cmd.read_pdbstr("""\ ATOM 1 N SER D 19 113.891 76.514 -21.282 1.00 -1.00 \ ATOM 2 CA SER D 19 115.230 75.925 -21.219 1.00 -1.00 \ ATOM 3 C SER D 19 115.439 74.710 -22.163 1.00 -1.00 \ ATOM 4 O SER D 19 114.464 74.146 -22.680 1.00 -1.00 \ ATOM 5 CB SER D 19 115.615 75.587 -19.774 1.00 -1.00 \ ATOM 6 OG SER D 19 115.024 74.389 -19.293 1.00 -1.00 \ ATOM 7 N LEU D 20 116.728 74.332 -22.392 1.00 1.75 \ ATOM 8 CA LEU D 20 117.138 73.208 -23.245 1.00 1.75 \ ATOM 9 C LEU D 20 117.193 71.912 -22.445 1.00 1.75 \ ATOM 10 O LEU D 20 117.685 71.895 -21.313 1.00 1.75 \ ATOM 11 CB LEU D 20 118.491 73.476 -23.944 1.00 1.75 \ ATOM 12 CG LEU D 20 118.502 74.509 -25.087 1.00 1.75 \ ATOM 13 CD1 LEU D 20 119.870 75.134 -25.239 1.00 1.75 \ ATOM 14 CD2 LEU D 20 118.091 73.893 -26.403 1.00 1.75 \ ATOM 15 N LEU D 21 116.666 70.834 -23.043 1.00 0.29 \ ATOM 16 CA LEU D 21 116.584 69.503 -22.441 1.00 0.29 \ ATOM 17 C LEU D 21 117.861 68.699 -22.565 1.00 0.29 \ ATOM 18 O LEU D 21 118.529 68.749 -23.598 1.00 0.29 \ ATOM 19 CB LEU D 21 115.399 68.714 -23.032 1.00 0.29 \ ATOM 20 CG LEU D 21 114.046 68.950 -22.361 1.00 0.29 \ ATOM 21 CD1 LEU D 21 112.910 68.491 -23.242 1.00 0.29 \ ATOM 22 CD2 LEU D 21 113.985 68.281 -20.974 1.00 0.29 \ ATOM 23 N THR D 22 118.183 67.942 -21.508 1.00 -1.13 \ ATOM 24 CA THR D 22 119.368 67.083 -21.466 1.00 -1.13 \ ATOM 25 C THR D 22 119.089 65.700 -22.074 1.00 -1.13 \ ATOM 26 O THR D 22 117.986 65.162 -21.950 1.00 -1.13 \ ATOM 27 CB THR D 22 119.979 67.014 -20.063 1.00 -1.13 \ ATOM 28 OG1 THR D 22 118.978 66.592 -19.142 1.00 -1.13 \ ATOM 29 CG2 THR D 22 120.574 68.336 -19.619 1.00 -1.13 \ ATOM 30 N CYS D 23 120.101 65.150 -22.744 1.00 1.75 \ ATOM 31 CA CYS D 23 120.066 63.867 -23.427 1.00 1.75 \ ATOM 32 C CYS D 23 120.351 62.677 -22.492 1.00 1.75 \ ATOM 33 O CYS D 23 121.076 62.830 -21.508 1.00 1.75 \ ATOM 34 CB CYS D 23 121.016 63.892 -24.620 1.00 1.75 \ ATOM 35 SG CYS D 23 121.013 62.379 -25.610 1.00 1.75 \ ATOM 36 N GLY D 24 119.766 61.515 -22.800 1.00 -0.42 \ ATOM 37 CA GLY D 24 119.932 60.286 -22.028 1.00 -0.42 \ ATOM 38 C GLY D 24 121.207 59.523 -22.338 1.00 -0.42 \ ATOM 39 O GLY D 24 121.613 58.660 -21.554 1.00 -0.42 \ ATOM 40 N GLY D 25 121.819 59.827 -23.483 1.00 -1.02 \ ATOM 41 CA GLY D 25 123.051 59.202 -23.951 1.00 -1.02 \ ATOM 42 C GLY D 25 124.332 59.932 -23.575 1.00 -1.02 \ ATOM 43 O GLY D 25 125.194 59.359 -22.903 1.00 -1.02 \ ATOM 44 N CYS D 26 124.471 61.203 -24.006 1.00 1.75 \ ATOM 45 CA CYS D 26 125.661 62.032 -23.776 1.00 1.75 \ ATOM 46 C CYS D 26 125.513 63.043 -22.627 1.00 1.75 \ ATOM 47 O CYS D 26 126.495 63.710 -22.264 1.00 1.75 \ ATOM 48 CB CYS D 26 126.094 62.718 -25.070 1.00 1.75 \ ATOM 49 SG CYS D 26 124.999 64.061 -25.594 1.00 1.75 \ ATOM 50 N GLN D 27 124.285 63.164 -22.066 1.00 -0.50 \ ATOM 51 CA GLN D 27 123.939 64.071 -20.955 1.00 -0.50 \ ATOM 52 C GLN D 27 124.200 65.561 -21.240 1.00 -0.50 \ ATOM 53 O GLN D 27 124.468 66.330 -20.319 1.00 -0.50 \ ATOM 54 CB GLN D 27 124.522 63.584 -19.614 1.00 -0.50 \ ATOM 55 CG GLN D 27 123.870 62.288 -19.113 1.00 -0.50 \ ATOM 56 CD GLN D 27 124.354 60.975 -19.709 1.00 -0.50 \ ATOM 57 OE1 GLN D 27 125.390 60.891 -20.374 1.00 -0.50 \ ATOM 58 NE2 GLN D 27 123.642 59.903 -19.439 1.00 -0.50 \ ATOM 59 N GLN D 28 124.094 65.954 -22.524 1.00 -0.54 \ ATOM 60 CA GLN D 28 124.310 67.319 -23.001 1.00 -0.54 \ ATOM 61 C GLN D 28 123.069 67.836 -23.720 1.00 -0.54 \ ATOM 62 O GLN D 28 122.349 67.054 -24.342 1.00 -0.54 \ ATOM 63 CB GLN D 28 125.553 67.398 -23.905 1.00 -0.54 \ ATOM 64 CG GLN D 28 126.862 67.147 -23.149 1.00 -0.54 \ ATOM 65 CD GLN D 28 128.092 67.334 -23.999 1.00 -0.54 \ ATOM 66 OE1 GLN D 28 128.333 66.593 -24.955 1.00 -0.54 \ ATOM 67 NE2 GLN D 28 128.937 68.290 -23.623 1.00 -0.54 \ ATOM 68 N ASN D 29 122.817 69.152 -23.626 1.00 -0.52 \ ATOM 69 CA ASN D 29 121.665 69.841 -24.208 1.00 -0.52 \ ATOM 70 C ASN D 29 121.465 69.606 -25.692 1.00 -0.52 \ ATOM 71 O ASN D 29 122.428 69.583 -26.466 1.00 -0.52 \ ATOM 72 CB ASN D 29 121.703 71.352 -23.921 1.00 -0.52 \ ATOM 73 CG ASN D 29 121.514 71.740 -22.474 1.00 -0.52 \ ATOM 74 OD1 ASN D 29 121.439 70.895 -21.569 1.00 -0.52 \ ATOM 75 ND2 ASN D 29 121.445 73.044 -22.226 1.00 -0.52 \ ATOM 76 N ILE D 30 120.194 69.466 -26.084 1.00 0.41 \ ATOM 77 CA ILE D 30 119.819 69.240 -27.467 1.00 0.41 \ ATOM 78 C ILE D 30 119.412 70.578 -28.110 1.00 0.41 \ ATOM 79 O ILE D 30 118.297 71.075 -27.912 1.00 0.41 \ ATOM 80 CB ILE D 30 118.761 68.101 -27.627 1.00 0.41 \ ATOM 81 CG1 ILE D 30 119.122 66.849 -26.797 1.00 0.41 \ ATOM 82 CG2 ILE D 30 118.552 67.753 -29.111 1.00 0.41 \ ATOM 83 CD1 ILE D 30 118.009 66.335 -25.942 1.00 0.41 \ ATOM 84 N GLY D 31 120.363 71.148 -28.840 1.00 -1.11 \ ATOM 85 CA GLY D 31 120.218 72.409 -29.547 1.00 -1.11 \ ATOM 86 C GLY D 31 120.011 72.189 -31.030 1.00 -1.11 \ ATOM 87 O GLY D 31 120.465 72.994 -31.847 1.00 -1.11 \ ATOM 88 N ASP D 32 119.321 71.089 -31.383 1.00 0.41 \ ATOM 89 CA ASP D 32 118.989 70.718 -32.757 1.00 0.41 \ ATOM 90 C ASP D 32 117.493 70.890 -32.961 1.00 0.41 \ ATOM 91 O ASP D 32 116.725 70.814 -31.999 1.00 0.41 \ ATOM 92 CB ASP D 32 119.393 69.257 -33.046 1.00 0.41 \ ATOM 93 CG ASP D 32 120.877 68.951 -32.929 1.00 0.41 \ ATOM 94 OD1 ASP D 32 121.676 69.610 -33.629 1.00 0.41 \ ATOM 95 OD2 ASP D 32 121.232 68.005 -32.189 1.00 0.41 \ ATOM 96 N ARG D 33 117.085 71.126 -34.219 1.00 0.32 \ ATOM 97 CA ARG D 33 115.684 71.297 -34.625 1.00 0.32 \ ATOM 98 C ARG D 33 114.869 70.002 -34.573 1.00 0.32 \ ATOM 99 O ARG D 33 113.632 70.045 -34.531 1.00 0.32 \ ATOM 100 CB ARG D 33 115.610 71.908 -36.031 1.00 0.32 \ ATOM 101 CG ARG D 33 115.741 73.423 -35.986 1.00 0.32 \ ATOM 102 CD ARG D 33 116.133 74.039 -37.312 1.00 0.32 \ ATOM 103 NE ARG D 33 116.369 75.477 -37.167 1.00 0.32 \ ATOM 104 CZ ARG D 33 117.105 76.204 -37.998 1.00 0.32 \ ATOM 105 NH1 ARG D 33 117.259 77.503 -37.791 1.00 0.32 \ ATOM 106 NH2 ARG D 33 117.700 75.636 -39.039 1.00 0.32 \ ATOM 107 N TYR D 34 115.558 68.852 -34.608 1.00 -1.14 \ ATOM 108 CA TYR D 34 114.920 67.540 -34.568 1.00 -1.14 \ ATOM 109 C TYR D 34 115.572 66.656 -33.498 1.00 -1.14 \ ATOM 110 O TYR D 34 116.778 66.384 -33.556 1.00 -1.14 \ ATOM 111 CB TYR D 34 114.977 66.868 -35.951 1.00 -1.14 \ ATOM 112 CG TYR D 34 114.294 67.642 -37.061 1.00 -1.14 \ ATOM 113 CD1 TYR D 34 112.982 67.362 -37.428 1.00 -1.14 \ ATOM 114 CD2 TYR D 34 114.976 68.628 -37.776 1.00 -1.14 \ ATOM 115 CE1 TYR D 34 112.352 68.059 -38.459 1.00 -1.14 \ ATOM 116 CE2 TYR D 34 114.350 69.348 -38.794 1.00 -1.14 \ ATOM 117 CZ TYR D 34 113.041 69.050 -39.142 1.00 -1.14 \ ATOM 118 OH TYR D 34 112.424 69.750 -40.152 1.00 -1.14 \ ATOM 119 N PHE D 35 114.767 66.253 -32.500 1.00 -1.16 \ ATOM 120 CA PHE D 35 115.186 65.387 -31.403 1.00 -1.16 \ ATOM 121 C PHE D 35 114.168 64.259 -31.140 1.00 -1.16 \ ATOM 122 O PHE D 35 113.067 64.281 -31.695 1.00 -1.16 \ ATOM 123 CB PHE D 35 115.521 66.196 -30.145 1.00 -1.16 \ ATOM 124 CG PHE D 35 114.361 66.702 -29.328 1.00 -1.16 \ ATOM 125 CD1 PHE D 35 114.026 66.098 -28.119 1.00 -1.16 \ ATOM 126 CD2 PHE D 35 113.623 67.802 -29.746 1.00 -1.16 \ ATOM 127 CE1 PHE D 35 112.974 66.582 -27.341 1.00 -1.16 \ ATOM 128 CE2 PHE D 35 112.565 68.282 -28.971 1.00 -1.16 \ ATOM 129 CZ PHE D 35 112.254 67.672 -27.770 1.00 -1.16 \ ATOM 130 N LEU D 36 114.555 63.256 -30.324 1.00 0.41 \ ATOM 131 CA LEU D 36 113.725 62.085 -30.044 1.00 0.41 \ ATOM 132 C LEU D 36 113.408 61.893 -28.553 1.00 0.41 \ ATOM 133 O LEU D 36 114.139 62.376 -27.692 1.00 0.41 \ ATOM 134 CB LEU D 36 114.367 60.810 -30.644 1.00 0.41 \ ATOM 135 CG LEU D 36 114.821 60.882 -32.107 1.00 0.41 \ ATOM 136 CD1 LEU D 36 116.004 59.998 -32.365 1.00 0.41 \ ATOM 137 CD2 LEU D 36 113.699 60.571 -33.047 1.00 0.41 \ ATOM 138 N LYS D 37 112.297 61.187 -28.268 1.00 -0.52 \ ATOM 139 CA LYS D 37 111.831 60.855 -26.924 1.00 -0.52 \ ATOM 140 C LYS D 37 111.552 59.345 -26.855 1.00 -0.52 \ ATOM 141 O LYS D 37 110.676 58.851 -27.573 1.00 -0.52 \ ATOM 142 CB LYS D 37 110.570 61.666 -26.571 1.00 -0.52 \ ATOM 143 CG LYS D 37 110.187 61.582 -25.101 1.00 -0.52 \ ATOM 144 CD LYS D 37 108.838 62.211 -24.837 1.00 -0.52 \ ATOM 145 CE LYS D 37 108.325 61.879 -23.457 1.00 -0.52 \ ATOM 146 NZ LYS D 37 107.049 62.580 -23.169 1.00 -0.52 \ ATOM 147 N ALA D 38 112.310 58.615 -26.010 1.00 1.75 \ ATOM 148 CA ALA D 38 112.175 57.162 -25.831 1.00 1.75 \ ATOM 149 C ALA D 38 112.564 56.757 -24.417 1.00 1.75 \ ATOM 150 O ALA D 38 113.510 57.315 -23.863 1.00 1.75 \ ATOM 151 CB ALA D 38 113.030 56.424 -26.849 1.00 1.75 \ ATOM 152 N ILE D 39 111.846 55.764 -23.839 1.00 -0.51 \ ATOM 153 CA ILE D 39 112.033 55.233 -22.471 1.00 -0.51 \ ATOM 154 C ILE D 39 112.004 56.383 -21.419 1.00 -0.51 \ ATOM 155 O ILE D 39 112.792 56.393 -20.458 1.00 -0.51 \ ATOM 156 CB ILE D 39 113.247 54.257 -22.299 1.00 -0.51 \ ATOM 157 CG1 ILE D 39 113.088 52.946 -23.066 1.00 -0.51 \ ATOM 158 CG2 ILE D 39 113.606 54.001 -20.817 1.00 -0.51 \ ATOM 159 CD1 ILE D 39 114.330 52.178 -23.095 1.00 -0.51 \ ATOM 160 N ASP D 40 111.088 57.359 -21.633 1.00 0.39 \ ATOM 161 CA ASP D 40 110.879 58.545 -20.795 1.00 0.39 \ ATOM 162 C ASP D 40 112.168 59.379 -20.633 1.00 0.39 \ ATOM 163 O ASP D 40 112.443 59.940 -19.568 1.00 0.39 \ ATOM 164 CB ASP D 40 110.197 58.185 -19.458 1.00 0.39 \ ATOM 165 CG ASP D 40 109.019 57.241 -19.626 1.00 0.39 \ ATOM 166 OD1 ASP D 40 107.908 57.727 -19.956 1.00 0.39 \ ATOM 167 OD2 ASP D 40 109.218 56.014 -19.483 1.00 0.39 \ ATOM 168 N GLN D 41 112.945 59.453 -21.728 1.00 -1.10 \ ATOM 169 CA GLN D 41 114.200 60.183 -21.853 1.00 -1.10 \ ATOM 170 C GLN D 41 114.233 60.889 -23.199 1.00 -1.10 \ ATOM 171 O GLN D 41 113.560 60.459 -24.133 1.00 -1.10 \ ATOM 172 CB GLN D 41 115.402 59.230 -21.714 1.00 -1.10 \ ATOM 173 CG GLN D 41 115.986 59.211 -20.304 1.00 -1.10 \ ATOM 174 CD GLN D 41 117.252 58.396 -20.134 1.00 -1.10 \ ATOM 175 OE1 GLN D 41 117.460 57.345 -20.735 1.00 -1.10 \ ATOM 176 NE2 GLN D 41 118.020 58.737 -19.119 1.00 -1.10 \ ATOM 177 N TYR D 42 115.001 61.983 -23.289 1.00 -0.54 \ ATOM 178 CA TYR D 42 115.177 62.757 -24.518 1.00 -0.54 \ ATOM 179 C TYR D 42 116.538 62.437 -25.120 1.00 -0.54 \ ATOM 180 O TYR D 42 117.499 62.211 -24.387 1.00 -0.54 \ ATOM 181 CB TYR D 42 114.984 64.260 -24.269 1.00 -0.54 \ ATOM 182 CG TYR D 42 113.656 64.584 -23.623 1.00 -0.54 \ ATOM 183 CD1 TYR D 42 113.563 64.797 -22.249 1.00 -0.54 \ ATOM 184 CD2 TYR D 42 112.485 64.646 -24.377 1.00 -0.54 \ ATOM 185 CE1 TYR D 42 112.340 65.081 -21.642 1.00 -0.54 \ ATOM 186 CE2 TYR D 42 111.255 64.927 -23.782 1.00 -0.54 \ ATOM 187 CZ TYR D 42 111.190 65.156 -22.412 1.00 -0.54 \ ATOM 188 OH TYR D 42 109.992 65.439 -21.796 1.00 -0.54 \ ATOM 189 N TRP D 43 116.602 62.339 -26.443 1.00 -0.54 \ ATOM 190 CA TRP D 43 117.817 61.940 -27.138 1.00 -0.54 \ ATOM 191 C TRP D 43 118.118 62.823 -28.342 1.00 -0.54 \ ATOM 192 O TRP D 43 117.208 63.330 -29.000 1.00 -0.54 \ ATOM 193 CB TRP D 43 117.721 60.441 -27.601 1.00 -0.54 \ ATOM 194 CG TRP D 43 117.186 59.477 -26.571 1.00 -0.54 \ ATOM 195 CD1 TRP D 43 115.878 59.276 -26.232 1.00 -0.54 \ ATOM 196 CD2 TRP D 43 117.956 58.608 -25.730 1.00 -0.54 \ ATOM 197 NE1 TRP D 43 115.787 58.366 -25.205 1.00 -0.54 \ ATOM 198 CE2 TRP D 43 117.047 57.932 -24.883 1.00 -0.54 \ ATOM 199 CE3 TRP D 43 119.329 58.327 -25.612 1.00 -0.54 \ ATOM 200 CZ2 TRP D 43 117.466 56.991 -23.939 1.00 -0.54 \ ATOM 201 CZ3 TRP D 43 119.741 57.414 -24.657 1.00 -0.54 \ ATOM 202 CH2 TRP D 43 118.817 56.765 -23.828 1.00 -0.54 \ ATOM 203 N HIS D 44 119.419 63.003 -28.619 1.00 1.75 \ ATOM 204 CA HIS D 44 119.930 63.623 -29.837 1.00 1.75 \ ATOM 205 C HIS D 44 119.667 62.510 -30.890 1.00 1.75 \ ATOM 206 O HIS D 44 119.684 61.328 -30.518 1.00 1.75 \ ATOM 207 CB HIS D 44 121.459 63.800 -29.744 1.00 1.75 \ ATOM 208 CG HIS D 44 121.972 65.001 -29.004 1.00 1.75 \ ATOM 209 ND1 HIS D 44 122.347 64.925 -27.668 1.00 1.75 \ ATOM 210 CD2 HIS D 44 122.328 66.217 -29.480 1.00 1.75 \ ATOM 211 CE1 HIS D 44 122.838 66.116 -27.361 1.00 1.75 \ ATOM 212 NE2 HIS D 44 122.856 66.923 -28.419 1.00 1.75 \ ATOM 213 N GLU D 45 119.453 62.864 -32.177 1.00 -0.54 \ ATOM 214 CA GLU D 45 119.203 61.894 -33.270 1.00 -0.54 \ ATOM 215 C GLU D 45 120.154 60.673 -33.244 1.00 -0.54 \ ATOM 216 O GLU D 45 119.704 59.521 -33.276 1.00 -0.54 \ ATOM 217 CB GLU D 45 119.317 62.590 -34.645 1.00 -0.54 \ ATOM 218 CG GLU D 45 118.106 63.404 -35.071 1.00 -0.54 \ ATOM 219 CD GLU D 45 118.261 64.092 -36.415 1.00 -0.54 \ ATOM 220 OE1 GLU D 45 118.932 65.149 -36.467 1.00 -0.54 \ ATOM 221 OE2 GLU D 45 117.715 63.577 -37.416 1.00 -0.54 \ ATOM 222 N ASP D 46 121.469 60.958 -33.147 1.00 0.31 \ ATOM 223 CA ASP D 46 122.603 60.021 -33.136 1.00 0.31 \ ATOM 224 C ASP D 46 122.864 59.325 -31.784 1.00 0.31 \ ATOM 225 O ASP D 46 123.567 58.311 -31.748 1.00 0.31 \ ATOM 226 CB ASP D 46 123.881 60.754 -33.620 1.00 0.31 \ ATOM 227 CG ASP D 46 123.737 61.490 -34.954 1.00 0.31 \ ATOM 228 OD1 ASP D 46 122.968 61.011 -35.825 1.00 0.31 \ ATOM 229 OD2 ASP D 46 124.391 62.546 -35.124 1.00 0.31 \ ATOM 230 N CYS D 47 122.318 59.875 -30.686 1.00 -1.00 \ ATOM 231 CA CYS D 47 122.493 59.314 -29.345 1.00 -1.00 \ ATOM 232 C CYS D 47 121.606 58.103 -29.022 1.00 -1.00 \ ATOM 233 O CYS D 47 122.018 57.261 -28.218 1.00 -1.00 \ ATOM 234 CB CYS D 47 122.395 60.392 -28.277 1.00 -1.00 \ ATOM 235 SG CYS D 47 123.801 61.533 -28.266 1.00 -1.00 \ ATOM 236 N LEU D 48 120.407 57.992 -29.652 1.00 -1.00 \ ATOM 237 CA LEU D 48 119.535 56.826 -29.447 1.00 -1.00 \ ATOM 238 C LEU D 48 120.041 55.708 -30.348 1.00 -1.00 \ ATOM 239 O LEU D 48 119.595 55.570 -31.491 1.00 -1.00 \ ATOM 240 CB LEU D 48 118.041 57.148 -29.703 1.00 -1.00 \ ATOM 241 CG LEU D 48 116.997 56.065 -29.348 1.00 -1.00 \ ATOM 242 CD1 LEU D 48 116.916 55.810 -27.850 1.00 -1.00 \ ATOM 243 CD2 LEU D 48 115.635 56.462 -29.837 1.00 -1.00 \ """, "e2xjzD3_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e2xjzD3_csv", state=0, origin=1) cmd.zoom("e2xjzD3_csv", animate=-1)