cmd.read_pdbstr("""\ ATOM 1 N THR X 11 -30.091 53.313 46.603 1.00 -1.00 \ ATOM 2 CA THR X 11 -31.113 54.378 46.403 1.00 -1.00 \ ATOM 3 C THR X 11 -30.826 55.580 47.332 1.00 -1.00 \ ATOM 4 O THR X 11 -31.408 55.711 48.415 1.00 -1.00 \ ATOM 5 CB THR X 11 -32.568 53.779 46.621 1.00 -1.00 \ ATOM 6 OG1 THR X 11 -33.550 54.689 46.110 1.00 -1.00 \ ATOM 7 CG2 THR X 11 -32.860 53.515 48.094 1.00 -1.00 \ ATOM 8 N ILE X 12 -29.907 56.444 46.884 1.00 -1.00 \ ATOM 9 CA ILE X 12 -29.439 57.657 47.600 1.00 -1.00 \ ATOM 10 C ILE X 12 -28.815 57.343 48.962 1.00 -1.00 \ ATOM 11 O ILE X 12 -28.807 58.171 49.878 1.00 -1.00 \ ATOM 12 CB ILE X 12 -30.558 58.721 47.801 1.00 -1.00 \ ATOM 13 CG1 ILE X 12 -31.345 58.460 49.085 1.00 -1.00 \ ATOM 14 CG2 ILE X 12 -31.473 58.721 46.588 1.00 -1.00 \ ATOM 15 CD1 ILE X 12 -31.279 59.612 50.095 1.00 -1.00 \ ATOM 16 N THR X 13 -28.268 56.140 49.070 1.00 0.46 \ ATOM 17 CA THR X 13 -27.649 55.677 50.293 1.00 0.46 \ ATOM 18 C THR X 13 -26.608 56.697 50.709 1.00 0.46 \ ATOM 19 O THR X 13 -25.870 57.223 49.874 1.00 0.46 \ ATOM 20 CB THR X 13 -26.975 54.328 50.043 1.00 0.46 \ ATOM 21 OG1 THR X 13 -27.533 53.759 48.848 1.00 0.46 \ ATOM 22 CG2 THR X 13 -27.233 53.376 51.208 1.00 0.46 \ ATOM 23 N PRO X 14 -26.512 56.971 52.015 1.00 1.80 \ ATOM 24 CA PRO X 14 -25.528 57.948 52.487 1.00 1.80 \ ATOM 25 C PRO X 14 -24.227 57.854 51.700 1.00 1.80 \ ATOM 26 O PRO X 14 -23.576 58.866 51.440 1.00 1.80 \ ATOM 27 CB PRO X 14 -25.351 57.573 53.954 1.00 1.80 \ ATOM 28 CG PRO X 14 -26.735 57.105 54.340 1.00 1.80 \ ATOM 29 CD PRO X 14 -27.187 56.301 53.141 1.00 1.80 \ ATOM 30 N SER X 15 -23.870 56.635 51.309 1.00 1.80 \ ATOM 31 CA SER X 15 -22.663 56.398 50.533 1.00 1.80 \ ATOM 32 C SER X 15 -22.809 56.933 49.126 1.00 1.80 \ ATOM 33 O SER X 15 -21.935 57.632 48.628 1.00 1.80 \ ATOM 34 CB SER X 15 -22.356 54.906 50.445 1.00 1.80 \ ATOM 35 OG SER X 15 -22.411 54.464 49.097 1.00 1.80 \ ATOM 36 N LEU X 16 -23.912 56.596 48.474 1.00 1.80 \ ATOM 37 CA LEU X 16 -24.123 57.060 47.111 1.00 1.80 \ ATOM 38 C LEU X 16 -24.062 58.573 47.049 1.00 1.80 \ ATOM 39 O LEU X 16 -23.413 59.139 46.167 1.00 1.80 \ ATOM 40 CB LEU X 16 -25.473 56.567 46.597 1.00 1.80 \ ATOM 41 CG LEU X 16 -26.020 57.113 45.287 1.00 1.80 \ ATOM 42 CD1 LEU X 16 -27.016 56.063 44.798 1.00 1.80 \ ATOM 43 CD2 LEU X 16 -26.643 58.523 45.433 1.00 1.80 \ ATOM 44 N LYS X 17 -24.755 59.212 47.989 1.00 0.25 \ ATOM 45 CA LYS X 17 -24.815 60.666 48.080 1.00 0.25 \ ATOM 46 C LYS X 17 -23.397 61.159 48.270 1.00 0.25 \ ATOM 47 O LYS X 17 -23.022 62.246 47.815 1.00 0.25 \ ATOM 48 CB LYS X 17 -25.677 61.083 49.277 1.00 0.25 \ ATOM 49 CG LYS X 17 -25.341 62.445 49.872 1.00 0.25 \ ATOM 50 CD LYS X 17 -26.018 62.608 51.230 1.00 0.25 \ ATOM 51 CE LYS X 17 -25.175 63.432 52.205 1.00 0.25 \ ATOM 52 NZ LYS X 17 -25.832 63.609 53.540 1.00 0.25 \ ATOM 53 N GLY X 18 -22.614 60.329 48.949 1.00 -0.60 \ ATOM 54 CA GLY X 18 -21.233 60.660 49.203 1.00 -0.60 \ ATOM 55 C GLY X 18 -20.564 60.812 47.858 1.00 -0.60 \ ATOM 56 O GLY X 18 -19.789 61.746 47.639 1.00 -0.60 \ ATOM 57 N PHE X 19 -20.874 59.901 46.941 1.00 1.80 \ ATOM 58 CA PHE X 19 -20.258 59.979 45.641 1.00 1.80 \ ATOM 59 C PHE X 19 -20.653 61.222 44.849 1.00 1.80 \ ATOM 60 O PHE X 19 -19.793 61.977 44.401 1.00 1.80 \ ATOM 61 CB PHE X 19 -20.550 58.755 44.785 1.00 1.80 \ ATOM 62 CG PHE X 19 -19.854 58.819 43.494 1.00 1.80 \ ATOM 63 CD1 PHE X 19 -18.471 58.770 43.459 1.00 1.80 \ ATOM 64 CD2 PHE X 19 -20.534 59.167 42.336 1.00 1.80 \ ATOM 65 CE1 PHE X 19 -17.776 59.084 42.314 1.00 1.80 \ ATOM 66 CE2 PHE X 19 -19.825 59.484 41.186 1.00 1.80 \ ATOM 67 CZ PHE X 19 -18.448 59.445 41.177 1.00 1.80 \ ATOM 68 N PHE X 20 -21.945 61.438 44.647 1.00 0.25 \ ATOM 69 CA PHE X 20 -22.347 62.621 43.906 1.00 0.25 \ ATOM 70 C PHE X 20 -21.548 63.787 44.438 1.00 0.25 \ ATOM 71 O PHE X 20 -20.921 64.522 43.687 1.00 0.25 \ ATOM 72 CB PHE X 20 -23.827 62.912 44.112 1.00 0.25 \ ATOM 73 CG PHE X 20 -24.724 62.055 43.293 1.00 0.25 \ ATOM 74 CD1 PHE X 20 -24.194 61.264 42.290 1.00 0.25 \ ATOM 75 CD2 PHE X 20 -26.103 62.073 43.481 1.00 0.25 \ ATOM 76 CE1 PHE X 20 -25.009 60.504 41.482 1.00 0.25 \ ATOM 77 CE2 PHE X 20 -26.927 61.310 42.670 1.00 0.25 \ ATOM 78 CZ PHE X 20 -26.371 60.530 41.670 1.00 0.25 \ ATOM 79 N ILE X 21 -21.562 63.933 45.753 1.00 -1.25 \ ATOM 80 CA ILE X 21 -20.838 65.007 46.392 1.00 -1.25 \ ATOM 81 C ILE X 21 -19.433 65.025 45.842 1.00 -1.25 \ ATOM 82 O ILE X 21 -18.890 66.072 45.502 1.00 -1.25 \ ATOM 83 CB ILE X 21 -20.784 64.791 47.901 1.00 -1.25 \ ATOM 84 CG1 ILE X 21 -22.066 65.328 48.535 1.00 -1.25 \ ATOM 85 CG2 ILE X 21 -19.555 65.443 48.478 1.00 -1.25 \ ATOM 86 CD1 ILE X 21 -22.079 65.304 50.048 1.00 -1.25 \ ATOM 87 N GLY X 22 -18.852 63.843 45.739 1.00 0.42 \ ATOM 88 CA GLY X 22 -17.503 63.743 45.227 1.00 0.42 \ ATOM 89 C GLY X 22 -17.418 64.181 43.785 1.00 0.42 \ ATOM 90 O GLY X 22 -16.502 64.896 43.397 1.00 0.42 \ ATOM 91 N LEU X 23 -18.373 63.747 42.979 1.00 0.35 \ ATOM 92 CA LEU X 23 -18.349 64.124 41.585 1.00 0.35 \ ATOM 93 C LEU X 23 -18.356 65.648 41.508 1.00 0.35 \ ATOM 94 O LEU X 23 -17.493 66.238 40.861 1.00 0.35 \ ATOM 95 CB LEU X 23 -19.563 63.534 40.854 1.00 0.35 \ ATOM 96 CG LEU X 23 -19.806 63.902 39.383 1.00 0.35 \ ATOM 97 CD1 LEU X 23 -20.675 62.799 38.773 1.00 0.35 \ ATOM 98 CD2 LEU X 23 -20.467 65.307 39.229 1.00 0.35 \ ATOM 99 N LEU X 24 -19.307 66.278 42.199 1.00 -1.28 \ ATOM 100 CA LEU X 24 -19.445 67.738 42.187 1.00 -1.28 \ ATOM 101 C LEU X 24 -18.162 68.469 42.575 1.00 -1.28 \ ATOM 102 O LEU X 24 -17.808 69.471 41.957 1.00 -1.28 \ ATOM 103 CB LEU X 24 -20.567 68.194 43.126 1.00 -1.28 \ ATOM 104 CG LEU X 24 -21.902 68.595 42.500 1.00 -1.28 \ ATOM 105 CD1 LEU X 24 -21.632 69.544 41.361 1.00 -1.28 \ ATOM 106 CD2 LEU X 24 -22.652 67.380 41.999 1.00 -1.28 \ ATOM 107 N SER X 25 -17.483 67.977 43.608 1.00 -0.61 \ ATOM 108 CA SER X 25 -16.239 68.578 44.049 1.00 -0.61 \ ATOM 109 C SER X 25 -15.238 68.389 42.909 1.00 -0.61 \ ATOM 110 O SER X 25 -14.449 69.280 42.594 1.00 -0.61 \ ATOM 111 CB SER X 25 -15.775 67.905 45.333 1.00 -0.61 \ ATOM 112 OG SER X 25 -16.083 66.535 45.300 1.00 -0.61 \ ATOM 113 N GLY X 26 -15.289 67.225 42.275 1.00 0.37 \ ATOM 114 CA GLY X 26 -14.392 66.957 41.167 1.00 0.37 \ ATOM 115 C GLY X 26 -14.634 67.933 40.025 1.00 0.37 \ ATOM 116 O GLY X 26 -13.703 68.523 39.474 1.00 0.37 \ ATOM 117 N ALA X 27 -15.897 68.118 39.671 1.00 0.35 \ ATOM 118 CA ALA X 27 -16.250 69.024 38.594 1.00 0.35 \ ATOM 119 C ALA X 27 -15.853 70.454 38.959 1.00 0.35 \ ATOM 120 O ALA X 27 -15.463 71.244 38.098 1.00 0.35 \ ATOM 121 CB ALA X 27 -17.742 68.931 38.327 1.00 0.35 \ ATOM 122 N VAL X 28 -15.958 70.769 40.245 1.00 1.80 \ ATOM 123 CA VAL X 28 -15.635 72.095 40.751 1.00 1.80 \ ATOM 124 C VAL X 28 -14.162 72.451 40.616 1.00 1.80 \ ATOM 125 O VAL X 28 -13.829 73.544 40.159 1.00 1.80 \ ATOM 126 CB VAL X 28 -16.061 72.243 42.244 1.00 1.80 \ ATOM 127 CG1 VAL X 28 -15.329 73.411 42.906 1.00 1.80 \ ATOM 128 CG2 VAL X 28 -17.562 72.472 42.332 1.00 1.80 \ ATOM 129 N VAL X 29 -13.283 71.535 41.004 1.00 0.37 \ ATOM 130 CA VAL X 29 -11.850 71.792 40.936 1.00 0.37 \ ATOM 131 C VAL X 29 -11.327 71.830 39.503 1.00 0.37 \ ATOM 132 O VAL X 29 -10.437 72.621 39.172 1.00 0.37 \ ATOM 133 CB VAL X 29 -11.060 70.743 41.707 1.00 0.37 \ ATOM 134 CG1 VAL X 29 -9.778 71.349 42.180 1.00 0.37 \ ATOM 135 CG2 VAL X 29 -11.873 70.223 42.868 1.00 0.37 \ ATOM 136 N LEU X 30 -11.857 70.949 38.659 1.00 0.37 \ ATOM 137 CA LEU X 30 -11.451 70.923 37.257 1.00 0.37 \ ATOM 138 C LEU X 30 -12.014 72.187 36.624 1.00 0.37 \ ATOM 139 O LEU X 30 -11.272 72.978 36.040 1.00 0.37 \ ATOM 140 CB LEU X 30 -12.032 69.706 36.543 1.00 0.37 \ ATOM 141 CG LEU X 30 -11.514 68.336 36.965 1.00 0.37 \ ATOM 142 CD1 LEU X 30 -12.492 67.302 36.473 1.00 0.37 \ ATOM 143 CD2 LEU X 30 -10.118 68.068 36.415 1.00 0.37 \ ATOM 144 N GLY X 31 -13.327 72.372 36.781 1.00 -1.27 \ ATOM 145 CA GLY X 31 -14.009 73.519 36.223 1.00 -1.27 \ ATOM 146 C GLY X 31 -13.391 74.847 36.588 1.00 -1.27 \ ATOM 147 O GLY X 31 -13.064 75.650 35.697 1.00 -1.27 \ ATOM 148 N LEU X 32 -13.221 75.087 37.886 1.00 0.25 \ ATOM 149 CA LEU X 32 -12.642 76.349 38.321 1.00 0.25 \ ATOM 150 C LEU X 32 -11.300 76.477 37.638 1.00 0.25 \ ATOM 151 O LEU X 32 -10.996 77.505 37.047 1.00 0.25 \ ATOM 152 CB LEU X 32 -12.396 76.373 39.823 1.00 0.25 \ ATOM 153 CG LEU X 32 -13.514 76.780 40.773 1.00 0.25 \ ATOM 154 CD1 LEU X 32 -12.920 77.745 41.809 1.00 0.25 \ ATOM 155 CD2 LEU X 32 -14.641 77.436 39.974 1.00 0.25 \ ATOM 156 N THR X 33 -10.523 75.400 37.672 1.00 -1.30 \ ATOM 157 CA THR X 33 -9.192 75.394 37.100 1.00 -1.30 \ ATOM 158 C THR X 33 -9.092 75.765 35.629 1.00 -1.30 \ ATOM 159 O THR X 33 -8.239 76.555 35.250 1.00 -1.30 \ ATOM 160 CB THR X 33 -8.526 74.032 37.350 1.00 -1.30 \ ATOM 161 OG1 THR X 33 -7.413 74.204 38.241 1.00 -1.30 \ ATOM 162 CG2 THR X 33 -8.054 73.424 36.045 1.00 -1.30 \ ATOM 163 N PHE X 34 -9.948 75.198 34.797 1.00 -0.63 \ ATOM 164 CA PHE X 34 -9.874 75.502 33.382 1.00 -0.63 \ ATOM 165 C PHE X 34 -10.282 76.923 33.078 1.00 -0.63 \ ATOM 166 O PHE X 34 -9.641 77.614 32.293 1.00 -0.63 \ ATOM 167 CB PHE X 34 -10.750 74.545 32.573 1.00 -0.63 \ ATOM 168 CG PHE X 34 -10.072 73.249 32.213 1.00 -0.63 \ ATOM 169 CD1 PHE X 34 -8.791 72.953 32.679 1.00 -0.63 \ ATOM 170 CD2 PHE X 34 -10.718 72.324 31.404 1.00 -0.63 \ ATOM 171 CE1 PHE X 34 -8.170 71.756 32.344 1.00 -0.63 \ ATOM 172 CE2 PHE X 34 -10.101 71.122 31.065 1.00 -0.63 \ ATOM 173 CZ PHE X 34 -8.832 70.840 31.533 1.00 -0.63 \ ATOM 174 N ALA X 35 -11.350 77.357 33.728 1.00 -0.60 \ ATOM 175 CA ALA X 35 -11.862 78.692 33.523 1.00 -0.60 \ ATOM 176 C ALA X 35 -10.788 79.733 33.769 1.00 -0.60 \ ATOM 177 O ALA X 35 -10.560 80.606 32.926 1.00 -0.60 \ ATOM 178 CB ALA X 35 -13.042 78.937 34.432 1.00 -0.60 \ ATOM 179 N VAL X 36 -10.122 79.642 34.917 1.00 -0.60 \ ATOM 180 CA VAL X 36 -9.079 80.606 35.246 1.00 -0.60 \ ATOM 181 C VAL X 36 -7.995 80.487 34.185 1.00 -0.60 \ ATOM 182 O VAL X 36 -7.408 81.483 33.756 1.00 -0.60 \ ATOM 183 CB VAL X 36 -8.462 80.344 36.654 1.00 -0.60 \ ATOM 184 CG1 VAL X 36 -7.265 79.416 36.550 1.00 -0.60 \ ATOM 185 CG2 VAL X 36 -8.057 81.656 37.295 1.00 -0.60 \ ATOM 186 N LEU X 37 -7.765 79.253 33.748 1.00 -1.30 \ ATOM 187 CA LEU X 37 -6.756 78.947 32.746 1.00 -1.30 \ ATOM 188 C LEU X 37 -7.029 79.497 31.352 1.00 -1.30 \ ATOM 189 O LEU X 37 -6.107 79.963 30.673 1.00 -1.30 \ ATOM 190 CB LEU X 37 -6.563 77.438 32.651 1.00 -1.30 \ ATOM 191 CG LEU X 37 -5.184 76.944 33.072 1.00 -1.30 \ ATOM 192 CD1 LEU X 37 -4.914 75.604 32.421 1.00 -1.30 \ ATOM 193 CD2 LEU X 37 -4.141 77.943 32.636 1.00 -1.30 \ ATOM 194 N ILE X 38 -8.277 79.407 30.904 1.00 0.35 \ ATOM 195 CA ILE X 38 -8.613 79.920 29.586 1.00 0.35 \ ATOM 196 C ILE X 38 -8.521 81.430 29.712 1.00 0.35 \ ATOM 197 O ILE X 38 -8.168 82.138 28.765 1.00 0.35 \ ATOM 198 CB ILE X 38 -10.048 79.546 29.162 1.00 0.35 \ ATOM 199 CG1 ILE X 38 -10.423 78.175 29.719 1.00 0.35 \ ATOM 200 CG2 ILE X 38 -10.142 79.519 27.643 1.00 0.35 \ ATOM 201 CD1 ILE X 38 -9.490 77.083 29.313 1.00 0.35 \ ATOM 202 N ALA X 39 -8.835 81.902 30.914 1.00 -0.57 \ ATOM 203 CA ALA X 39 -8.814 83.318 31.233 1.00 -0.57 \ ATOM 204 C ALA X 39 -7.437 83.938 31.066 1.00 -0.57 \ ATOM 205 O ALA X 39 -7.270 84.863 30.271 1.00 -0.57 \ ATOM 206 CB ALA X 39 -9.297 83.525 32.651 1.00 -0.57 \ ATOM 207 N ILE X 40 -6.453 83.431 31.806 1.00 -0.60 \ ATOM 208 CA ILE X 40 -5.097 83.978 31.733 1.00 -0.60 \ ATOM 209 C ILE X 40 -4.449 83.753 30.375 1.00 -0.60 \ ATOM 210 O ILE X 40 -3.628 84.556 29.931 1.00 -0.60 \ ATOM 211 CB ILE X 40 -4.169 83.392 32.836 1.00 -0.60 \ ATOM 212 CG1 ILE X 40 -4.769 83.665 34.223 1.00 -0.60 \ ATOM 213 CG2 ILE X 40 -2.787 84.048 32.759 1.00 -0.60 \ ATOM 214 CD1 ILE X 40 -3.912 83.176 35.390 1.00 -0.60 \ ATOM 215 N SER X 41 -4.810 82.654 29.722 1.00 0.37 \ ATOM 216 CA SER X 41 -4.273 82.355 28.404 1.00 0.37 \ ATOM 217 C SER X 41 -4.814 83.365 27.401 1.00 0.37 \ ATOM 218 O SER X 41 -4.156 83.675 26.404 1.00 0.37 \ ATOM 219 CB SER X 41 -4.691 80.963 27.967 1.00 0.37 \ ATOM 220 OG SER X 41 -5.331 81.047 26.711 1.00 0.37 \ ATOM 221 N GLN X 42 -6.034 83.837 27.667 1.00 -0.63 \ ATOM 222 CA GLN X 42 -6.730 84.825 26.837 1.00 -0.63 \ ATOM 223 C GLN X 42 -6.096 86.213 26.969 1.00 -0.63 \ ATOM 224 O GLN X 42 -6.196 87.032 26.052 1.00 -0.63 \ ATOM 225 CB GLN X 42 -8.205 84.903 27.236 1.00 -0.63 \ ATOM 226 CG GLN X 42 -9.092 85.665 26.262 1.00 -0.63 \ ATOM 227 CD GLN X 42 -10.029 84.752 25.472 1.00 -0.63 \ ATOM 228 OE1 GLN X 42 -9.794 84.461 24.292 1.00 -0.63 \ ATOM 229 NE2 GLN X 42 -11.096 84.290 26.128 1.00 -0.63 \ ATOM 230 N ILE X 43 -5.487 86.475 28.130 1.00 -1.30 \ ATOM 231 CA ILE X 43 -4.790 87.737 28.408 1.00 -1.30 \ ATOM 232 C ILE X 43 -3.347 87.620 27.888 1.00 -1.30 \ ATOM 233 O ILE X 43 -2.373 87.748 28.635 1.00 -1.30 \ ATOM 234 CB ILE X 43 -4.822 88.071 29.939 1.00 -1.30 \ ATOM 235 CG1 ILE X 43 -6.169 88.696 30.302 1.00 -1.30 \ ATOM 236 CG2 ILE X 43 -3.723 89.058 30.314 1.00 -1.30 \ ATOM 237 CD1 ILE X 43 -7.362 87.878 29.903 1.00 -1.30 \ ATOM 238 N ASP X 44 -3.235 87.337 26.590 1.00 -0.63 \ ATOM 239 CA ASP X 44 -1.943 87.198 25.927 1.00 -0.63 \ ATOM 240 C ASP X 44 -2.082 86.882 24.428 1.00 -0.63 \ ATOM 241 O ASP X 44 -1.091 86.449 23.787 1.00 -0.63 \ ATOM 242 CB ASP X 44 -1.131 86.109 26.612 1.00 -0.63 \ ATOM 243 CG ASP X 44 0.346 86.282 26.392 1.00 -0.63 \ ATOM 244 OD1 ASP X 44 0.767 86.376 25.214 1.00 -0.63 \ ATOM 245 OD2 ASP X 44 1.081 86.325 27.401 1.00 -0.63 \ ATOM 246 OXT ASP X 44 -3.191 87.089 23.894 1.00 -0.63 \ """, "e3a0hX1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e3a0hX1_csv", state=0, origin=1) cmd.zoom("e3a0hX1_csv", animate=-1)