cmd.read_pdbstr("""\ ATOM 1 N GLY L 9 67.411 10.515 -16.780 1.00 -1.00 \ ATOM 2 CA GLY L 9 66.728 11.826 -16.650 1.00 -1.00 \ ATOM 3 C GLY L 9 65.806 11.899 -15.449 1.00 -1.00 \ ATOM 4 O GLY L 9 66.262 11.969 -14.306 1.00 -1.00 \ ATOM 5 N THR L 10 64.503 11.872 -15.706 1.00 -1.00 \ ATOM 6 CA THR L 10 63.521 11.953 -14.633 1.00 -1.00 \ ATOM 7 C THR L 10 63.089 10.577 -14.121 1.00 -1.00 \ ATOM 8 O THR L 10 62.065 10.448 -13.451 1.00 -1.00 \ ATOM 9 CB THR L 10 62.273 12.759 -15.085 1.00 -1.00 \ ATOM 10 OG1 THR L 10 61.557 13.221 -13.933 1.00 -1.00 \ ATOM 11 CG2 THR L 10 61.349 11.896 -15.932 1.00 -1.00 \ ATOM 12 N ARG L 11 63.872 9.550 -14.446 1.00 0.82 \ ATOM 13 CA ARG L 11 63.584 8.191 -13.990 1.00 0.82 \ ATOM 14 C ARG L 11 64.128 8.082 -12.573 1.00 0.82 \ ATOM 15 O ARG L 11 63.646 7.295 -11.758 1.00 0.82 \ ATOM 16 CB ARG L 11 64.281 7.151 -14.877 1.00 0.82 \ ATOM 17 CG ARG L 11 64.191 5.727 -14.328 1.00 0.82 \ ATOM 18 CD ARG L 11 65.362 4.843 -14.762 1.00 0.82 \ ATOM 19 NE ARG L 11 65.100 4.071 -15.975 1.00 0.82 \ ATOM 20 CZ ARG L 11 65.049 4.582 -17.201 1.00 0.82 \ ATOM 21 NH1 ARG L 11 65.244 5.880 -17.390 1.00 0.82 \ ATOM 22 NH2 ARG L 11 64.809 3.792 -18.240 1.00 0.82 \ ATOM 23 N ARG L 12 65.149 8.887 -12.302 1.00 0.82 \ ATOM 24 CA ARG L 12 65.800 8.923 -11.000 1.00 0.82 \ ATOM 25 C ARG L 12 65.074 9.908 -10.095 1.00 0.82 \ ATOM 26 O ARG L 12 64.972 9.695 -8.889 1.00 0.82 \ ATOM 27 CB ARG L 12 67.262 9.349 -11.160 1.00 0.82 \ ATOM 28 CG ARG L 12 68.049 9.424 -9.859 1.00 0.82 \ ATOM 29 CD ARG L 12 69.364 10.151 -10.072 1.00 0.82 \ ATOM 30 NE ARG L 12 69.132 11.526 -10.503 1.00 0.82 \ ATOM 31 CZ ARG L 12 70.087 12.375 -10.871 1.00 0.82 \ ATOM 32 NH1 ARG L 12 71.358 11.997 -10.865 1.00 0.82 \ ATOM 33 NH2 ARG L 12 69.765 13.606 -11.247 1.00 0.82 \ ATOM 34 N ASP L 13 64.574 10.993 -10.679 1.00 0.82 \ ATOM 35 CA ASP L 13 63.855 11.989 -9.899 1.00 0.82 \ ATOM 36 C ASP L 13 62.464 11.447 -9.600 1.00 0.82 \ ATOM 37 O ASP L 13 61.745 11.979 -8.758 1.00 0.82 \ ATOM 38 CB ASP L 13 63.752 13.315 -10.656 1.00 0.82 \ ATOM 39 CG ASP L 13 63.275 14.453 -9.767 1.00 0.82 \ ATOM 40 OD1 ASP L 13 64.002 14.810 -8.814 1.00 0.82 \ ATOM 41 OD2 ASP L 13 62.172 14.986 -10.017 1.00 0.82 \ ATOM 42 N PHE L 14 62.088 10.391 -10.317 1.00 0.82 \ ATOM 43 CA PHE L 14 60.807 9.729 -10.109 1.00 0.82 \ ATOM 44 C PHE L 14 61.103 8.728 -9.010 1.00 0.82 \ ATOM 45 O PHE L 14 60.347 8.572 -8.051 1.00 0.82 \ ATOM 46 CB PHE L 14 60.375 8.963 -11.362 1.00 0.82 \ ATOM 47 CG PHE L 14 59.628 7.688 -11.063 1.00 0.82 \ ATOM 48 CD1 PHE L 14 58.300 7.722 -10.648 1.00 0.82 \ ATOM 49 CD2 PHE L 14 60.273 6.456 -11.144 1.00 0.82 \ ATOM 50 CE1 PHE L 14 57.626 6.547 -10.314 1.00 0.82 \ ATOM 51 CE2 PHE L 14 59.609 5.278 -10.812 1.00 0.82 \ ATOM 52 CZ PHE L 14 58.285 5.323 -10.396 1.00 0.82 \ ATOM 53 N LEU L 15 62.230 8.049 -9.188 1.00 -0.76 \ ATOM 54 CA LEU L 15 62.716 7.044 -8.262 1.00 -0.76 \ ATOM 55 C LEU L 15 62.670 7.619 -6.854 1.00 -0.76 \ ATOM 56 O LEU L 15 62.242 6.954 -5.911 1.00 -0.76 \ ATOM 57 CB LEU L 15 64.151 6.671 -8.641 1.00 -0.76 \ ATOM 58 CG LEU L 15 64.844 5.477 -7.987 1.00 -0.76 \ ATOM 59 CD1 LEU L 15 64.060 4.206 -8.255 1.00 -0.76 \ ATOM 60 CD2 LEU L 15 66.254 5.359 -8.542 1.00 -0.76 \ ATOM 61 N TYR L 16 63.108 8.868 -6.728 1.00 0.82 \ ATOM 62 CA TYR L 16 63.118 9.564 -5.448 1.00 0.82 \ ATOM 63 C TYR L 16 61.726 9.577 -4.843 1.00 0.82 \ ATOM 64 O TYR L 16 61.551 9.274 -3.662 1.00 0.82 \ ATOM 65 CB TYR L 16 63.601 11.005 -5.635 1.00 0.82 \ ATOM 66 CG TYR L 16 65.101 11.155 -5.749 1.00 0.82 \ ATOM 67 CD1 TYR L 16 65.897 10.102 -6.205 1.00 0.82 \ ATOM 68 CD2 TYR L 16 65.724 12.361 -5.420 1.00 0.82 \ ATOM 69 CE1 TYR L 16 67.270 10.244 -6.331 1.00 0.82 \ ATOM 70 CE2 TYR L 16 67.099 12.516 -5.544 1.00 0.82 \ ATOM 71 CZ TYR L 16 67.864 11.452 -5.999 1.00 0.82 \ ATOM 72 OH TYR L 16 69.223 11.594 -6.126 1.00 0.82 \ ATOM 73 N TYR L 17 60.732 9.923 -5.653 1.00 -0.77 \ ATOM 74 CA TYR L 17 59.372 9.975 -5.154 1.00 -0.77 \ ATOM 75 C TYR L 17 58.795 8.593 -4.883 1.00 -0.77 \ ATOM 76 O TYR L 17 58.149 8.392 -3.857 1.00 -0.77 \ ATOM 77 CB TYR L 17 58.495 10.805 -6.093 1.00 -0.77 \ ATOM 78 CG TYR L 17 58.700 12.284 -5.842 1.00 -0.77 \ ATOM 79 CD1 TYR L 17 58.191 12.887 -4.690 1.00 -0.77 \ ATOM 80 CD2 TYR L 17 59.486 13.057 -6.698 1.00 -0.77 \ ATOM 81 CE1 TYR L 17 58.466 14.217 -4.391 1.00 -0.77 \ ATOM 82 CE2 TYR L 17 59.770 14.387 -6.409 1.00 -0.77 \ ATOM 83 CZ TYR L 17 59.259 14.961 -5.253 1.00 -0.77 \ ATOM 84 OH TYR L 17 59.554 16.272 -4.952 1.00 -0.77 \ ATOM 85 N ALA L 18 59.051 7.630 -5.764 1.00 0.82 \ ATOM 86 CA ALA L 18 58.561 6.272 -5.543 1.00 0.82 \ ATOM 87 C ALA L 18 59.150 5.756 -4.231 1.00 0.82 \ ATOM 88 O ALA L 18 58.501 5.017 -3.490 1.00 0.82 \ ATOM 89 CB ALA L 18 58.979 5.367 -6.692 1.00 0.82 \ ATOM 90 N THR L 19 60.391 6.148 -3.960 1.00 0.82 \ ATOM 91 CA THR L 19 61.084 5.754 -2.740 1.00 0.82 \ ATOM 92 C THR L 19 60.511 6.515 -1.549 1.00 0.82 \ ATOM 93 O THR L 19 59.902 5.919 -0.659 1.00 0.82 \ ATOM 94 CB THR L 19 62.604 6.032 -2.851 1.00 0.82 \ ATOM 95 OG1 THR L 19 63.212 5.027 -3.674 1.00 0.82 \ ATOM 96 CG2 THR L 19 63.263 6.032 -1.479 1.00 0.82 \ ATOM 97 N ALA L 20 60.695 7.833 -1.548 1.00 -0.76 \ ATOM 98 CA ALA L 20 60.197 8.690 -0.473 1.00 -0.76 \ ATOM 99 C ALA L 20 58.753 8.343 -0.118 1.00 -0.76 \ ATOM 100 O ALA L 20 58.379 8.335 1.055 1.00 -0.76 \ ATOM 101 CB ALA L 20 60.300 10.158 -0.886 1.00 -0.76 \ ATOM 102 N GLY L 21 57.950 8.059 -1.141 1.00 -0.77 \ ATOM 103 CA GLY L 21 56.557 7.709 -0.928 1.00 -0.77 \ ATOM 104 C GLY L 21 56.411 6.367 -0.239 1.00 -0.77 \ ATOM 105 O GLY L 21 55.625 6.221 0.699 1.00 -0.77 \ ATOM 106 N ALA L 22 57.166 5.379 -0.709 1.00 -1.75 \ ATOM 107 CA ALA L 22 57.131 4.049 -0.117 1.00 -1.75 \ ATOM 108 C ALA L 22 57.533 4.181 1.346 1.00 -1.75 \ ATOM 109 O ALA L 22 56.948 3.546 2.226 1.00 -1.75 \ ATOM 110 CB ALA L 22 58.096 3.122 -0.847 1.00 -1.75 \ ATOM 111 N GLY L 23 58.539 5.014 1.594 1.00 0.82 \ ATOM 112 CA GLY L 23 58.993 5.230 2.951 1.00 0.82 \ ATOM 113 C GLY L 23 57.846 5.725 3.810 1.00 0.82 \ ATOM 114 O GLY L 23 57.382 5.021 4.709 1.00 0.82 \ ATOM 115 N ALA L 24 57.377 6.936 3.519 1.00 -0.81 \ ATOM 116 CA ALA L 24 56.280 7.543 4.264 1.00 -0.81 \ ATOM 117 C ALA L 24 55.130 6.569 4.501 1.00 -0.81 \ ATOM 118 O ALA L 24 54.496 6.596 5.554 1.00 -0.81 \ ATOM 119 CB ALA L 24 55.770 8.780 3.532 1.00 -0.81 \ ATOM 120 N VAL L 25 54.860 5.711 3.523 1.00 0.82 \ ATOM 121 CA VAL L 25 53.786 4.732 3.660 1.00 0.82 \ ATOM 122 C VAL L 25 54.091 3.777 4.809 1.00 0.82 \ ATOM 123 O VAL L 25 53.241 3.529 5.668 1.00 0.82 \ ATOM 124 CB VAL L 25 53.602 3.892 2.375 1.00 0.82 \ ATOM 125 CG1 VAL L 25 52.627 2.763 2.638 1.00 0.82 \ ATOM 126 CG2 VAL L 25 53.081 4.761 1.245 1.00 0.82 \ ATOM 127 N ALA L 26 55.308 3.241 4.807 1.00 -0.81 \ ATOM 128 CA ALA L 26 55.741 2.316 5.845 1.00 -0.81 \ ATOM 129 C ALA L 26 55.756 3.023 7.192 1.00 -0.81 \ ATOM 130 O ALA L 26 55.192 2.527 8.171 1.00 -0.81 \ ATOM 131 CB ALA L 26 57.132 1.782 5.526 1.00 -0.81 \ ATOM 132 N THR L 27 56.398 4.188 7.223 1.00 -0.80 \ ATOM 133 CA THR L 27 56.511 4.996 8.433 1.00 -0.80 \ ATOM 134 C THR L 27 55.174 5.133 9.144 1.00 -0.80 \ ATOM 135 O THR L 27 55.115 5.211 10.374 1.00 -0.80 \ ATOM 136 CB THR L 27 57.023 6.413 8.116 1.00 -0.80 \ ATOM 137 OG1 THR L 27 58.246 6.325 7.370 1.00 -0.80 \ ATOM 138 CG2 THR L 27 57.275 7.184 9.399 1.00 -0.80 \ ATOM 139 N GLY L 28 54.100 5.166 8.360 1.00 0.82 \ ATOM 140 CA GLY L 28 52.762 5.305 8.912 1.00 0.82 \ ATOM 141 C GLY L 28 52.173 3.979 9.342 1.00 0.82 \ ATOM 142 O GLY L 28 51.450 3.910 10.339 1.00 0.82 \ ATOM 143 N ALA L 29 52.469 2.927 8.584 1.00 -1.72 \ ATOM 144 CA ALA L 29 51.977 1.595 8.914 1.00 -1.72 \ ATOM 145 C ALA L 29 52.592 1.198 10.247 1.00 -1.72 \ ATOM 146 O ALA L 29 52.019 0.414 11.007 1.00 -1.72 \ ATOM 147 CB ALA L 29 52.383 0.605 7.833 1.00 -1.72 \ ATOM 148 N ALA L 30 53.769 1.751 10.514 1.00 0.82 \ ATOM 149 CA ALA L 30 54.490 1.480 11.745 1.00 0.82 \ ATOM 150 C ALA L 30 53.851 2.251 12.889 1.00 0.82 \ ATOM 151 O ALA L 30 53.473 1.676 13.910 1.00 0.82 \ ATOM 152 CB ALA L 30 55.953 1.895 11.593 1.00 0.82 \ ATOM 153 N VAL L 31 53.706 3.556 12.690 1.00 -1.72 \ ATOM 154 CA VAL L 31 53.142 4.451 13.691 1.00 -1.72 \ ATOM 155 C VAL L 31 51.709 4.170 14.130 1.00 -1.72 \ ATOM 156 O VAL L 31 51.447 4.074 15.329 1.00 -1.72 \ ATOM 157 CB VAL L 31 53.243 5.924 13.223 1.00 -1.72 \ ATOM 158 CG1 VAL L 31 52.497 6.837 14.190 1.00 -1.72 \ ATOM 159 CG2 VAL L 31 54.710 6.342 13.146 1.00 -1.72 \ ATOM 160 N TRP L 32 50.782 4.036 13.183 1.00 0.82 \ ATOM 161 CA TRP L 32 49.383 3.801 13.539 1.00 0.82 \ ATOM 162 C TRP L 32 49.161 2.785 14.657 1.00 0.82 \ ATOM 163 O TRP L 32 48.412 3.054 15.603 1.00 0.82 \ ATOM 164 CB TRP L 32 48.562 3.383 12.311 1.00 0.82 \ ATOM 165 CG TRP L 32 47.177 2.881 12.682 1.00 0.82 \ ATOM 166 CD1 TRP L 32 46.626 1.677 12.338 1.00 0.82 \ ATOM 167 CD2 TRP L 32 46.210 3.540 13.515 1.00 0.82 \ ATOM 168 NE1 TRP L 32 45.388 1.543 12.905 1.00 0.82 \ ATOM 169 CE2 TRP L 32 45.104 2.667 13.635 1.00 0.82 \ ATOM 170 CE3 TRP L 32 46.171 4.778 14.173 1.00 0.82 \ ATOM 171 CZ2 TRP L 32 43.965 2.989 14.390 1.00 0.82 \ ATOM 172 CZ3 TRP L 32 45.039 5.103 14.925 1.00 0.82 \ ATOM 173 CH2 TRP L 32 43.948 4.208 15.028 1.00 0.82 \ ATOM 174 N PRO L 33 49.786 1.594 14.568 1.00 0.82 \ ATOM 175 CA PRO L 33 49.567 0.621 15.647 1.00 0.82 \ ATOM 176 C PRO L 33 50.187 1.001 16.984 1.00 0.82 \ ATOM 177 O PRO L 33 49.685 0.608 18.033 1.00 0.82 \ ATOM 178 CB PRO L 33 50.134 -0.675 15.074 1.00 0.82 \ ATOM 179 CG PRO L 33 51.227 -0.190 14.192 1.00 0.82 \ ATOM 180 CD PRO L 33 50.633 1.028 13.506 1.00 0.82 \ ATOM 181 N LEU L 34 51.282 1.752 16.953 1.00 -1.00 \ ATOM 182 CA LEU L 34 51.887 2.181 18.201 1.00 -1.00 \ ATOM 183 C LEU L 34 50.822 3.017 18.899 1.00 -1.00 \ ATOM 184 O LEU L 34 50.630 2.933 20.117 1.00 -1.00 \ ATOM 185 CB LEU L 34 53.140 3.015 17.920 1.00 -1.00 \ ATOM 186 CG LEU L 34 54.301 2.197 17.350 1.00 -1.00 \ ATOM 187 CD1 LEU L 34 55.497 3.084 17.058 1.00 -1.00 \ ATOM 188 CD2 LEU L 34 54.681 1.133 18.365 1.00 -1.00 \ ATOM 189 N ILE L 35 50.113 3.806 18.102 1.00 -1.00 \ ATOM 190 CA ILE L 35 49.044 4.652 18.605 1.00 -1.00 \ ATOM 191 C ILE L 35 47.816 3.818 18.953 1.00 -1.00 \ ATOM 192 O ILE L 35 47.261 3.932 20.049 1.00 -1.00 \ ATOM 193 CB ILE L 35 48.622 5.711 17.558 1.00 -1.00 \ ATOM 194 CG1 ILE L 35 49.692 6.797 17.439 1.00 -1.00 \ ATOM 195 CG2 ILE L 35 47.270 6.301 17.938 1.00 -1.00 \ ATOM 196 CD1 ILE L 35 49.320 7.918 16.462 1.00 -1.00 \ ATOM 197 N ASN L 36 47.402 2.962 18.028 1.00 -1.00 \ ATOM 198 CA ASN L 36 46.206 2.150 18.227 1.00 -1.00 \ ATOM 199 C ASN L 36 46.215 1.132 19.370 1.00 -1.00 \ ATOM 200 O ASN L 36 45.152 0.698 19.811 1.00 -1.00 \ ATOM 201 CB ASN L 36 45.832 1.426 16.933 1.00 -1.00 \ ATOM 202 CG ASN L 36 44.423 0.867 16.981 1.00 -1.00 \ ATOM 203 OD1 ASN L 36 44.194 -0.313 16.709 1.00 -1.00 \ ATOM 204 ND2 ASN L 36 43.462 1.725 17.338 1.00 -1.00 \ ATOM 205 N GLN L 37 47.387 0.729 19.846 1.00 -1.00 \ ATOM 206 CA GLN L 37 47.417 -0.233 20.945 1.00 -1.00 \ ATOM 207 C GLN L 37 46.734 0.319 22.188 1.00 -1.00 \ ATOM 208 O GLN L 37 46.209 -0.437 23.014 1.00 -1.00 \ ATOM 209 CB GLN L 37 48.856 -0.660 21.277 1.00 -1.00 \ ATOM 210 CG GLN L 37 49.895 0.470 21.420 1.00 -1.00 \ ATOM 211 CD GLN L 37 49.917 1.108 22.800 1.00 -1.00 \ ATOM 212 OE1 GLN L 37 49.464 0.515 23.783 1.00 -1.00 \ ATOM 213 NE2 GLN L 37 50.462 2.316 22.882 1.00 -1.00 \ ATOM 214 N MET L 38 46.724 1.644 22.305 1.00 -1.00 \ ATOM 215 CA MET L 38 46.129 2.305 23.460 1.00 -1.00 \ ATOM 216 C MET L 38 44.623 2.442 23.407 1.00 -1.00 \ ATOM 217 O MET L 38 44.008 2.889 24.376 1.00 -1.00 \ ATOM 218 CB MET L 38 46.761 3.679 23.665 1.00 -1.00 \ ATOM 219 CG MET L 38 48.083 3.636 24.407 1.00 -1.00 \ ATOM 220 SD MET L 38 48.934 5.223 24.396 1.00 -1.00 \ ATOM 221 CE MET L 38 47.932 6.157 25.551 1.00 -1.00 \ ATOM 222 N ASN L 39 44.011 2.065 22.293 1.00 -1.00 \ ATOM 223 CA ASN L 39 42.560 2.170 22.221 1.00 -1.00 \ ATOM 224 C ASN L 39 41.961 0.961 22.924 1.00 -1.00 \ ATOM 225 O ASN L 39 42.564 -0.106 22.947 1.00 -1.00 \ ATOM 226 CB ASN L 39 42.106 2.267 20.768 1.00 -1.00 \ ATOM 227 CG ASN L 39 42.213 3.687 20.226 1.00 -1.00 \ ATOM 228 OD1 ASN L 39 42.679 3.910 19.109 1.00 -1.00 \ ATOM 229 ND2 ASN L 39 41.772 4.657 21.023 1.00 -1.00 \ ATOM 230 N PRO L 40 40.764 1.111 23.513 1.00 -1.00 \ ATOM 231 CA PRO L 40 40.098 0.016 24.230 1.00 -1.00 \ ATOM 232 C PRO L 40 40.412 -1.370 23.684 1.00 -1.00 \ ATOM 233 O PRO L 40 40.219 -1.641 22.504 1.00 -1.00 \ ATOM 234 CB PRO L 40 38.626 0.383 24.106 1.00 -1.00 \ ATOM 235 CG PRO L 40 38.675 1.870 24.244 1.00 -1.00 \ ATOM 236 CD PRO L 40 39.832 2.238 23.313 1.00 -1.00 \ ATOM 237 N SER L 41 40.912 -2.241 24.554 1.00 -1.00 \ ATOM 238 CA SER L 41 41.244 -3.599 24.150 1.00 -1.00 \ ATOM 239 C SER L 41 39.978 -4.456 24.124 1.00 -1.00 \ ATOM 240 O SER L 41 38.944 -4.086 24.688 1.00 -1.00 \ ATOM 241 CB SER L 41 42.289 -4.208 25.100 1.00 -1.00 \ ATOM 242 OG SER L 41 41.839 -4.211 26.440 1.00 -1.00 \ ATOM 243 N ALA L 42 40.079 -5.606 23.467 1.00 -1.00 \ ATOM 244 CA ALA L 42 38.967 -6.542 23.303 1.00 -1.00 \ ATOM 245 C ALA L 42 38.172 -6.912 24.555 1.00 -1.00 \ ATOM 246 O ALA L 42 36.990 -7.235 24.457 1.00 -1.00 \ ATOM 247 CB ALA L 42 39.475 -7.809 22.632 1.00 -1.00 \ """, "e2qjpL2_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e2qjpL2_csv", state=0, origin=1) cmd.zoom("e2qjpL2_csv", animate=-1)