cmd.read_pdbstr("""\ ATOM 1 N LEU A 7 -15.608 3.883 36.376 1.00 0.58 \ ATOM 2 CA LEU A 7 -16.810 4.208 35.554 1.00 0.58 \ ATOM 3 C LEU A 7 -16.683 5.613 34.955 1.00 0.58 \ ATOM 4 O LEU A 7 -16.177 6.524 35.614 1.00 0.58 \ ATOM 5 CB LEU A 7 -18.078 4.108 36.414 1.00 0.58 \ ATOM 6 CG LEU A 7 -18.318 2.840 37.251 1.00 0.58 \ ATOM 7 CD1 LEU A 7 -19.200 3.110 38.470 1.00 0.58 \ ATOM 8 CD2 LEU A 7 -18.910 1.711 36.415 1.00 0.58 \ ATOM 9 N PRO A 8 -17.161 5.802 33.709 1.00 0.41 \ ATOM 10 CA PRO A 8 -17.148 7.126 33.058 1.00 0.41 \ ATOM 11 C PRO A 8 -17.861 8.239 33.866 1.00 0.41 \ ATOM 12 O PRO A 8 -18.660 7.933 34.762 1.00 0.41 \ ATOM 13 CB PRO A 8 -17.876 6.870 31.735 1.00 0.41 \ ATOM 14 CG PRO A 8 -17.712 5.400 31.484 1.00 0.41 \ ATOM 15 CD PRO A 8 -17.746 4.767 32.836 1.00 0.41 \ ATOM 16 N PRO A 9 -17.565 9.524 33.559 1.00 -0.79 \ ATOM 17 CA PRO A 9 -18.071 10.666 34.340 1.00 -0.79 \ ATOM 18 C PRO A 9 -19.543 10.582 34.760 1.00 -0.79 \ ATOM 19 O PRO A 9 -20.446 10.623 33.898 1.00 -0.79 \ ATOM 20 CB PRO A 9 -17.841 11.861 33.400 1.00 -0.79 \ ATOM 21 CG PRO A 9 -16.607 11.479 32.656 1.00 -0.79 \ ATOM 22 CD PRO A 9 -16.716 9.975 32.439 1.00 -0.79 \ ATOM 23 N GLY A 10 -19.756 10.444 36.073 1.00 -0.48 \ ATOM 24 CA GLY A 10 -21.083 10.556 36.682 1.00 -0.48 \ ATOM 25 C GLY A 10 -21.827 9.274 37.034 1.00 -0.48 \ ATOM 26 O GLY A 10 -23.003 9.331 37.376 1.00 -0.48 \ ATOM 27 N TRP A 11 -21.140 8.135 36.979 1.00 2.12 \ ATOM 28 CA TRP A 11 -21.788 6.822 37.184 1.00 2.12 \ ATOM 29 C TRP A 11 -21.646 6.254 38.583 1.00 2.12 \ ATOM 30 O TRP A 11 -20.603 6.388 39.229 1.00 2.12 \ ATOM 31 CB TRP A 11 -21.281 5.782 36.180 1.00 2.12 \ ATOM 32 CG TRP A 11 -21.698 6.047 34.791 1.00 2.12 \ ATOM 33 CD1 TRP A 11 -20.956 6.652 33.821 1.00 2.12 \ ATOM 34 CD2 TRP A 11 -22.954 5.714 34.180 1.00 2.12 \ ATOM 35 NE1 TRP A 11 -21.664 6.731 32.660 1.00 2.12 \ ATOM 36 CE2 TRP A 11 -22.892 6.149 32.839 1.00 2.12 \ ATOM 37 CE3 TRP A 11 -24.128 5.083 34.632 1.00 2.12 \ ATOM 38 CZ2 TRP A 11 -23.964 5.993 31.939 1.00 2.12 \ ATOM 39 CZ3 TRP A 11 -25.198 4.915 33.727 1.00 2.12 \ ATOM 40 CH2 TRP A 11 -25.106 5.369 32.399 1.00 2.12 \ ATOM 41 N GLU A 12 -22.708 5.591 39.034 1.00 -0.42 \ ATOM 42 CA GLU A 12 -22.697 4.859 40.282 1.00 -0.42 \ ATOM 43 C GLU A 12 -23.439 3.550 40.072 1.00 -0.42 \ ATOM 44 O GLU A 12 -24.328 3.460 39.209 1.00 -0.42 \ ATOM 45 CB GLU A 12 -23.325 5.669 41.434 1.00 -0.42 \ ATOM 46 CG GLU A 12 -24.864 5.653 41.501 1.00 -0.42 \ ATOM 47 CD GLU A 12 -25.446 6.647 42.511 1.00 -0.42 \ ATOM 48 OE1 GLU A 12 -25.333 7.878 42.297 1.00 -0.42 \ ATOM 49 OE2 GLU A 12 -26.047 6.193 43.514 1.00 -0.42 \ ATOM 50 N LYS A 13 -23.037 2.549 40.846 1.00 -0.52 \ ATOM 51 CA LYS A 13 -23.721 1.260 40.921 1.00 -0.52 \ ATOM 52 C LYS A 13 -24.933 1.422 41.823 1.00 -0.52 \ ATOM 53 O LYS A 13 -24.866 2.107 42.853 1.00 -0.52 \ ATOM 54 CB LYS A 13 -22.761 0.196 41.491 1.00 -0.52 \ ATOM 55 CG LYS A 13 -23.279 -1.249 41.475 1.00 -0.52 \ ATOM 56 CD LYS A 13 -22.138 -2.261 41.721 1.00 -0.52 \ ATOM 57 CE LYS A 13 -21.288 -2.502 40.468 1.00 -0.52 \ ATOM 58 NZ LYS A 13 -20.196 -3.499 40.713 1.00 -0.52 \ ATOM 59 N ALA A 14 -26.047 0.802 41.435 1.00 -0.61 \ ATOM 60 CA ALA A 14 -27.240 0.790 42.262 1.00 -0.61 \ ATOM 61 C ALA A 14 -27.870 -0.605 42.213 1.00 -0.61 \ ATOM 62 O ALA A 14 -27.362 -1.490 41.529 1.00 -0.61 \ ATOM 63 CB ALA A 14 -28.221 1.849 41.803 1.00 -0.61 \ ATOM 64 N MET A 15 -28.960 -0.787 42.948 1.00 -0.78 \ ATOM 65 CA MET A 15 -29.668 -2.067 42.990 1.00 -0.78 \ ATOM 66 C MET A 15 -31.139 -1.835 42.714 1.00 -0.78 \ ATOM 67 O MET A 15 -31.765 -0.964 43.327 1.00 -0.78 \ ATOM 68 CB MET A 15 -29.507 -2.714 44.367 1.00 -0.78 \ ATOM 69 CG MET A 15 -29.868 -4.196 44.423 1.00 -0.78 \ ATOM 70 SD MET A 15 -28.383 -5.159 44.757 1.00 -0.78 \ ATOM 71 CE MET A 15 -27.864 -4.436 46.312 1.00 -0.78 \ ATOM 72 N SER A 16 -31.698 -2.599 41.778 1.00 -0.03 \ ATOM 73 CA SER A 16 -33.120 -2.482 41.472 1.00 -0.03 \ ATOM 74 C SER A 16 -33.960 -2.792 42.711 1.00 -0.03 \ ATOM 75 O SER A 16 -33.783 -3.842 43.347 1.00 -0.03 \ ATOM 76 CB SER A 16 -33.520 -3.429 40.337 1.00 -0.03 \ ATOM 77 OG SER A 16 -34.936 -3.469 40.197 1.00 -0.03 \ ATOM 78 N ARG A 17 -34.857 -1.876 43.056 1.00 -0.74 \ ATOM 79 CA ARG A 17 -35.767 -2.105 44.181 1.00 -0.74 \ ATOM 80 C ARG A 17 -36.811 -3.185 43.898 1.00 -0.74 \ ATOM 81 O ARG A 17 -37.291 -3.842 44.824 1.00 -0.74 \ ATOM 82 CB ARG A 17 -36.439 -0.803 44.641 1.00 -0.74 \ ATOM 83 CG ARG A 17 -35.879 -0.269 45.956 1.00 -0.74 \ ATOM 84 CD ARG A 17 -36.329 1.169 46.205 1.00 -0.74 \ ATOM 85 NE ARG A 17 -35.416 1.926 47.074 1.00 -0.74 \ ATOM 86 CZ ARG A 17 -34.135 2.173 46.791 1.00 -0.74 \ ATOM 87 NH1 ARG A 17 -33.568 1.706 45.677 1.00 -0.74 \ ATOM 88 NH2 ARG A 17 -33.404 2.875 47.629 1.00 -0.74 \ ATOM 89 N SER A 18 -37.152 -3.387 42.627 1.00 -0.74 \ ATOM 90 CA SER A 18 -38.177 -4.382 42.289 1.00 -0.74 \ ATOM 91 C SER A 18 -37.601 -5.779 42.028 1.00 -0.74 \ ATOM 92 O SER A 18 -38.295 -6.780 42.255 1.00 -0.74 \ ATOM 93 CB SER A 18 -39.064 -3.913 41.129 1.00 -0.74 \ ATOM 94 OG SER A 18 -38.290 -3.635 39.969 1.00 -0.74 \ ATOM 95 N SER A 19 -36.335 -5.848 41.608 1.00 -1.00 \ ATOM 96 CA SER A 19 -35.694 -7.117 41.222 1.00 -1.00 \ ATOM 97 C SER A 19 -34.427 -7.523 41.990 1.00 -1.00 \ ATOM 98 O SER A 19 -34.101 -8.704 42.039 1.00 -1.00 \ ATOM 99 CB SER A 19 -35.403 -7.143 39.714 1.00 -1.00 \ ATOM 100 OG SER A 19 -34.114 -6.621 39.417 1.00 -1.00 \ ATOM 101 N GLY A 20 -33.706 -6.558 42.568 1.00 -0.06 \ ATOM 102 CA GLY A 20 -32.465 -6.851 43.294 1.00 -0.06 \ ATOM 103 C GLY A 20 -31.207 -6.913 42.434 1.00 -0.06 \ ATOM 104 O GLY A 20 -30.085 -7.020 42.939 1.00 -0.06 \ ATOM 105 N ARG A 21 -31.387 -6.826 41.121 1.00 -0.71 \ ATOM 106 CA ARG A 21 -30.269 -6.891 40.203 1.00 -0.71 \ ATOM 107 C ARG A 21 -29.557 -5.532 40.147 1.00 -0.71 \ ATOM 108 O ARG A 21 -30.206 -4.476 40.221 1.00 -0.71 \ ATOM 109 CB ARG A 21 -30.780 -7.310 38.821 1.00 -0.71 \ ATOM 110 CG ARG A 21 -29.726 -7.469 37.748 1.00 -0.71 \ ATOM 111 CD ARG A 21 -30.169 -8.458 36.678 1.00 -0.71 \ ATOM 112 NE ARG A 21 -31.596 -8.362 36.419 1.00 -0.71 \ ATOM 113 CZ ARG A 21 -32.149 -7.725 35.393 1.00 -0.71 \ ATOM 114 NH1 ARG A 21 -31.409 -7.112 34.462 1.00 -0.71 \ ATOM 115 NH2 ARG A 21 -33.467 -7.742 35.286 1.00 -0.71 \ ATOM 116 N VAL A 22 -28.237 -5.584 40.024 1.00 -0.70 \ ATOM 117 CA VAL A 22 -27.424 -4.374 39.953 1.00 -0.70 \ ATOM 118 C VAL A 22 -27.694 -3.628 38.639 1.00 -0.70 \ ATOM 119 O VAL A 22 -27.929 -4.237 37.585 1.00 -0.70 \ ATOM 120 CB VAL A 22 -25.907 -4.645 40.116 1.00 -0.70 \ ATOM 121 CG1 VAL A 22 -25.617 -5.347 41.461 1.00 -0.70 \ ATOM 122 CG2 VAL A 22 -25.341 -5.441 38.952 1.00 -0.70 \ ATOM 123 N TYR A 23 -27.688 -2.302 38.718 1.00 1.43 \ ATOM 124 CA TYR A 23 -27.748 -1.486 37.511 1.00 1.43 \ ATOM 125 C TYR A 23 -26.859 -0.280 37.696 1.00 1.43 \ ATOM 126 O TYR A 23 -26.225 -0.141 38.737 1.00 1.43 \ ATOM 127 CB TYR A 23 -29.181 -1.087 37.184 1.00 1.43 \ ATOM 128 CG TYR A 23 -29.832 -0.066 38.096 1.00 1.43 \ ATOM 129 CD1 TYR A 23 -30.390 -0.439 39.318 1.00 1.43 \ ATOM 130 CD2 TYR A 23 -29.939 1.278 37.709 1.00 1.43 \ ATOM 131 CE1 TYR A 23 -31.012 0.490 40.140 1.00 1.43 \ ATOM 132 CE2 TYR A 23 -30.553 2.223 38.519 1.00 1.43 \ ATOM 133 CZ TYR A 23 -31.090 1.824 39.740 1.00 1.43 \ ATOM 134 OH TYR A 23 -31.715 2.734 40.563 1.00 1.43 \ ATOM 135 N TYR A 24 -26.813 0.569 36.674 1.00 1.92 \ ATOM 136 CA TYR A 24 -25.961 1.765 36.704 1.00 1.92 \ ATOM 137 C TYR A 24 -26.794 3.014 36.437 1.00 1.92 \ ATOM 138 O TYR A 24 -27.697 3.009 35.604 1.00 1.92 \ ATOM 139 CB TYR A 24 -24.782 1.604 35.736 1.00 1.92 \ ATOM 140 CG TYR A 24 -23.976 0.365 36.067 1.00 1.92 \ ATOM 141 CD1 TYR A 24 -24.342 -0.884 35.540 1.00 1.92 \ ATOM 142 CD2 TYR A 24 -22.908 0.423 36.961 1.00 1.92 \ ATOM 143 CE1 TYR A 24 -23.636 -2.037 35.871 1.00 1.92 \ ATOM 144 CE2 TYR A 24 -22.176 -0.722 37.296 1.00 1.92 \ ATOM 145 CZ TYR A 24 -22.548 -1.949 36.748 1.00 1.92 \ ATOM 146 OH TYR A 24 -21.843 -3.089 37.073 1.00 1.92 \ ATOM 147 N PHE A 25 -26.492 4.062 37.199 1.00 -0.07 \ ATOM 148 CA PHE A 25 -27.193 5.338 37.142 1.00 -0.07 \ ATOM 149 C PHE A 25 -26.164 6.455 36.994 1.00 -0.07 \ ATOM 150 O PHE A 25 -25.099 6.406 37.624 1.00 -0.07 \ ATOM 151 CB PHE A 25 -27.992 5.549 38.438 1.00 -0.07 \ ATOM 152 CG PHE A 25 -28.580 6.914 38.560 1.00 -0.07 \ ATOM 153 CD1 PHE A 25 -29.601 7.325 37.693 1.00 -0.07 \ ATOM 154 CD2 PHE A 25 -28.086 7.816 39.495 1.00 -0.07 \ ATOM 155 CE1 PHE A 25 -30.151 8.619 37.780 1.00 -0.07 \ ATOM 156 CE2 PHE A 25 -28.645 9.113 39.589 1.00 -0.07 \ ATOM 157 CZ PHE A 25 -29.677 9.499 38.715 1.00 -0.07 \ ATOM 158 N ASN A 26 -26.495 7.451 36.171 1.00 1.17 \ ATOM 159 CA ASN A 26 -25.630 8.613 35.960 1.00 1.17 \ ATOM 160 C ASN A 26 -26.347 9.848 36.506 1.00 1.17 \ ATOM 161 O ASN A 26 -27.425 10.204 36.052 1.00 1.17 \ ATOM 162 CB ASN A 26 -25.297 8.752 34.462 1.00 1.17 \ ATOM 163 CG ASN A 26 -24.285 9.839 34.191 1.00 1.17 \ ATOM 164 OD1 ASN A 26 -24.525 10.990 34.539 1.00 1.17 \ ATOM 165 ND2 ASN A 26 -23.155 9.477 33.594 1.00 1.17 \ ATOM 166 N HIS A 27 -25.759 10.494 37.519 1.00 -0.56 \ ATOM 167 CA HIS A 27 -26.417 11.600 38.204 1.00 -0.56 \ ATOM 168 C HIS A 27 -26.267 12.944 37.467 1.00 -0.56 \ ATOM 169 O HIS A 27 -26.802 13.941 37.910 1.00 -0.56 \ ATOM 170 CB HIS A 27 -25.902 11.740 39.645 1.00 -0.56 \ ATOM 171 CG HIS A 27 -24.450 12.100 39.729 1.00 -0.56 \ ATOM 172 ND1 HIS A 27 -23.992 13.400 39.648 1.00 -0.56 \ ATOM 173 CD2 HIS A 27 -23.351 11.324 39.880 1.00 -0.56 \ ATOM 174 CE1 HIS A 27 -22.675 13.407 39.749 1.00 -0.56 \ ATOM 175 NE2 HIS A 27 -22.260 12.161 39.878 1.00 -0.56 \ ATOM 176 N ILE A 28 -25.563 12.923 36.341 1.00 -0.85 \ ATOM 177 CA ILE A 28 -25.425 14.102 35.483 1.00 -0.85 \ ATOM 178 C ILE A 28 -26.438 14.071 34.337 1.00 -0.85 \ ATOM 179 O ILE A 28 -27.022 15.085 33.999 1.00 -0.85 \ ATOM 180 CB ILE A 28 -24.004 14.208 34.909 1.00 -0.85 \ ATOM 181 CG1 ILE A 28 -22.942 14.212 36.018 1.00 -0.85 \ ATOM 182 CG2 ILE A 28 -23.838 15.487 34.043 1.00 -0.85 \ ATOM 183 CD1 ILE A 28 -21.518 14.093 35.514 1.00 -0.85 \ """, "e2q5aA3_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e2q5aA3_csv", state=0, origin=1) cmd.zoom("e2q5aA3_csv", animate=-1)