cmd.read_pdbstr("""\ ATOM 9 N VAL A 2 17.218 -6.845 -6.324 1.00 0.44 \ ATOM 10 CA VAL A 2 15.953 -7.106 -5.678 1.00 0.44 \ ATOM 11 C VAL A 2 14.955 -7.697 -6.652 1.00 0.44 \ ATOM 12 O VAL A 2 14.960 -7.330 -7.834 1.00 0.44 \ ATOM 13 CB VAL A 2 15.451 -5.916 -4.860 1.00 0.44 \ ATOM 14 CG1 VAL A 2 13.946 -6.006 -4.655 1.00 0.44 \ ATOM 15 CG2 VAL A 2 16.145 -5.926 -3.503 1.00 0.44 \ ATOM 16 N SER A 3 14.152 -8.653 -6.174 1.00 0.44 \ ATOM 17 CA SER A 3 13.221 -9.261 -7.082 1.00 0.44 \ ATOM 18 C SER A 3 12.343 -8.229 -7.752 1.00 0.44 \ ATOM 19 O SER A 3 12.149 -7.149 -7.201 1.00 0.44 \ ATOM 20 CB SER A 3 12.446 -10.393 -6.442 1.00 0.44 \ ATOM 21 OG SER A 3 11.469 -9.933 -5.545 1.00 0.44 \ ATOM 22 N LYS A 4 11.852 -8.576 -8.942 1.00 -2.20 \ ATOM 23 CA LYS A 4 10.939 -7.740 -9.706 1.00 -2.20 \ ATOM 24 C LYS A 4 9.740 -7.416 -8.802 1.00 -2.20 \ ATOM 25 O LYS A 4 9.328 -6.252 -8.604 1.00 -2.20 \ ATOM 26 CB LYS A 4 10.419 -8.515 -10.916 1.00 -2.20 \ ATOM 27 CG LYS A 4 11.147 -8.315 -12.240 1.00 -2.20 \ ATOM 28 CD LYS A 4 12.337 -7.380 -12.225 1.00 -2.20 \ ATOM 29 CE LYS A 4 12.873 -7.134 -13.633 1.00 -2.20 \ ATOM 30 NZ LYS A 4 14.049 -6.251 -13.653 1.00 -2.20 \ ATOM 31 N LEU A 5 9.181 -8.483 -8.224 1.00 0.44 \ ATOM 32 CA LEU A 5 8.040 -8.330 -7.353 1.00 0.44 \ ATOM 33 C LEU A 5 8.338 -7.399 -6.223 1.00 0.44 \ ATOM 34 O LEU A 5 7.550 -6.532 -5.899 1.00 0.44 \ ATOM 35 CB LEU A 5 7.704 -9.667 -6.685 1.00 0.44 \ ATOM 36 CG LEU A 5 6.242 -9.906 -6.362 1.00 0.44 \ ATOM 37 CD1 LEU A 5 6.120 -10.327 -4.923 1.00 0.44 \ ATOM 38 CD2 LEU A 5 5.387 -8.681 -6.604 1.00 0.44 \ ATOM 39 N SER A 6 9.467 -7.602 -5.580 1.00 0.44 \ ATOM 40 CA SER A 6 9.828 -6.778 -4.427 1.00 0.44 \ ATOM 41 C SER A 6 9.980 -5.300 -4.724 1.00 0.44 \ ATOM 42 O SER A 6 9.605 -4.430 -3.925 1.00 0.44 \ ATOM 43 CB SER A 6 11.065 -7.274 -3.716 1.00 0.44 \ ATOM 44 OG SER A 6 11.275 -6.491 -2.568 1.00 0.44 \ ATOM 45 N GLN A 7 10.561 -5.083 -5.873 1.00 0.44 \ ATOM 46 CA GLN A 7 10.807 -3.774 -6.404 1.00 0.44 \ ATOM 47 C GLN A 7 9.454 -3.106 -6.717 1.00 0.44 \ ATOM 48 O GLN A 7 9.178 -1.994 -6.305 1.00 0.44 \ ATOM 49 CB GLN A 7 11.599 -4.072 -7.665 1.00 0.44 \ ATOM 50 CG GLN A 7 12.346 -2.926 -8.326 1.00 0.44 \ ATOM 51 CD GLN A 7 13.021 -3.542 -9.536 1.00 0.44 \ ATOM 52 OE1 GLN A 7 12.417 -3.652 -10.608 1.00 0.44 \ ATOM 53 NE2 GLN A 7 14.201 -4.123 -9.321 1.00 0.44 \ ATOM 54 N LEU A 8 8.582 -3.814 -7.418 1.00 0.44 \ ATOM 55 CA LEU A 8 7.241 -3.344 -7.765 1.00 0.44 \ ATOM 56 C LEU A 8 6.429 -2.957 -6.522 1.00 0.44 \ ATOM 57 O LEU A 8 5.744 -1.935 -6.472 1.00 0.44 \ ATOM 58 CB LEU A 8 6.542 -4.442 -8.588 1.00 0.44 \ ATOM 59 CG LEU A 8 5.146 -4.068 -9.051 1.00 0.44 \ ATOM 60 CD1 LEU A 8 5.149 -2.660 -9.640 1.00 0.44 \ ATOM 61 CD2 LEU A 8 4.750 -5.073 -10.119 1.00 0.44 \ ATOM 62 N GLN A 9 6.511 -3.797 -5.505 1.00 0.44 \ ATOM 63 CA GLN A 9 5.847 -3.594 -4.251 1.00 0.44 \ ATOM 64 C GLN A 9 6.238 -2.307 -3.546 1.00 0.44 \ ATOM 65 O GLN A 9 5.397 -1.536 -3.102 1.00 0.44 \ ATOM 66 CB GLN A 9 6.057 -4.791 -3.312 1.00 0.44 \ ATOM 67 CG GLN A 9 5.423 -6.080 -3.845 1.00 0.44 \ ATOM 68 CD GLN A 9 5.615 -7.254 -2.899 1.00 0.44 \ ATOM 69 OE1 GLN A 9 6.629 -7.339 -2.214 1.00 0.44 \ ATOM 70 NE2 GLN A 9 4.637 -8.148 -2.839 1.00 0.44 \ ATOM 71 N THR A 10 7.531 -2.067 -3.412 1.00 0.44 \ ATOM 72 CA THR A 10 8.075 -0.884 -2.758 1.00 0.44 \ ATOM 73 C THR A 10 7.749 0.430 -3.478 1.00 0.44 \ ATOM 74 O THR A 10 7.328 1.389 -2.836 1.00 0.44 \ ATOM 75 CB THR A 10 9.586 -1.059 -2.573 1.00 0.44 \ ATOM 76 OG1 THR A 10 9.834 -2.289 -1.920 1.00 0.44 \ ATOM 77 CG2 THR A 10 10.125 0.093 -1.738 1.00 0.44 \ ATOM 78 N GLU A 11 7.947 0.432 -4.803 1.00 0.44 \ ATOM 79 CA GLU A 11 7.666 1.555 -5.689 1.00 0.44 \ ATOM 80 C GLU A 11 6.178 1.894 -5.625 1.00 0.44 \ ATOM 81 O GLU A 11 5.829 3.069 -5.518 1.00 0.44 \ ATOM 82 CB GLU A 11 8.066 1.338 -7.179 1.00 0.44 \ ATOM 83 CG GLU A 11 9.592 1.352 -7.307 1.00 0.44 \ ATOM 84 CD GLU A 11 10.198 1.262 -8.696 1.00 0.44 \ ATOM 85 OE1 GLU A 11 9.456 0.642 -9.589 1.00 0.44 \ ATOM 86 OE2 GLU A 11 11.351 1.614 -8.908 1.00 0.44 \ ATOM 87 N LEU A 12 5.318 0.862 -5.684 1.00 0.44 \ ATOM 88 CA LEU A 12 3.869 1.019 -5.652 1.00 0.44 \ ATOM 89 C LEU A 12 3.379 1.597 -4.332 1.00 0.44 \ ATOM 90 O LEU A 12 2.482 2.437 -4.262 1.00 0.44 \ ATOM 91 CB LEU A 12 3.158 -0.305 -5.996 1.00 0.44 \ ATOM 92 CG LEU A 12 2.297 -0.271 -7.251 1.00 0.44 \ ATOM 93 CD1 LEU A 12 3.208 -0.289 -8.461 1.00 0.44 \ ATOM 94 CD2 LEU A 12 1.358 -1.479 -7.293 1.00 0.44 \ ATOM 95 N LEU A 13 3.976 1.147 -3.249 1.00 0.44 \ ATOM 96 CA LEU A 13 3.576 1.646 -1.954 1.00 0.44 \ ATOM 97 C LEU A 13 3.980 3.100 -1.778 1.00 0.44 \ ATOM 98 O LEU A 13 3.215 3.880 -1.233 1.00 0.44 \ ATOM 99 CB LEU A 13 4.162 0.799 -0.809 1.00 0.44 \ ATOM 100 CG LEU A 13 3.707 1.212 0.602 1.00 0.44 \ ATOM 101 CD1 LEU A 13 2.186 1.099 0.685 1.00 0.44 \ ATOM 102 CD2 LEU A 13 4.328 0.318 1.690 1.00 0.44 \ ATOM 103 N ALA A 14 5.178 3.481 -2.236 1.00 -2.19 \ ATOM 104 CA ALA A 14 5.598 4.864 -2.093 1.00 -2.19 \ ATOM 105 C ALA A 14 4.673 5.713 -2.940 1.00 -2.19 \ ATOM 106 O ALA A 14 4.199 6.731 -2.468 1.00 -2.19 \ ATOM 107 CB ALA A 14 7.067 5.071 -2.413 1.00 -2.19 \ ATOM 108 N ALA A 15 4.384 5.276 -4.177 1.00 0.44 \ ATOM 109 CA ALA A 15 3.488 5.975 -5.089 1.00 0.44 \ ATOM 110 C ALA A 15 2.111 6.251 -4.466 1.00 0.44 \ ATOM 111 O ALA A 15 1.535 7.330 -4.619 1.00 0.44 \ ATOM 112 CB ALA A 15 3.413 5.373 -6.481 1.00 0.44 \ ATOM 113 N LEU A 16 1.590 5.284 -3.719 1.00 0.44 \ ATOM 114 CA LEU A 16 0.317 5.433 -3.056 1.00 0.44 \ ATOM 115 C LEU A 16 0.384 6.465 -1.965 1.00 0.44 \ ATOM 116 O LEU A 16 -0.488 7.335 -1.817 1.00 0.44 \ ATOM 117 CB LEU A 16 -0.173 4.123 -2.438 1.00 0.44 \ ATOM 118 CG LEU A 16 -0.722 3.153 -3.499 1.00 0.44 \ ATOM 119 CD1 LEU A 16 -1.132 1.810 -2.876 1.00 0.44 \ ATOM 120 CD2 LEU A 16 -1.889 3.768 -4.270 1.00 0.44 \ ATOM 121 N LEU A 17 1.415 6.372 -1.165 1.00 0.44 \ ATOM 122 CA LEU A 17 1.524 7.339 -0.089 1.00 0.44 \ ATOM 123 C LEU A 17 1.654 8.792 -0.642 1.00 0.44 \ ATOM 124 O LEU A 17 1.076 9.750 -0.126 1.00 0.44 \ ATOM 125 CB LEU A 17 2.731 6.954 0.792 1.00 0.44 \ ATOM 126 CG LEU A 17 2.556 5.828 1.820 1.00 0.44 \ ATOM 127 CD1 LEU A 17 3.937 5.241 2.160 1.00 0.44 \ ATOM 128 CD2 LEU A 17 1.958 6.368 3.113 1.00 0.44 \ ATOM 129 N GLU A 18 2.424 8.933 -1.724 1.00 0.44 \ ATOM 130 CA GLU A 18 2.658 10.227 -2.360 1.00 0.44 \ ATOM 131 C GLU A 18 1.364 10.807 -2.905 1.00 0.44 \ ATOM 132 O GLU A 18 1.156 12.029 -2.916 1.00 0.44 \ ATOM 133 CB GLU A 18 3.607 10.020 -3.550 1.00 0.44 \ ATOM 134 CG GLU A 18 4.127 11.314 -4.202 1.00 0.44 \ ATOM 135 CD GLU A 18 4.379 12.394 -3.194 1.00 0.44 \ ATOM 136 OE1 GLU A 18 5.134 12.268 -2.259 1.00 0.44 \ ATOM 137 OE2 GLU A 18 3.644 13.461 -3.402 1.00 0.44 \ ATOM 138 N SER A 19 0.515 9.894 -3.379 1.00 0.44 \ ATOM 139 CA SER A 19 -0.753 10.231 -3.963 1.00 0.44 \ ATOM 140 C SER A 19 -1.765 10.621 -2.894 1.00 0.44 \ ATOM 141 O SER A 19 -2.794 11.187 -3.230 1.00 0.44 \ ATOM 142 CB SER A 19 -1.326 9.104 -4.810 1.00 0.44 \ ATOM 143 OG SER A 19 -2.038 8.210 -3.963 1.00 0.44 \ ATOM 149 N LEU A 21 -2.658 8.402 -0.005 1.00 0.44 \ ATOM 150 CA LEU A 21 -3.146 7.259 0.766 1.00 0.44 \ ATOM 151 C LEU A 21 -3.362 7.585 2.245 1.00 0.44 \ ATOM 152 O LEU A 21 -2.429 8.039 2.905 1.00 0.44 \ ATOM 153 CB LEU A 21 -2.231 6.044 0.669 1.00 0.44 \ ATOM 154 CG LEU A 21 -2.911 4.853 1.334 1.00 0.44 \ ATOM 155 CD1 LEU A 21 -4.033 4.344 0.435 1.00 0.44 \ ATOM 156 CD2 LEU A 21 -1.927 3.748 1.672 1.00 0.44 \ ATOM 157 N SER A 22 -4.597 7.334 2.742 1.00 -2.20 \ ATOM 158 CA SER A 22 -5.029 7.594 4.128 1.00 -2.20 \ ATOM 159 C SER A 22 -4.461 6.663 5.159 1.00 -2.20 \ ATOM 160 O SER A 22 -4.085 5.541 4.866 1.00 -2.20 \ ATOM 161 CB SER A 22 -6.532 7.737 4.304 1.00 -2.20 \ ATOM 162 OG SER A 22 -7.058 6.713 5.127 1.00 -2.20 \ ATOM 163 N LYS A 23 -4.386 7.158 6.371 1.00 0.44 \ ATOM 164 CA LYS A 23 -3.851 6.322 7.402 1.00 0.44 \ ATOM 165 C LYS A 23 -4.835 5.227 7.756 1.00 0.44 \ ATOM 166 O LYS A 23 -4.484 4.097 8.136 1.00 0.44 \ ATOM 167 CB LYS A 23 -3.259 7.038 8.586 1.00 0.44 \ ATOM 168 CG LYS A 23 -4.270 7.581 9.564 1.00 0.44 \ ATOM 169 CD LYS A 23 -3.547 8.146 10.773 1.00 0.44 \ ATOM 170 CE LYS A 23 -4.481 8.850 11.737 1.00 0.44 \ ATOM 171 NZ LYS A 23 -5.618 9.510 11.074 1.00 0.44 \ ATOM 172 N GLU A 24 -6.090 5.591 7.595 1.00 0.44 \ ATOM 173 CA GLU A 24 -7.158 4.654 7.860 1.00 0.44 \ ATOM 174 C GLU A 24 -7.005 3.364 6.994 1.00 0.44 \ ATOM 175 O GLU A 24 -7.099 2.251 7.487 1.00 0.44 \ ATOM 176 CB GLU A 24 -8.486 5.430 7.783 1.00 0.44 \ ATOM 177 CG GLU A 24 -8.713 6.157 9.128 1.00 0.44 \ ATOM 178 CD GLU A 24 -7.819 7.346 9.363 1.00 0.44 \ ATOM 179 OE1 GLU A 24 -7.554 7.989 8.245 1.00 0.44 \ ATOM 180 OE2 GLU A 24 -7.419 7.671 10.477 1.00 0.44 \ ATOM 181 N ALA A 25 -6.710 3.542 5.711 1.00 -2.20 \ ATOM 182 CA ALA A 25 -6.500 2.484 4.750 1.00 -2.20 \ ATOM 183 C ALA A 25 -5.316 1.601 5.163 1.00 -2.20 \ ATOM 184 O ALA A 25 -5.359 0.388 5.125 1.00 -2.20 \ ATOM 185 CB ALA A 25 -6.328 3.105 3.365 1.00 -2.20 \ ATOM 186 N LEU A 26 -4.229 2.223 5.597 1.00 0.44 \ ATOM 187 CA LEU A 26 -3.053 1.450 6.001 1.00 0.44 \ ATOM 188 C LEU A 26 -3.348 0.674 7.273 1.00 0.44 \ ATOM 189 O LEU A 26 -2.856 -0.430 7.520 1.00 0.44 \ ATOM 190 CB LEU A 26 -1.825 2.382 6.250 1.00 0.44 \ ATOM 191 CG LEU A 26 -1.179 2.983 4.990 1.00 0.44 \ ATOM 192 CD1 LEU A 26 -0.239 4.104 5.429 1.00 0.44 \ ATOM 193 CD2 LEU A 26 -0.381 1.941 4.175 1.00 0.44 \ ATOM 194 N ILE A 27 -4.138 1.282 8.139 1.00 0.44 \ ATOM 195 CA ILE A 27 -4.508 0.645 9.396 1.00 0.44 \ ATOM 196 C ILE A 27 -5.395 -0.558 9.091 1.00 0.44 \ ATOM 197 O ILE A 27 -5.298 -1.563 9.782 1.00 0.44 \ ATOM 198 CB ILE A 27 -5.240 1.586 10.346 1.00 0.44 \ ATOM 199 CG1 ILE A 27 -4.298 2.637 10.906 1.00 0.44 \ ATOM 200 CG2 ILE A 27 -5.887 0.828 11.504 1.00 0.44 \ ATOM 201 CD1 ILE A 27 -4.943 3.371 12.073 1.00 0.44 \ ATOM 202 N GLN A 28 -6.224 -0.411 8.056 1.00 -2.20 \ ATOM 203 CA GLN A 28 -7.079 -1.481 7.592 1.00 -2.20 \ ATOM 204 C GLN A 28 -6.281 -2.672 7.048 1.00 -2.20 \ ATOM 205 O GLN A 28 -6.522 -3.825 7.429 1.00 -2.20 \ ATOM 206 CB GLN A 28 -8.583 -1.303 7.398 1.00 -2.20 \ ATOM 207 CG GLN A 28 -9.075 -0.910 5.993 1.00 -2.20 \ ATOM 208 CD GLN A 28 -10.262 -1.768 5.596 1.00 -2.20 \ ATOM 209 OE1 GLN A 28 -10.631 -1.893 4.435 1.00 -2.20 \ ATOM 210 NE2 GLN A 28 -10.881 -2.392 6.579 1.00 -2.20 \ ATOM 211 N ALA A 29 -5.258 -2.347 6.225 1.00 0.44 \ ATOM 212 CA ALA A 29 -4.308 -3.351 5.674 1.00 0.44 \ ATOM 213 C ALA A 29 -3.455 -4.047 6.754 1.00 0.44 \ ATOM 214 O ALA A 29 -3.201 -5.244 6.704 1.00 0.44 \ ATOM 215 CB ALA A 29 -3.415 -2.800 4.586 1.00 0.44 \ ATOM 216 N LEU A 30 -3.004 -3.309 7.745 1.00 0.44 \ ATOM 217 CA LEU A 30 -2.212 -3.898 8.821 1.00 0.44 \ ATOM 218 C LEU A 30 -3.047 -4.842 9.688 1.00 0.44 \ ATOM 219 O LEU A 30 -2.569 -5.854 10.226 1.00 0.44 \ ATOM 220 CB LEU A 30 -1.659 -2.772 9.718 1.00 0.44 \ ATOM 221 CG LEU A 30 -0.383 -3.086 10.505 1.00 0.44 \ ATOM 222 CD1 LEU A 30 0.559 -3.988 9.712 1.00 0.44 \ ATOM 223 CD2 LEU A 30 0.305 -1.791 10.958 1.00 0.44 \ ATOM 224 N GLY A 31 -4.326 -4.473 9.846 1.00 0.44 \ ATOM 225 CA GLY A 31 -5.274 -5.252 10.644 1.00 0.44 \ ATOM 226 C GLY A 31 -5.386 -6.743 10.274 1.00 0.44 \ ATOM 227 O GLY A 31 -5.760 -7.571 11.112 1.00 0.44 \ ATOM 228 N GLU A 32 -5.073 -7.091 9.007 1.00 -1.00 \ ATOM 229 CA GLU A 32 -5.148 -8.464 8.542 1.00 -1.00 \ ATOM 230 C GLU A 32 -4.146 -9.322 9.253 1.00 -1.00 \ ATOM 231 O GLU A 32 -4.007 -10.501 8.937 1.00 -1.00 \ ATOM 232 CB GLU A 32 -4.899 -8.582 7.033 1.00 -1.00 \ ATOM 233 CG GLU A 32 -5.933 -7.840 6.178 1.00 -1.00 \ ATOM 234 CD GLU A 32 -5.786 -8.165 4.721 1.00 -1.00 \ ATOM 235 OE1 GLU A 32 -4.886 -9.094 4.507 1.00 -1.00 \ ATOM 236 OE2 GLU A 32 -6.449 -7.628 3.839 1.00 -1.00 \ ATOM 237 N TRP A 33 -3.421 -8.731 10.193 1.00 -1.00 \ ATOM 238 CA TRP A 33 -2.405 -9.439 10.962 1.00 -1.00 \ ATOM 239 C TRP A 33 -2.806 -9.478 12.428 1.00 -1.00 \ ATOM 240 O TRP A 33 -3.906 -8.966 12.739 1.00 -1.00 \ ATOM 241 CB TRP A 33 -0.996 -8.787 10.824 1.00 -1.00 \ ATOM 242 CG TRP A 33 -0.153 -9.229 9.655 1.00 -1.00 \ ATOM 243 CD1 TRP A 33 0.815 -10.200 9.683 1.00 -1.00 \ ATOM 244 CD2 TRP A 33 -0.176 -8.723 8.302 1.00 -1.00 \ ATOM 245 NE1 TRP A 33 1.370 -10.355 8.444 1.00 -1.00 \ ATOM 246 CE2 TRP A 33 0.796 -9.446 7.575 1.00 -1.00 \ ATOM 247 CE3 TRP A 33 -0.932 -7.764 7.626 1.00 -1.00 \ ATOM 248 CZ2 TRP A 33 1.026 -9.220 6.217 1.00 -1.00 \ ATOM 249 CZ3 TRP A 33 -0.717 -7.544 6.285 1.00 -1.00 \ ATOM 250 CH2 TRP A 33 0.265 -8.262 5.594 1.00 -1.00 \ """, "e2gypA1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e2gypA1_csv", state=0, origin=1) cmd.zoom("e2gypA1_csv", animate=-1)