cmd.read_pdbstr("""\ ATOM 1 N GLY R 9 -48.631 -62.837 69.125 1.00 -1.00 \ ATOM 2 CA GLY R 9 -47.556 -61.964 69.680 1.00 -1.00 \ ATOM 3 C GLY R 9 -46.169 -62.423 69.271 1.00 -1.00 \ ATOM 4 O GLY R 9 -45.846 -62.449 68.083 1.00 -1.00 \ ATOM 5 N THR R 10 -45.345 -62.780 70.255 1.00 -1.00 \ ATOM 6 CA THR R 10 -43.984 -63.243 69.988 1.00 -1.00 \ ATOM 7 C THR R 10 -43.958 -64.765 69.817 1.00 -1.00 \ ATOM 8 O THR R 10 -42.930 -65.410 70.021 1.00 -1.00 \ ATOM 9 CB THR R 10 -43.007 -62.823 71.128 1.00 -1.00 \ ATOM 10 OG1 THR R 10 -43.110 -61.410 71.351 1.00 -1.00 \ ATOM 11 CG2 THR R 10 -41.563 -63.145 70.749 1.00 -1.00 \ ATOM 12 N ARG R 11 -45.103 -65.332 69.448 1.00 0.82 \ ATOM 13 CA ARG R 11 -45.219 -66.771 69.219 1.00 0.82 \ ATOM 14 C ARG R 11 -44.735 -67.032 67.792 1.00 0.82 \ ATOM 15 O ARG R 11 -43.929 -67.939 67.544 1.00 0.82 \ ATOM 16 CB ARG R 11 -46.684 -67.214 69.383 1.00 0.82 \ ATOM 17 CG ARG R 11 -47.700 -66.410 68.559 1.00 0.82 \ ATOM 18 CD ARG R 11 -49.136 -66.822 68.889 1.00 0.82 \ ATOM 19 NE ARG R 11 -50.118 -66.169 68.022 1.00 0.82 \ ATOM 20 CZ ARG R 11 -51.425 -66.422 68.046 1.00 0.82 \ ATOM 21 NH1 ARG R 11 -51.917 -67.316 68.897 1.00 0.82 \ ATOM 22 NH2 ARG R 11 -52.243 -65.787 67.213 1.00 0.82 \ ATOM 23 N ARG R 12 -45.226 -66.208 66.866 1.00 0.82 \ ATOM 24 CA ARG R 12 -44.869 -66.307 65.453 1.00 0.82 \ ATOM 25 C ARG R 12 -43.590 -65.519 65.173 1.00 0.82 \ ATOM 26 O ARG R 12 -42.885 -65.801 64.204 1.00 0.82 \ ATOM 27 CB ARG R 12 -45.995 -65.778 64.560 1.00 0.82 \ ATOM 28 CG ARG R 12 -45.908 -64.285 64.303 1.00 0.82 \ ATOM 29 CD ARG R 12 -47.162 -63.720 63.668 1.00 0.82 \ ATOM 30 NE ARG R 12 -47.093 -62.262 63.644 1.00 0.82 \ ATOM 31 CZ ARG R 12 -48.141 -61.462 63.484 1.00 0.82 \ ATOM 32 NH1 ARG R 12 -49.356 -61.975 63.333 1.00 0.82 \ ATOM 33 NH2 ARG R 12 -47.976 -60.144 63.490 1.00 0.82 \ ATOM 34 N ASP R 13 -43.299 -64.532 66.016 1.00 0.82 \ ATOM 35 CA ASP R 13 -42.099 -63.725 65.848 1.00 0.82 \ ATOM 36 C ASP R 13 -40.897 -64.567 66.273 1.00 0.82 \ ATOM 37 O ASP R 13 -39.830 -64.511 65.656 1.00 0.82 \ ATOM 38 CB ASP R 13 -42.186 -62.459 66.701 1.00 0.82 \ ATOM 39 CG ASP R 13 -41.327 -61.333 66.158 1.00 0.82 \ ATOM 40 OD1 ASP R 13 -41.533 -60.944 64.986 1.00 0.82 \ ATOM 41 OD2 ASP R 13 -40.449 -60.835 66.896 1.00 0.82 \ ATOM 42 N PHE R 14 -41.085 -65.346 67.332 1.00 0.82 \ ATOM 43 CA PHE R 14 -40.049 -66.224 67.858 1.00 0.82 \ ATOM 44 C PHE R 14 -39.726 -67.301 66.818 1.00 0.82 \ ATOM 45 O PHE R 14 -38.559 -67.626 66.581 1.00 0.82 \ ATOM 46 CB PHE R 14 -40.569 -66.803 69.189 1.00 0.82 \ ATOM 47 CG PHE R 14 -40.051 -68.171 69.535 1.00 0.82 \ ATOM 48 CD1 PHE R 14 -38.689 -68.417 69.662 1.00 0.82 \ ATOM 49 CD2 PHE R 14 -40.945 -69.211 69.782 1.00 0.82 \ ATOM 50 CE1 PHE R 14 -38.225 -69.679 70.032 1.00 0.82 \ ATOM 51 CE2 PHE R 14 -40.492 -70.473 70.153 1.00 0.82 \ ATOM 52 CZ PHE R 14 -39.131 -70.708 70.279 1.00 0.82 \ ATOM 53 N LEU R 15 -40.769 -67.840 66.194 1.00 -0.76 \ ATOM 54 CA LEU R 15 -40.616 -68.873 65.171 1.00 -0.76 \ ATOM 55 C LEU R 15 -39.733 -68.355 64.039 1.00 -0.76 \ ATOM 56 O LEU R 15 -38.695 -68.937 63.737 1.00 -0.76 \ ATOM 57 CB LEU R 15 -41.990 -69.269 64.620 1.00 -0.76 \ ATOM 58 CG LEU R 15 -42.052 -70.366 63.554 1.00 -0.76 \ ATOM 59 CD1 LEU R 15 -41.578 -71.691 64.131 1.00 -0.76 \ ATOM 60 CD2 LEU R 15 -43.484 -70.493 63.049 1.00 -0.76 \ ATOM 61 N TYR R 16 -40.156 -67.257 63.420 1.00 0.82 \ ATOM 62 CA TYR R 16 -39.405 -66.657 62.325 1.00 0.82 \ ATOM 63 C TYR R 16 -37.971 -66.404 62.764 1.00 0.82 \ ATOM 64 O TYR R 16 -37.034 -66.481 61.967 1.00 0.82 \ ATOM 65 CB TYR R 16 -40.057 -65.338 61.891 1.00 0.82 \ ATOM 66 CG TYR R 16 -41.439 -65.501 61.292 1.00 0.82 \ ATOM 67 CD1 TYR R 16 -42.053 -66.754 61.237 1.00 0.82 \ ATOM 68 CD2 TYR R 16 -42.137 -64.404 60.789 1.00 0.82 \ ATOM 69 CE1 TYR R 16 -43.323 -66.909 60.702 1.00 0.82 \ ATOM 70 CE2 TYR R 16 -43.416 -64.551 60.244 1.00 0.82 \ ATOM 71 CZ TYR R 16 -44.000 -65.807 60.208 1.00 0.82 \ ATOM 72 OH TYR R 16 -45.262 -65.966 59.686 1.00 0.82 \ ATOM 73 N TYR R 17 -37.811 -66.110 64.048 1.00 -0.77 \ ATOM 74 CA TYR R 17 -36.501 -65.846 64.619 1.00 -0.77 \ ATOM 75 C TYR R 17 -35.703 -67.150 64.752 1.00 -0.77 \ ATOM 76 O TYR R 17 -34.542 -67.223 64.341 1.00 -0.77 \ ATOM 77 CB TYR R 17 -36.675 -65.177 65.987 1.00 -0.77 \ ATOM 78 CG TYR R 17 -35.373 -64.828 66.642 1.00 -0.77 \ ATOM 79 CD1 TYR R 17 -34.676 -63.673 66.287 1.00 -0.77 \ ATOM 80 CD2 TYR R 17 -34.791 -65.694 67.564 1.00 -0.77 \ ATOM 81 CE1 TYR R 17 -33.426 -63.397 66.831 1.00 -0.77 \ ATOM 82 CE2 TYR R 17 -33.547 -65.430 68.109 1.00 -0.77 \ ATOM 83 CZ TYR R 17 -32.867 -64.281 67.738 1.00 -0.77 \ ATOM 84 OH TYR R 17 -31.619 -64.035 68.258 1.00 -0.77 \ ATOM 85 N ALA R 18 -36.338 -68.174 65.319 1.00 0.82 \ ATOM 86 CA ALA R 18 -35.703 -69.474 65.512 1.00 0.82 \ ATOM 87 C ALA R 18 -35.361 -70.110 64.169 1.00 0.82 \ ATOM 88 O ALA R 18 -34.373 -70.840 64.043 1.00 0.82 \ ATOM 89 CB ALA R 18 -36.627 -70.393 66.300 1.00 0.82 \ ATOM 90 N THR R 19 -36.196 -69.835 63.175 1.00 0.82 \ ATOM 91 CA THR R 19 -36.006 -70.358 61.830 1.00 0.82 \ ATOM 92 C THR R 19 -34.738 -69.772 61.221 1.00 0.82 \ ATOM 93 O THR R 19 -33.800 -70.501 60.910 1.00 0.82 \ ATOM 94 CB THR R 19 -37.230 -70.025 60.945 1.00 0.82 \ ATOM 95 OG1 THR R 19 -38.303 -70.920 61.267 1.00 0.82 \ ATOM 96 CG2 THR R 19 -36.886 -70.147 59.470 1.00 0.82 \ ATOM 97 N ALA R 20 -34.710 -68.454 61.053 1.00 -0.76 \ ATOM 98 CA ALA R 20 -33.537 -67.799 60.489 1.00 -0.76 \ ATOM 99 C ALA R 20 -32.300 -68.235 61.267 1.00 -0.76 \ ATOM 100 O ALA R 20 -31.211 -68.359 60.706 1.00 -0.76 \ ATOM 101 CB ALA R 20 -33.693 -66.287 60.552 1.00 -0.76 \ ATOM 102 N GLY R 21 -32.475 -68.477 62.563 1.00 -0.77 \ ATOM 103 CA GLY R 21 -31.367 -68.906 63.397 1.00 -0.77 \ ATOM 104 C GLY R 21 -30.804 -70.244 62.969 1.00 -0.77 \ ATOM 105 O GLY R 21 -29.592 -70.403 62.840 1.00 -0.77 \ ATOM 106 N ALA R 22 -31.691 -71.209 62.752 1.00 -1.75 \ ATOM 107 CA ALA R 22 -31.277 -72.540 62.322 1.00 -1.75 \ ATOM 108 C ALA R 22 -30.571 -72.415 60.978 1.00 -1.75 \ ATOM 109 O ALA R 22 -29.567 -73.082 60.725 1.00 -1.75 \ ATOM 110 CB ALA R 22 -32.486 -73.452 62.196 1.00 -1.75 \ ATOM 111 N GLY R 23 -31.107 -71.549 60.123 1.00 0.82 \ ATOM 112 CA GLY R 23 -30.509 -71.335 58.822 1.00 0.82 \ ATOM 113 C GLY R 23 -29.055 -70.962 59.007 1.00 0.82 \ ATOM 114 O GLY R 23 -28.160 -71.703 58.607 1.00 0.82 \ ATOM 115 N ALA R 24 -28.824 -69.811 59.629 1.00 -0.81 \ ATOM 116 CA ALA R 24 -27.472 -69.328 59.882 1.00 -0.81 \ ATOM 117 C ALA R 24 -26.543 -70.441 60.354 1.00 -0.81 \ ATOM 118 O ALA R 24 -25.422 -70.566 59.868 1.00 -0.81 \ ATOM 119 CB ALA R 24 -27.509 -68.206 60.917 1.00 -0.81 \ ATOM 120 N VAL R 25 -27.011 -71.253 61.296 1.00 0.82 \ ATOM 121 CA VAL R 25 -26.194 -72.345 61.813 1.00 0.82 \ ATOM 122 C VAL R 25 -25.832 -73.360 60.733 1.00 0.82 \ ATOM 123 O VAL R 25 -24.676 -73.763 60.610 1.00 0.82 \ ATOM 124 CB VAL R 25 -26.900 -73.085 62.965 1.00 0.82 \ ATOM 125 CG1 VAL R 25 -26.158 -74.358 63.278 1.00 0.82 \ ATOM 126 CG2 VAL R 25 -26.932 -72.209 64.199 1.00 0.82 \ ATOM 127 N ALA R 26 -26.824 -73.776 59.956 1.00 -0.81 \ ATOM 128 CA ALA R 26 -26.602 -74.739 58.884 1.00 -0.81 \ ATOM 129 C ALA R 26 -25.616 -74.144 57.885 1.00 -0.81 \ ATOM 130 O ALA R 26 -24.688 -74.816 57.437 1.00 -0.81 \ ATOM 131 CB ALA R 26 -27.923 -75.067 58.193 1.00 -0.81 \ ATOM 132 N THR R 27 -25.831 -72.875 57.552 1.00 -0.80 \ ATOM 133 CA THR R 27 -24.976 -72.166 56.614 1.00 -0.80 \ ATOM 134 C THR R 27 -23.518 -72.197 57.070 1.00 -0.80 \ ATOM 135 O THR R 27 -22.625 -72.560 56.300 1.00 -0.80 \ ATOM 136 CB THR R 27 -25.422 -70.704 56.471 1.00 -0.80 \ ATOM 137 OG1 THR R 27 -26.748 -70.663 55.935 1.00 -0.80 \ ATOM 138 CG2 THR R 27 -24.477 -69.941 55.556 1.00 -0.80 \ ATOM 139 N GLY R 28 -23.282 -71.810 58.318 1.00 0.82 \ ATOM 140 CA GLY R 28 -21.932 -71.815 58.844 1.00 0.82 \ ATOM 141 C GLY R 28 -21.345 -73.210 58.811 1.00 0.82 \ ATOM 142 O GLY R 28 -20.178 -73.401 58.471 1.00 0.82 \ ATOM 143 N ALA R 29 -22.166 -74.191 59.170 1.00 -1.72 \ ATOM 144 CA ALA R 29 -21.731 -75.583 59.186 1.00 -1.72 \ ATOM 145 C ALA R 29 -21.247 -76.016 57.805 1.00 -1.72 \ ATOM 146 O ALA R 29 -20.410 -76.903 57.683 1.00 -1.72 \ ATOM 147 CB ALA R 29 -22.874 -76.479 59.642 1.00 -1.72 \ ATOM 148 N ALA R 30 -21.776 -75.379 56.767 1.00 0.82 \ ATOM 149 CA ALA R 30 -21.403 -75.699 55.396 1.00 0.82 \ ATOM 150 C ALA R 30 -20.159 -74.927 54.987 1.00 0.82 \ ATOM 151 O ALA R 30 -19.289 -75.444 54.282 1.00 0.82 \ ATOM 152 CB ALA R 30 -22.552 -75.361 54.450 1.00 0.82 \ ATOM 153 N VAL R 31 -20.085 -73.686 55.443 1.00 -1.72 \ ATOM 154 CA VAL R 31 -18.970 -72.818 55.118 1.00 -1.72 \ ATOM 155 C VAL R 31 -17.631 -73.209 55.751 1.00 -1.72 \ ATOM 156 O VAL R 31 -16.613 -73.235 55.060 1.00 -1.72 \ ATOM 157 CB VAL R 31 -19.335 -71.365 55.474 1.00 -1.72 \ ATOM 158 CG1 VAL R 31 -18.113 -70.473 55.426 1.00 -1.72 \ ATOM 159 CG2 VAL R 31 -20.394 -70.861 54.490 1.00 -1.72 \ ATOM 160 N TRP R 32 -17.623 -73.537 57.040 1.00 0.82 \ ATOM 161 CA TRP R 32 -16.373 -73.903 57.699 1.00 0.82 \ ATOM 162 C TRP R 32 -15.549 -74.946 56.931 1.00 0.82 \ ATOM 163 O TRP R 32 -14.363 -74.734 56.679 1.00 0.82 \ ATOM 164 CB TRP R 32 -16.639 -74.388 59.138 1.00 0.82 \ ATOM 165 CG TRP R 32 -15.439 -75.001 59.791 1.00 0.82 \ ATOM 166 CD1 TRP R 32 -15.364 -76.247 60.347 1.00 0.82 \ ATOM 167 CD2 TRP R 32 -14.121 -74.434 59.903 1.00 0.82 \ ATOM 168 NE1 TRP R 32 -14.082 -76.497 60.785 1.00 0.82 \ ATOM 169 CE2 TRP R 32 -13.298 -75.404 60.522 1.00 0.82 \ ATOM 170 CE3 TRP R 32 -13.548 -73.211 59.522 1.00 0.82 \ ATOM 171 CZ2 TRP R 32 -11.945 -75.183 60.786 1.00 0.82 \ ATOM 172 CZ3 TRP R 32 -12.199 -72.994 59.781 1.00 0.82 \ ATOM 173 CH2 TRP R 32 -11.412 -73.978 60.403 1.00 0.82 \ ATOM 174 N PRO R 33 -16.160 -76.081 56.551 1.00 0.82 \ ATOM 175 CA PRO R 33 -15.385 -77.089 55.814 1.00 0.82 \ ATOM 176 C PRO R 33 -14.850 -76.632 54.448 1.00 0.82 \ ATOM 177 O PRO R 33 -13.841 -77.157 53.972 1.00 0.82 \ ATOM 178 CB PRO R 33 -16.342 -78.289 55.736 1.00 0.82 \ ATOM 179 CG PRO R 33 -17.700 -77.671 55.861 1.00 0.82 \ ATOM 180 CD PRO R 33 -17.515 -76.567 56.869 1.00 0.82 \ ATOM 181 N LEU R 34 -15.513 -75.656 53.824 1.00 -1.00 \ ATOM 182 CA LEU R 34 -15.063 -75.131 52.534 1.00 -1.00 \ ATOM 183 C LEU R 34 -13.777 -74.343 52.759 1.00 -1.00 \ ATOM 184 O LEU R 34 -12.947 -74.201 51.842 1.00 -1.00 \ ATOM 185 CB LEU R 34 -16.112 -74.199 51.931 1.00 -1.00 \ ATOM 186 CG LEU R 34 -17.392 -74.875 51.442 1.00 -1.00 \ ATOM 187 CD1 LEU R 34 -18.340 -73.840 50.861 1.00 -1.00 \ ATOM 188 CD2 LEU R 34 -17.017 -75.919 50.397 1.00 -1.00 \ ATOM 189 N ILE R 35 -13.643 -73.826 53.973 1.00 -1.00 \ ATOM 190 CA ILE R 35 -12.484 -73.054 54.376 1.00 -1.00 \ ATOM 191 C ILE R 35 -11.395 -73.997 54.867 1.00 -1.00 \ ATOM 192 O ILE R 35 -10.252 -73.923 54.435 1.00 -1.00 \ ATOM 193 CB ILE R 35 -12.865 -72.080 55.516 1.00 -1.00 \ ATOM 194 CG1 ILE R 35 -13.670 -70.909 54.951 1.00 -1.00 \ ATOM 195 CG2 ILE R 35 -11.618 -71.594 56.247 1.00 -1.00 \ ATOM 196 CD1 ILE R 35 -14.231 -69.985 56.004 1.00 -1.00 \ ATOM 197 N ASN R 36 -11.772 -74.902 55.759 1.00 -1.00 \ ATOM 198 CA ASN R 36 -10.822 -75.823 56.344 1.00 -1.00 \ ATOM 199 C ASN R 36 -10.140 -76.820 55.405 1.00 -1.00 \ ATOM 200 O ASN R 36 -9.109 -77.395 55.758 1.00 -1.00 \ ATOM 201 CB ASN R 36 -11.482 -76.578 57.492 1.00 -1.00 \ ATOM 202 CG ASN R 36 -10.464 -77.259 58.384 1.00 -1.00 \ ATOM 203 OD1 ASN R 36 -10.681 -78.365 58.845 1.00 -1.00 \ ATOM 204 ND2 ASN R 36 -9.342 -76.584 58.633 1.00 -1.00 \ ATOM 205 N GLN R 37 -10.692 -77.050 54.217 1.00 -1.00 \ ATOM 206 CA GLN R 37 -10.061 -77.997 53.296 1.00 -1.00 \ ATOM 207 C GLN R 37 -8.727 -77.431 52.836 1.00 -1.00 \ ATOM 208 O GLN R 37 -7.840 -78.163 52.404 1.00 -1.00 \ ATOM 209 CB GLN R 37 -10.975 -78.291 52.090 1.00 -1.00 \ ATOM 210 CG GLN R 37 -11.586 -77.077 51.394 1.00 -1.00 \ ATOM 211 CD GLN R 37 -10.643 -76.407 50.419 1.00 -1.00 \ ATOM 212 OE1 GLN R 37 -9.696 -77.020 49.926 1.00 -1.00 \ ATOM 213 NE2 GLN R 37 -10.916 -75.148 50.112 1.00 -1.00 \ ATOM 214 N MET R 38 -8.585 -76.117 52.951 1.00 -1.00 \ ATOM 215 CA MET R 38 -7.353 -75.465 52.555 1.00 -1.00 \ ATOM 216 C MET R 38 -6.277 -75.563 53.637 1.00 -1.00 \ ATOM 217 O MET R 38 -5.108 -75.275 53.356 1.00 -1.00 \ ATOM 218 CB MET R 38 -7.614 -74.006 52.189 1.00 -1.00 \ ATOM 219 CG MET R 38 -7.685 -73.780 50.693 1.00 -1.00 \ ATOM 220 SD MET R 38 -8.418 -72.205 50.225 1.00 -1.00 \ ATOM 221 CE MET R 38 -6.997 -71.118 50.352 1.00 -1.00 \ ATOM 222 N ASN R 39 -6.638 -75.965 54.851 1.00 -1.00 \ ATOM 223 CA ASN R 39 -5.623 -76.090 55.874 1.00 -1.00 \ ATOM 224 C ASN R 39 -4.783 -77.333 55.577 1.00 -1.00 \ ATOM 225 O ASN R 39 -5.223 -78.235 54.877 1.00 -1.00 \ ATOM 226 CB ASN R 39 -6.265 -76.132 57.270 1.00 -1.00 \ ATOM 227 CG ASN R 39 -6.564 -74.745 57.807 1.00 -1.00 \ ATOM 228 OD1 ASN R 39 -7.620 -74.506 58.386 1.00 -1.00 \ ATOM 229 ND2 ASN R 39 -5.632 -73.822 57.612 1.00 -1.00 \ ATOM 230 N PRO R 40 -3.552 -77.386 56.112 1.00 -1.00 \ ATOM 231 CA PRO R 40 -2.671 -78.531 55.875 1.00 -1.00 \ ATOM 232 C PRO R 40 -3.356 -79.889 55.927 1.00 -1.00 \ ATOM 233 O PRO R 40 -4.077 -80.209 56.870 1.00 -1.00 \ ATOM 234 CB PRO R 40 -1.596 -78.371 56.955 1.00 -1.00 \ ATOM 235 CG PRO R 40 -1.494 -76.879 57.065 1.00 -1.00 \ ATOM 236 CD PRO R 40 -2.951 -76.471 57.099 1.00 -1.00 \ ATOM 237 N SER R 41 -3.123 -80.688 54.892 1.00 -1.00 \ ATOM 238 CA SER R 41 -3.708 -82.015 54.834 1.00 -1.00 \ ATOM 239 C SER R 41 -2.829 -82.985 55.620 1.00 -1.00 \ ATOM 240 O SER R 41 -1.683 -82.683 55.941 1.00 -1.00 \ ATOM 241 CB SER R 41 -3.874 -82.473 53.378 1.00 -1.00 \ ATOM 242 OG SER R 41 -2.640 -82.456 52.680 1.00 -1.00 \ """, "e2qjyR2_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e2qjyR2_csv", state=0, origin=1) cmd.zoom("e2qjyR2_csv", animate=-1)