP D 10 120.036 127.013 16.935 1.00 -1.00 \ ATOM 9 CA GLN D 11 123.664 125.862 17.052 1.00 -1.00 \ ATOM 10 CA VAL D 12 124.204 124.929 20.658 1.00 -1.00 \ ATOM 11 CA ARG D 13 120.805 123.263 21.072 1.00 -1.00 \ ATOM 12 CA PRO D 14 120.761 121.955 17.485 1.00 -1.00 \ ATOM 13 CA ALA D 15 124.170 120.559 18.513 1.00 -1.00 \ ATOM 14 CA LEU D 16 123.957 119.183 22.010 1.00 -1.00 \ ATOM 15 CA MET D 17 120.936 117.388 20.510 1.00 -1.00 \ ATOM 16 CA GLN D 18 123.311 114.656 19.222 1.00 -1.00 \ ATOM 17 CA GLN D 19 126.176 114.884 21.670 1.00 -1.00 \ ATOM 18 CA PHE D 20 123.193 113.975 23.779 1.00 -1.00 \ ATOM 19 CA GLY D 21 120.879 111.241 22.645 1.00 -1.00 \ ATOM 20 CA TYR D 22 118.250 110.189 20.112 1.00 -1.00 \ ATOM 21 CA SER D 23 114.876 111.892 20.286 1.00 -1.00 \ ATOM 22 CA SER D 24 113.980 115.002 18.335 1.00 2.15 \ ATOM 23 CA VAL D 25 114.960 118.666 18.301 1.00 -1.02 \ ATOM 24 CA MET D 26 112.254 120.086 20.569 1.00 -0.38 \ ATOM 25 CA ALA D 27 113.244 118.074 23.655 1.00 -0.46 \ ATOM 26 CA VAL D 28 116.233 120.155 24.643 1.00 -0.57 \ ATOM 27 CA PRO D 29 116.715 122.901 27.182 1.00 0.84 \ ATOM 28 CA ARG D 30 113.724 125.195 26.679 1.00 -1.02 \ ATOM 29 CA ILE D 31 113.571 126.694 30.193 1.00 1.97 \ ATOM 30 CA GLU D 32 110.337 128.699 30.519 1.00 -0.84 \ ATOM 31 CA LYS D 33 111.483 131.673 32.666 1.00 0.14 \ ATOM 32 CA ILE D 34 113.506 132.883 35.659 1.00 2.27 \ ATOM 33 CA VAL D 35 112.451 134.757 38.848 1.00 -0.04 \ ATOM 34 CA VAL D 36 113.588 138.057 40.426 1.00 2.32 \ ATOM 35 CA ASN D 37 112.254 137.721 43.993 1.00 1.14 \ ATOM 36 CA GLU D 38 114.367 140.342 45.771 1.00 -0.09 \ ATOM 37 CA GLY D 39 114.446 140.549 49.531 1.00 0.15 \ ATOM 38 CA LEU D 40 111.608 141.340 51.880 1.00 -0.07 \ ATOM 39 CA GLY D 41 111.861 144.737 53.603 1.00 0.53 \ ATOM 40 CA SER D 42 109.100 144.761 56.213 1.00 -0.62 \ ATOM 41 CA SER D 43 111.202 144.690 59.405 1.00 -0.99 \ ATOM 42 CA LYS D 44 113.673 147.310 58.167 1.00 -0.88 \ ATOM 43 CA GLU D 45 112.011 150.486 56.929 1.00 -0.84 \ ATOM 44 CA ASP D 46 108.407 150.693 55.757 1.00 -0.05 \ ATOM 45 CA SER D 47 106.616 152.438 52.935 1.00 -0.72 \ ATOM 46 CA LYS D 48 109.949 154.267 52.826 1.00 -0.61 \ ATOM 47 CA ALA D 49 111.726 150.992 52.040 1.00 -1.23 \ ATOM 48 CA ILE D 50 108.731 150.093 49.898 1.00 -0.62 \ ATOM 49 CA ASP D 51 109.522 153.022 47.629 1.00 -0.91 \ ATOM 50 CA LYS D 52 113.137 151.941 47.990 1.00 -1.18 \ ATOM 51 CA ALA D 53 113.500 148.936 45.687 1.00 -0.28 \ ATOM 52 CA ALA D 54 110.450 150.247 43.772 1.00 -0.96 \ ATOM 53 CA LYS D 55 112.602 152.570 41.679 1.00 -0.84 \ ATOM 54 CA GLU D 56 115.382 149.986 41.849 1.00 -0.99 \ ATOM 55 CA LEU D 57 112.835 147.856 40.065 1.00 1.73 \ ATOM 56 CA ALA D 58 113.083 149.049 36.454 1.00 -0.58 \ ATOM 57 CA LEU D 59 116.756 149.980 37.049 1.00 -0.89 \ ATOM 58 CA ILE D 60 118.008 146.385 37.488 1.00 2.56 \ ATOM 59 CA THR D 61 115.666 144.748 34.988 1.00 0.76 \ ATOM 60 CA LEU D 62 114.063 147.836 33.422 1.00 0.71 \ ATOM 61 CA GLN D 63 110.812 146.519 34.829 1.00 -0.52 \ ATOM 62 CA LYS D 64 108.594 147.587 37.737 1.00 -0.95 \ ATOM 63 CA PRO D 65 108.177 144.975 40.453 1.00 0.56 \ ATOM 64 CA ILE D 66 104.886 144.209 42.200 1.00 -0.89 \ ATOM 65 CA ILE D 67 104.709 144.036 46.010 1.00 -0.99 \ ATOM 66 CA THR D 68 103.700 140.501 47.012 1.00 -0.62 \ ATOM 67 CA LYS D 69 100.532 139.510 48.875 1.00 -1.01 \ ATOM 68 CA ALA D 70 100.635 137.628 52.194 1.00 0.93 \ ATOM 69 CA LYS D 71 99.048 134.229 52.864 1.00 0.33 \ ATOM 70 CA LYS D 72 96.451 134.670 55.688 1.00 -0.78 \ ATOM 71 CA SER D 73 99.344 134.210 58.134 1.00 0.29 \ ATOM 72 CA ILE D 74 98.955 135.463 61.713 1.00 0.14 \ ATOM 73 CA SER D 75 100.817 134.127 64.780 1.00 -0.11 \ ATOM 74 CA ASN D 76 101.928 135.765 68.023 1.00 -0.46 \ ATOM 75 CA PHE D 77 104.830 136.795 65.796 1.00 2.59 \ ATOM 76 CA LYS D 78 105.371 140.056 63.926 1.00 0.42 \ ATOM 77 CA LEU D 79 102.731 139.287 61.262 1.00 1.06 \ ATOM 78 CA ARG D 80 99.352 140.772 60.363 1.00 0.17 \ ATOM 79 CA GLN D 81 96.267 140.190 58.181 1.00 -0.56 \ ATOM 80 CA GLY D 82 97.020 141.447 54.673 1.00 0.38 \ ATOM 81 CA MET D 83 100.386 143.109 54.122 1.00 -1.05 \ ATOM 82 CA PRO D 84 103.132 142.957 51.518 1.00 -0.96 \ ATOM 83 CA VAL D 85 106.781 142.255 52.224 1.00 0.75 \ ATOM 84 CA GLY D 86 108.525 143.534 49.101 1.00 2.90 \ ATOM 85 CA ILE D 87 109.386 142.688 45.491 1.00 0.05 \ ATOM 86 CA LYS D 88 109.658 139.966 42.818 1.00 -0.64 \ ATOM 87 CA VAL D 89 109.718 139.923 39.017 1.00 0.97 \ ATOM 88 CA THR D 90 109.578 137.099 36.467 1.00 -0.45 \ ATOM 89 CA LEU D 91 111.883 136.957 33.439 1.00 2.06 \ ATOM 90 CA ARG D 92 111.082 135.600 29.949 1.00 -0.43 \ ATOM 91 CA GLY D 93 110.715 136.484 26.269 1.00 0.70 \ ATOM 92 CA GLU D 94 113.485 138.773 25.000 1.00 -0.91 \ ATOM 93 CA ARG D 95 113.618 140.278 28.507 1.00 -0.97 \ ATOM 94 CA MET D 96 114.973 137.137 30.211 1.00 1.17 \ ATOM 95 CA TYR D 97 117.332 137.005 27.268 1.00 -1.10 \ ATOM 96 CA VAL D 98 118.542 140.385 28.506 1.00 -0.84 \ ATOM 97 CA PHE D 99 118.195 139.299 32.139 1.00 1.14 \ ATOM 98 CA LEU D 100 120.545 136.370 31.527 1.00 0.92 \ ATOM 99 CA GLU D 101 123.347 137.806 29.391 1.00 -0.83 \ ATOM 100 CA LYS D 102 123.295 140.771 31.744 1.00 -0.19 \ ATOM 101 CA LEU D 103 124.875 139.810 35.122 1.00 0.46 \ ATOM 102 CA ILE D 104 127.422 137.125 34.190 1.00 0.41 \ ATOM 103 CA ASN D 105 129.938 138.919 31.985 1.00 -1.17 \ ATOM 104 CA ILE D 106 129.644 141.826 34.395 1.00 0.05 \ ATOM 105 CA GLY D 107 128.011 140.198 37.388 1.00 -0.33 \ ATOM 106 CA LEU D 108 130.948 138.300 38.849 1.00 0.31 \ ATOM 107 CA PRO D 109 133.953 139.133 36.642 1.00 2.82 \ ATOM 108 CA ARG D 110 135.325 140.736 39.818 1.00 0.56 \ ATOM 109 CA ILE D 111 134.211 141.229 43.403 1.00 -0.20 \ ATOM 110 CA ARG D 112 135.007 140.323 47.006 1.00 0.76 \ ATOM 111 CA ASP D 113 134.448 137.034 48.883 1.00 0.23 \ ATOM 112 CA PHE D 114 133.606 135.466 45.472 1.00 -0.28 \ ATOM 113 CA ARG D 115 134.206 131.738 44.878 1.00 -0.65 \ ATOM 114 CA GLY D 116 133.275 128.811 42.643 1.00 0.25 \ ATOM 115 CA ILE D 117 131.985 125.854 44.726 1.00 0.86 \ ATOM 116 CA ASN D 118 128.358 124.662 45.050 1.00 -0.84 \ ATOM 117 CA PRO D 119 126.893 121.850 47.167 1.00 -1.07 \ ATOM 118 CA ASN D 120 123.846 119.839 46.034 1.00 -0.39 \ ATOM 119 CA ALA D 121 121.837 121.224 43.097 1.00 -0.62 \ ATOM 120 CA PHE D 122 118.186 120.163 42.706 1.00 0.41 \ ATOM 121 CA ASP D 123 118.275 116.389 42.031 1.00 0.23 \ ATOM 122 CA GLY D 124 114.553 116.452 41.337 1.00 -0.65 \ ATOM 123 CA ARG D 125 113.821 119.994 40.096 1.00 -1.19 \ ATOM 124 CA GLY D 126 114.794 121.492 36.736 1.00 1.50 \ ATOM 125 CA ASN D 127 115.812 124.805 38.235 1.00 -0.12 \ ATOM 126 CA TYR D 128 119.212 125.980 39.544 1.00 0.78 \ ATOM 127 CA ASN D 129 118.796 128.733 42.192 1.00 0.45 \ ATOM 128 CA LEU D 130 122.103 130.275 43.263 1.00 0.79 \ ATOM 129 CA GLY D 131 123.008 131.851 46.592 1.00 1.66 \ ATOM 130 CA ILE D 132 123.278 135.665 46.450 1.00 1.50 \ ATOM 131 CA LYS D 133 124.775 137.920 49.149 1.00 -0.79 \ ATOM 132 CA GLU D 134 123.668 141.308 50.536 1.00 0.32 \ ATOM 133 CA GLN D 135 126.960 143.160 49.945 1.00 -0.85 \ ATOM 134 CA LEU D 136 126.739 143.071 46.164 1.00 -0.74 \ ATOM 135 CA ILE D 137 129.265 144.197 43.541 1.00 -0.70 \ ATOM 136 CA PHE D 138 128.517 144.708 39.808 1.00 1.17 \ ATOM 137 CA PRO D 139 127.817 147.157 36.949 1.00 -0.29 \ ATOM 138 CA GLU D 140 124.196 148.468 37.101 1.00 0.89 \ ATOM 139 CA ILE D 141 124.673 149.587 40.719 1.00 0.23 \ ATOM 140 CA THR D 142 126.790 152.434 42.158 1.00 -0.96 \ ATOM 141 CA TYR D 143 129.004 152.249 45.206 1.00 -0.92 \ ATOM 142 CA ASP D 144 128.338 155.988 44.924 1.00 -0.39 \ ATOM 143 CA MET D 145 124.584 155.308 44.886 1.00 -0.89 \ ATOM 144 CA VAL D 146 124.136 152.745 47.701 1.00 -1.08 \ ATOM 145 CA ASP D 147 122.070 153.453 50.871 1.00 -1.03 \ ATOM 146 CA LYS D 148 120.936 150.075 52.171 1.00 -1.15 \ ATOM 147 CA THR D 149 121.953 146.561 51.076 1.00 -0.60 \ ATOM 148 CA ARG D 150 120.500 144.169 48.487 1.00 -1.03 \ ATOM 149 CA GLY D 151 119.566 140.487 48.941 1.00 1.43 \ ATOM 150 CA MET D 152 117.647 139.683 45.702 1.00 0.75 \ ATOM 151 CA ASP D 153 117.106 136.082 44.477 1.00 -0.06 \ ATOM 152 CA ILE D 154 117.533 133.832 41.389 1.00 1.11 \ ATOM 153 CA THR D 155 116.010 130.385 40.787 1.00 -0.18 \ ATOM 154 CA ILE D 156 115.275 129.191 37.246 1.00 0.85 \ ATOM 155 CA VAL D 157 113.796 125.957 35.900 1.00 -0.60 \ ATOM 156 CA THR D 158 114.484 124.385 32.492 1.00 -0.14 \ ATOM 157 CA THR D 159 112.230 122.225 30.343 1.00 -0.51 \ ATOM 158 CA ALA D 160 113.762 118.801 31.017 1.00 -0.77 \ ATOM 159 CA LYS D 161 112.679 115.460 32.499 1.00 -1.01 \ ATOM 160 CA THR D 162 116.312 114.751 33.348 1.00 -0.50 \ ATOM 161 CA ASP D 163 118.537 116.334 36.007 1.00 -0.71 \ ATOM 162 CA GLU D 164 121.455 115.212 33.848 1.00 -0.74 \ ATOM 163 CA GLU D 165 119.942 117.264 31.051 1.00 -0.72 \ ATOM 164 CA ALA D 166 119.407 120.449 33.071 1.00 0.93 \ ATOM 165 CA ARG D 167 122.898 120.072 34.535 1.00 -0.71 \ ATOM 166 CA ALA D 168 124.506 120.903 31.174 1.00 -0.99 \ ATOM 167 CA LEU D 169 122.284 124.005 31.118 1.00 1.16 \ ATOM 168 CA LEU D 170 124.847 125.466 33.537 1.00 1.47 \ ATOM 169 CA GLN D 171 127.716 124.590 31.198 1.00 -0.57 \ ATOM 170 CA SER D 172 126.414 127.339 28.895 1.00 -0.97 \ ATOM 171 CA MET D 173 126.898 130.968 30.052 1.00 -0.69 \ ATOM 172 CA GLY D 174 128.103 129.468 33.328 1.00 -0.13 \ ATOM 173 CA LEU D 175 131.655 128.367 34.144 1.00 -0.42 \ ATOM 174 CA PRO D 176 130.646 127.309 37.669 1.00 3.17 \ ATOM 175 CA PHE D 177 132.810 124.145 37.655 1.00 -1.00 \ ATOM 176 CA ARG D 178 133.015 122.970 41.313 1.00 -1.00 \ ATOM 177 CA LYS D 179 134.713 119.625 40.629 1.00 -1.00 \ """, "e1xbpD1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e1xbpD1_csv", state=0, origin=1) cmd.zoom("e1xbpD1_csv", animate=-1)