cmd.read_pdbstr("""\ ATOM 1 N ILE y5001 10.739 -50.699 -16.519 1.00 0.64 \ ATOM 2 CA ILE y5001 11.159 -50.145 -15.203 1.00 0.64 \ ATOM 3 C ILE y5001 11.283 -48.625 -15.262 1.00 0.64 \ ATOM 4 O ILE y5001 10.690 -47.924 -14.449 1.00 0.64 \ ATOM 5 CB ILE y5001 12.508 -50.763 -14.735 1.00 0.64 \ ATOM 6 CG1 ILE y5001 12.772 -50.416 -13.269 1.00 0.64 \ ATOM 7 CG2 ILE y5001 13.648 -50.242 -15.584 1.00 0.64 \ ATOM 8 CD1 ILE y5001 13.240 -49.007 -13.043 1.00 0.64 \ ATOM 9 N ALA y5002 12.055 -48.117 -16.216 1.00 0.64 \ ATOM 10 CA ALA y5002 12.237 -46.685 -16.347 1.00 0.64 \ ATOM 11 C ALA y5002 11.760 -46.169 -17.701 1.00 0.64 \ ATOM 12 O ALA y5002 12.303 -46.528 -18.747 1.00 0.64 \ ATOM 13 CB ALA y5002 13.707 -46.324 -16.129 1.00 0.64 \ ATOM 14 N GLN y5003 10.733 -45.325 -17.665 1.00 0.64 \ ATOM 15 CA GLN y5003 10.174 -44.717 -18.865 1.00 0.64 \ ATOM 16 C GLN y5003 10.961 -43.424 -19.112 1.00 0.64 \ ATOM 17 O GLN y5003 10.513 -42.523 -19.829 1.00 0.64 \ ATOM 18 CB GLN y5003 8.669 -44.440 -18.675 1.00 0.64 \ ATOM 19 CG GLN y5003 8.263 -43.058 -18.161 1.00 0.64 \ ATOM 20 CD GLN y5003 9.062 -42.579 -16.968 1.00 0.64 \ ATOM 21 OE1 GLN y5003 10.007 -41.806 -17.116 1.00 0.64 \ ATOM 22 NE2 GLN y5003 8.691 -43.037 -15.779 1.00 0.64 \ ATOM 23 N LEU y5004 12.139 -43.354 -18.480 1.00 0.64 \ ATOM 24 CA LEU y5004 13.073 -42.220 -18.586 1.00 0.64 \ ATOM 25 C LEU y5004 13.465 -42.082 -20.046 1.00 0.64 \ ATOM 26 O LEU y5004 13.948 -41.040 -20.492 1.00 0.64 \ ATOM 27 CB LEU y5004 14.352 -42.485 -17.778 1.00 0.64 \ ATOM 28 CG LEU y5004 14.285 -42.808 -16.284 1.00 0.64 \ ATOM 29 CD1 LEU y5004 15.704 -42.951 -15.730 1.00 0.64 \ ATOM 30 CD2 LEU y5004 13.522 -41.698 -15.552 1.00 0.64 \ ATOM 31 N THR y5005 13.271 -43.176 -20.769 1.00 0.64 \ ATOM 32 CA THR y5005 13.585 -43.242 -22.178 1.00 0.64 \ ATOM 33 C THR y5005 12.548 -42.415 -22.943 1.00 0.64 \ ATOM 34 O THR y5005 12.882 -41.675 -23.867 1.00 0.64 \ ATOM 35 CB THR y5005 13.569 -44.720 -22.660 1.00 0.64 \ ATOM 36 OG1 THR y5005 12.236 -45.241 -22.588 1.00 0.64 \ ATOM 37 CG2 THR y5005 14.473 -45.575 -21.775 1.00 0.64 \ ATOM 38 N MET y5006 11.291 -42.533 -22.528 1.00 0.64 \ ATOM 39 CA MET y5006 10.184 -41.829 -23.162 1.00 0.64 \ ATOM 40 C MET y5006 10.329 -40.327 -23.096 1.00 0.64 \ ATOM 41 O MET y5006 10.323 -39.652 -24.121 1.00 0.64 \ ATOM 42 CB MET y5006 8.874 -42.227 -22.495 1.00 0.64 \ ATOM 43 CG MET y5006 8.504 -43.678 -22.700 1.00 0.64 \ ATOM 44 SD MET y5006 7.715 -43.923 -24.283 1.00 0.64 \ ATOM 45 CE MET y5006 9.080 -43.886 -25.413 1.00 0.64 \ ATOM 46 N ILE y5007 10.450 -39.820 -21.872 1.00 -1.50 \ ATOM 47 CA ILE y5007 10.603 -38.391 -21.612 1.00 -1.50 \ ATOM 48 C ILE y5007 11.832 -37.852 -22.355 1.00 -1.50 \ ATOM 49 O ILE y5007 11.828 -36.718 -22.848 1.00 -1.50 \ ATOM 50 CB ILE y5007 10.721 -38.118 -20.070 1.00 -1.50 \ ATOM 51 CG1 ILE y5007 11.260 -36.704 -19.812 1.00 -1.50 \ ATOM 52 CG2 ILE y5007 11.581 -39.196 -19.412 1.00 -1.50 \ ATOM 53 CD1 ILE y5007 11.394 -36.335 -18.342 1.00 -1.50 \ ATOM 54 N ALA y5008 12.879 -38.674 -22.431 1.00 0.64 \ ATOM 55 CA ALA y5008 14.108 -38.305 -23.127 1.00 0.64 \ ATOM 56 C ALA y5008 13.828 -38.336 -24.624 1.00 0.64 \ ATOM 57 O ALA y5008 14.386 -37.556 -25.392 1.00 0.64 \ ATOM 58 CB ALA y5008 15.229 -39.284 -22.775 1.00 0.64 \ ATOM 59 N MET y5009 12.958 -39.248 -25.041 1.00 -1.50 \ ATOM 60 CA MET y5009 12.621 -39.332 -26.450 1.00 -1.50 \ ATOM 61 C MET y5009 11.710 -38.182 -26.854 1.00 -1.50 \ ATOM 62 O MET y5009 11.986 -37.496 -27.836 1.00 -1.50 \ ATOM 63 CB MET y5009 11.951 -40.667 -26.784 1.00 -1.50 \ ATOM 64 CG MET y5009 12.891 -41.694 -27.431 1.00 -1.50 \ ATOM 65 SD MET y5009 12.089 -42.867 -28.582 1.00 -1.50 \ ATOM 66 CE MET y5009 11.979 -44.330 -27.563 1.00 -1.50 \ ATOM 67 N ILE y5010 10.622 -37.969 -26.117 1.00 0.64 \ ATOM 68 CA ILE y5010 9.721 -36.865 -26.450 1.00 0.64 \ ATOM 69 C ILE y5010 10.558 -35.609 -26.406 1.00 0.64 \ ATOM 70 O ILE y5010 10.294 -34.666 -27.132 1.00 0.64 \ ATOM 71 CB ILE y5010 8.575 -36.691 -25.431 1.00 0.64 \ ATOM 72 CG1 ILE y5010 8.924 -35.559 -24.453 1.00 0.64 \ ATOM 73 CG2 ILE y5010 8.284 -38.017 -24.751 1.00 0.64 \ ATOM 74 CD1 ILE y5010 8.364 -35.703 -23.062 1.00 0.64 \ ATOM 75 N GLY y5011 11.569 -35.614 -25.539 1.00 -1.50 \ ATOM 76 CA GLY y5011 12.449 -34.469 -25.393 1.00 -1.50 \ ATOM 77 C GLY y5011 13.228 -34.175 -26.656 1.00 -1.50 \ ATOM 78 O GLY y5011 12.911 -33.243 -27.389 1.00 -1.50 \ ATOM 79 N ILE y5012 14.246 -34.993 -26.911 1.00 0.64 \ ATOM 80 CA ILE y5012 15.106 -34.845 -28.088 1.00 0.64 \ ATOM 81 C ILE y5012 14.288 -34.635 -29.375 1.00 0.64 \ ATOM 82 O ILE y5012 14.833 -34.284 -30.429 1.00 0.64 \ ATOM 83 CB ILE y5012 16.022 -36.075 -28.231 1.00 0.64 \ ATOM 84 CG1 ILE y5012 16.842 -36.005 -29.517 1.00 0.64 \ ATOM 85 CG2 ILE y5012 15.197 -37.342 -28.233 1.00 0.64 \ ATOM 86 CD1 ILE y5012 17.746 -37.163 -29.760 1.00 0.64 \ ATOM 87 N ALA y5013 12.981 -34.848 -29.278 1.00 0.64 \ ATOM 88 CA ALA y5013 12.039 -34.699 -30.376 1.00 0.64 \ ATOM 89 C ALA y5013 11.827 -33.267 -30.859 1.00 0.64 \ ATOM 90 O ALA y5013 12.222 -32.905 -31.969 1.00 0.64 \ ATOM 91 CB ALA y5013 10.709 -35.317 -29.944 1.00 0.64 \ ATOM 92 N GLY y5014 11.272 -32.422 -29.995 1.00 0.64 \ ATOM 93 CA GLY y5014 10.976 -31.025 -30.344 1.00 0.64 \ ATOM 94 C GLY y5014 12.160 -30.100 -30.574 1.00 0.64 \ ATOM 95 O GLY y5014 11.969 -29.028 -31.137 1.00 0.64 \ ATOM 96 N PRO y5015 13.379 -30.480 -30.092 1.00 0.64 \ ATOM 97 CA PRO y5015 14.615 -29.699 -30.279 1.00 0.64 \ ATOM 98 C PRO y5015 15.407 -30.249 -31.488 1.00 0.64 \ ATOM 99 O PRO y5015 16.293 -29.573 -32.025 1.00 0.64 \ ATOM 100 CB PRO y5015 15.391 -29.890 -28.959 1.00 0.64 \ ATOM 101 CG PRO y5015 14.382 -30.294 -28.005 1.00 0.64 \ ATOM 102 CD PRO y5015 13.485 -31.213 -28.814 1.00 0.64 \ ATOM 103 N MET y5016 15.071 -31.464 -31.928 1.00 -1.50 \ ATOM 104 CA MET y5016 15.771 -32.000 -33.096 1.00 -1.50 \ ATOM 105 C MET y5016 14.895 -31.917 -34.349 1.00 -1.50 \ ATOM 106 O MET y5016 15.277 -32.392 -35.416 1.00 -1.50 \ ATOM 107 CB MET y5016 16.281 -33.433 -32.864 1.00 -1.50 \ ATOM 108 CG MET y5016 17.443 -33.562 -31.847 1.00 -1.50 \ ATOM 109 SD MET y5016 19.104 -32.959 -32.368 1.00 -1.50 \ ATOM 110 CE MET y5016 19.204 -31.279 -31.566 1.00 -1.50 \ ATOM 111 N ILE y5017 13.719 -31.307 -34.206 1.00 -1.50 \ ATOM 112 CA ILE y5017 12.844 -31.108 -35.345 1.00 -1.50 \ ATOM 113 C ILE y5017 13.271 -29.744 -35.873 1.00 -1.50 \ ATOM 114 O ILE y5017 12.920 -29.346 -36.989 1.00 -1.50 \ ATOM 115 CB ILE y5017 11.330 -31.101 -34.979 1.00 -1.50 \ ATOM 116 CG1 ILE y5017 10.905 -29.738 -34.412 1.00 -1.50 \ ATOM 117 CG2 ILE y5017 11.057 -32.197 -34.008 1.00 -1.50 \ ATOM 118 CD1 ILE y5017 10.468 -28.759 -35.480 1.00 -1.50 \ ATOM 119 N ILE y5018 14.004 -29.013 -35.042 1.00 0.64 \ ATOM 120 CA ILE y5018 14.518 -27.731 -35.451 1.00 0.64 \ ATOM 121 C ILE y5018 15.903 -27.965 -36.058 1.00 0.64 \ ATOM 122 O ILE y5018 16.371 -27.156 -36.859 1.00 0.64 \ ATOM 123 CB ILE y5018 14.580 -26.724 -34.280 1.00 0.64 \ ATOM 124 CG1 ILE y5018 14.137 -25.354 -34.800 1.00 0.64 \ ATOM 125 CG2 ILE y5018 15.985 -26.668 -33.676 1.00 0.64 \ ATOM 126 CD1 ILE y5018 14.390 -24.221 -33.866 1.00 0.64 \ ATOM 127 N PHE y5019 16.538 -29.082 -35.678 1.00 0.64 \ ATOM 128 CA PHE y5019 17.860 -29.495 -36.197 1.00 0.64 \ ATOM 129 C PHE y5019 17.736 -29.970 -37.656 1.00 0.64 \ ATOM 130 O PHE y5019 18.580 -29.669 -38.498 1.00 0.64 \ ATOM 131 CB PHE y5019 18.450 -30.638 -35.336 1.00 0.64 \ ATOM 132 CG PHE y5019 19.731 -31.258 -35.897 1.00 0.64 \ ATOM 133 CD1 PHE y5019 20.191 -32.486 -35.421 1.00 0.64 \ ATOM 134 CD2 PHE y5019 20.467 -30.626 -36.897 1.00 0.64 \ ATOM 135 CE1 PHE y5019 21.358 -33.071 -35.937 1.00 0.64 \ ATOM 136 CE2 PHE y5019 21.625 -31.198 -37.415 1.00 0.64 \ ATOM 137 CZ PHE y5019 22.072 -32.422 -36.936 1.00 0.64 \ ATOM 138 N LEU y5020 16.689 -30.742 -37.928 1.00 0.64 \ ATOM 139 CA LEU y5020 16.435 -31.248 -39.270 1.00 0.64 \ ATOM 140 C LEU y5020 15.924 -30.100 -40.160 1.00 0.64 \ ATOM 141 O LEU y5020 15.975 -30.196 -41.384 1.00 0.64 \ ATOM 142 CB LEU y5020 15.421 -32.413 -39.227 1.00 0.64 \ ATOM 143 CG LEU y5020 13.901 -32.231 -39.050 1.00 0.64 \ ATOM 144 CD1 LEU y5020 13.236 -32.074 -40.420 1.00 0.64 \ ATOM 145 CD2 LEU y5020 13.318 -33.441 -38.325 1.00 0.64 \ ATOM 146 N LEU y5021 15.425 -29.028 -39.533 1.00 0.64 \ ATOM 147 CA LEU y5021 14.904 -27.855 -40.249 1.00 0.64 \ ATOM 148 C LEU y5021 15.957 -26.815 -40.625 1.00 0.64 \ ATOM 149 O LEU y5021 15.737 -25.993 -41.521 1.00 0.64 \ ATOM 150 CB LEU y5021 13.791 -27.173 -39.442 1.00 0.64 \ ATOM 151 CG LEU y5021 12.356 -27.495 -39.884 1.00 0.64 \ ATOM 152 CD1 LEU y5021 12.085 -26.897 -41.263 1.00 0.64 \ ATOM 153 CD2 LEU y5021 12.150 -29.002 -39.899 1.00 0.64 \ ATOM 154 N ALA y5022 17.089 -26.839 -39.927 1.00 0.64 \ ATOM 155 CA ALA y5022 18.179 -25.908 -40.203 1.00 0.64 \ ATOM 156 C ALA y5022 19.183 -26.516 -41.189 1.00 0.64 \ ATOM 157 O ALA y5022 19.822 -25.794 -41.960 1.00 0.64 \ ATOM 158 CB ALA y5022 18.888 -25.514 -38.906 1.00 0.64 \ ATOM 159 N VAL y5023 19.337 -27.837 -41.145 1.00 -1.50 \ ATOM 160 CA VAL y5023 20.253 -28.516 -42.050 1.00 -1.50 \ ATOM 161 C VAL y5023 19.487 -28.756 -43.355 1.00 -1.50 \ ATOM 162 O VAL y5023 20.080 -28.924 -44.421 1.00 -1.50 \ ATOM 163 CB VAL y5023 20.794 -29.847 -41.427 1.00 -1.50 \ ATOM 164 CG1 VAL y5023 19.711 -30.913 -41.422 1.00 -1.50 \ ATOM 165 CG2 VAL y5023 22.047 -30.304 -42.168 1.00 -1.50 \ ATOM 166 N ARG y5024 18.159 -28.775 -43.260 1.00 0.64 \ ATOM 167 CA ARG y5024 17.325 -28.912 -44.450 1.00 0.64 \ ATOM 168 C ARG y5024 17.087 -27.462 -44.818 1.00 0.64 \ ATOM 169 O ARG y5024 16.659 -27.151 -45.928 1.00 0.64 \ ATOM 170 CB ARG y5024 15.974 -29.586 -44.161 1.00 0.64 \ ATOM 171 CG ARG y5024 15.917 -31.083 -44.438 1.00 0.64 \ ATOM 172 CD ARG y5024 14.663 -31.445 -45.225 1.00 0.64 \ ATOM 173 NE ARG y5024 14.334 -32.866 -45.161 1.00 0.64 \ ATOM 174 CZ ARG y5024 15.143 -33.852 -45.535 1.00 0.64 \ ATOM 175 NH1 ARG y5024 16.354 -33.590 -46.007 1.00 0.64 \ ATOM 176 NH2 ARG y5024 14.732 -35.109 -45.442 1.00 0.64 \ ATOM 177 N ARG y5025 17.383 -26.579 -43.861 1.00 -1.50 \ ATOM 178 CA ARG y5025 17.221 -25.138 -44.017 1.00 -1.50 \ ATOM 179 C ARG y5025 15.758 -24.894 -44.308 1.00 -1.50 \ ATOM 180 O ARG y5025 15.166 -25.600 -45.118 1.00 -1.50 \ ATOM 181 CB ARG y5025 18.082 -24.642 -45.170 1.00 -1.50 \ ATOM 182 CG ARG y5025 18.054 -23.156 -45.388 1.00 -1.50 \ ATOM 183 CD ARG y5025 18.862 -22.831 -46.632 1.00 -1.50 \ ATOM 184 NE ARG y5025 20.192 -23.443 -46.601 1.00 -1.50 \ ATOM 185 CZ ARG y5025 21.024 -23.492 -47.640 1.00 -1.50 \ ATOM 186 NH1 ARG y5025 20.672 -22.967 -48.804 1.00 -1.50 \ ATOM 187 NH2 ARG y5025 22.215 -24.067 -47.519 1.00 -1.50 \ ATOM 188 N GLY y5026 15.153 -23.908 -43.663 1.00 0.64 \ ATOM 189 CA GLY y5026 13.748 -23.700 -43.938 1.00 0.64 \ ATOM 190 C GLY y5026 13.029 -22.596 -43.199 1.00 0.64 \ ATOM 191 O GLY y5026 12.162 -22.861 -42.365 1.00 0.64 \ ATOM 192 N ASN y5027 13.381 -21.357 -43.525 1.00 -1.50 \ ATOM 193 CA ASN y5027 12.769 -20.173 -42.936 1.00 -1.50 \ ATOM 194 C ASN y5027 12.173 -20.410 -41.540 1.00 -1.50 \ ATOM 195 O ASN y5027 10.945 -20.440 -41.381 1.00 -1.50 \ ATOM 196 CB ASN y5027 11.680 -19.646 -43.880 1.00 -1.50 \ ATOM 197 CG ASN y5027 11.478 -18.146 -43.762 1.00 -1.50 \ ATOM 198 OD1 ASN y5027 12.379 -17.359 -44.064 1.00 -1.50 \ ATOM 199 ND2 ASN y5027 10.288 -17.742 -43.336 1.00 -1.50 \ ATOM 200 N LEU y5028 13.041 -20.584 -40.538 1.00 0.64 \ ATOM 201 CA LEU y5028 12.590 -20.790 -39.159 1.00 0.64 \ ATOM 202 C LEU y5028 12.282 -19.428 -38.527 1.00 0.64 \ ATOM 203 O LEU y5028 12.653 -18.393 -39.120 1.00 0.64 \ ATOM 204 CB LEU y5028 13.666 -21.491 -38.304 1.00 0.64 \ ATOM 205 CG LEU y5028 14.664 -22.489 -38.899 1.00 0.64 \ ATOM 206 CD1 LEU y5028 15.931 -21.743 -39.294 1.00 0.64 \ ATOM 207 CD2 LEU y5028 14.998 -23.563 -37.873 1.00 0.64 \ ATOM 208 OXT LEU y5028 11.690 -19.420 -37.431 1.00 0.64 \ """, "e3a0by1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e3a0by1_csv", state=0, origin=1) cmd.zoom("e3a0by1_csv", animate=-1)