cmd.read_pdbstr("""\ ATOM 1 N ARG B 40 -17.669 -17.507 -29.111 1.00 0.34 \ ATOM 2 CA ARG B 40 -17.179 -17.945 -27.767 1.00 0.34 \ ATOM 3 C ARG B 40 -15.691 -18.334 -27.787 1.00 0.34 \ ATOM 4 O ARG B 40 -15.176 -18.742 -28.826 1.00 0.34 \ ATOM 5 CB ARG B 40 -18.034 -19.106 -27.266 1.00 0.34 \ ATOM 6 CG ARG B 40 -17.914 -20.387 -28.087 1.00 0.34 \ ATOM 7 CD ARG B 40 -19.278 -20.934 -28.555 1.00 0.34 \ ATOM 8 NE ARG B 40 -20.385 -20.567 -27.674 1.00 0.34 \ ATOM 9 CZ ARG B 40 -21.423 -19.808 -28.022 1.00 0.34 \ ATOM 10 NH1 ARG B 40 -21.537 -19.327 -29.254 1.00 0.34 \ ATOM 11 NH2 ARG B 40 -22.364 -19.538 -27.128 1.00 0.34 \ ATOM 12 N CYS B 41 -15.006 -18.202 -26.649 1.00 0.34 \ ATOM 13 CA CYS B 41 -13.594 -18.604 -26.533 1.00 0.34 \ ATOM 14 C CYS B 41 -13.454 -20.117 -26.461 1.00 0.34 \ ATOM 15 O CYS B 41 -14.228 -20.776 -25.771 1.00 0.34 \ ATOM 16 CB CYS B 41 -12.945 -17.979 -25.289 1.00 0.34 \ ATOM 17 SG CYS B 41 -11.352 -18.751 -24.797 1.00 0.34 \ ATOM 18 N TRP B 42 -12.454 -20.662 -27.154 1.00 0.34 \ ATOM 19 CA TRP B 42 -12.219 -22.113 -27.166 1.00 0.34 \ ATOM 20 C TRP B 42 -11.720 -22.626 -25.820 1.00 0.34 \ ATOM 21 O TRP B 42 -11.597 -23.828 -25.612 1.00 0.34 \ ATOM 22 CB TRP B 42 -11.249 -22.525 -28.285 1.00 0.34 \ ATOM 23 CG TRP B 42 -9.835 -22.050 -28.095 1.00 0.34 \ ATOM 24 CD1 TRP B 42 -9.280 -20.913 -28.609 1.00 0.34 \ ATOM 25 CD2 TRP B 42 -8.796 -22.696 -27.342 1.00 0.34 \ ATOM 26 NE1 TRP B 42 -7.966 -20.806 -28.222 1.00 0.34 \ ATOM 27 CE2 TRP B 42 -7.643 -21.883 -27.441 1.00 0.34 \ ATOM 28 CE3 TRP B 42 -8.728 -23.874 -26.589 1.00 0.34 \ ATOM 29 CZ2 TRP B 42 -6.433 -22.216 -26.817 1.00 0.34 \ ATOM 30 CZ3 TRP B 42 -7.526 -24.203 -25.969 1.00 0.34 \ ATOM 31 CH2 TRP B 42 -6.395 -23.378 -26.089 1.00 0.34 \ ATOM 32 N ASN B 43 -11.437 -21.708 -24.907 1.00 0.34 \ ATOM 33 CA ASN B 43 -10.904 -22.083 -23.612 1.00 0.34 \ ATOM 34 C ASN B 43 -11.900 -21.840 -22.469 1.00 0.34 \ ATOM 35 O ASN B 43 -12.209 -22.764 -21.714 1.00 0.34 \ ATOM 36 CB ASN B 43 -9.573 -21.370 -23.369 1.00 0.34 \ ATOM 37 CG ASN B 43 -8.603 -22.202 -22.558 1.00 0.34 \ ATOM 38 OD1 ASN B 43 -8.793 -23.409 -22.366 1.00 0.34 \ ATOM 39 ND2 ASN B 43 -7.548 -21.558 -22.077 1.00 0.34 \ ATOM 40 N CYS B 44 -12.397 -20.605 -22.350 1.00 0.34 \ ATOM 41 CA CYS B 44 -13.424 -20.255 -21.360 1.00 0.34 \ ATOM 42 C CYS B 44 -14.802 -20.498 -21.933 1.00 0.34 \ ATOM 43 O CYS B 44 -15.598 -21.222 -21.358 1.00 0.34 \ ATOM 44 CB CYS B 44 -13.356 -18.777 -20.981 1.00 0.34 \ ATOM 45 SG CYS B 44 -11.723 -18.079 -20.709 1.00 0.34 \ ATOM 46 N GLY B 45 -15.066 -19.877 -23.080 1.00 0.34 \ ATOM 47 CA GLY B 45 -16.412 -19.774 -23.630 1.00 0.34 \ ATOM 48 C GLY B 45 -16.932 -18.358 -23.452 1.00 0.34 \ ATOM 49 O GLY B 45 -18.148 -18.126 -23.469 1.00 0.34 \ ATOM 50 N GLY B 46 -16.002 -17.417 -23.278 1.00 -2.83 \ ATOM 51 CA GLY B 46 -16.325 -16.013 -23.042 1.00 -2.83 \ ATOM 52 C GLY B 46 -16.902 -15.316 -24.258 1.00 -2.83 \ ATOM 53 O GLY B 46 -16.440 -15.521 -25.379 1.00 -2.83 \ ATOM 54 N GLU B 53 -12.070 -4.479 -33.395 1.00 -2.83 \ ATOM 55 CA GLU B 53 -11.984 -5.619 -34.294 1.00 -2.83 \ ATOM 56 C GLU B 53 -10.890 -6.601 -33.866 1.00 -2.83 \ ATOM 57 O GLU B 53 -11.028 -7.807 -34.074 1.00 -2.83 \ ATOM 58 CB GLU B 53 -11.729 -5.141 -35.727 1.00 -2.83 \ ATOM 59 CG GLU B 53 -11.844 -6.222 -36.808 1.00 -2.83 \ ATOM 60 CD GLU B 53 -13.194 -6.236 -37.519 1.00 -2.83 \ ATOM 61 OE1 GLU B 53 -13.695 -5.155 -37.900 1.00 -2.83 \ ATOM 62 OE2 GLU B 53 -13.746 -7.338 -37.718 1.00 -2.83 \ ATOM 63 N ASP B 54 -9.815 -6.086 -33.268 1.00 0.34 \ ATOM 64 CA ASP B 54 -8.623 -6.892 -32.963 1.00 0.34 \ ATOM 65 C ASP B 54 -8.824 -7.906 -31.830 1.00 0.34 \ ATOM 66 O ASP B 54 -8.386 -7.681 -30.706 1.00 0.34 \ ATOM 67 CB ASP B 54 -7.427 -5.982 -32.650 1.00 0.34 \ ATOM 68 CG ASP B 54 -6.760 -5.417 -33.902 1.00 0.34 \ ATOM 69 OD1 ASP B 54 -7.017 -5.927 -35.017 1.00 0.34 \ ATOM 70 OD2 ASP B 54 -5.962 -4.462 -33.767 1.00 0.34 \ ATOM 71 N ARG B 55 -9.456 -9.035 -32.138 1.00 0.34 \ ATOM 72 CA ARG B 55 -9.781 -10.048 -31.125 1.00 0.34 \ ATOM 73 C ARG B 55 -8.787 -11.216 -31.119 1.00 0.34 \ ATOM 74 O ARG B 55 -9.175 -12.377 -31.288 1.00 0.34 \ ATOM 75 CB ARG B 55 -11.207 -10.579 -31.338 1.00 0.34 \ ATOM 76 CG ARG B 55 -12.257 -9.505 -31.640 1.00 0.34 \ ATOM 77 CD ARG B 55 -13.398 -10.034 -32.517 1.00 0.34 \ ATOM 78 NE ARG B 55 -13.999 -8.964 -33.318 1.00 0.34 \ ATOM 79 CZ ARG B 55 -14.933 -8.113 -32.889 1.00 0.34 \ ATOM 80 NH1 ARG B 55 -15.402 -8.184 -31.647 1.00 0.34 \ ATOM 81 NH2 ARG B 55 -15.401 -7.180 -33.709 1.00 0.34 \ ATOM 82 N PHE B 56 -7.507 -10.910 -30.907 1.00 0.34 \ ATOM 83 CA PHE B 56 -6.461 -11.943 -30.912 1.00 0.34 \ ATOM 84 C PHE B 56 -6.419 -12.792 -29.644 1.00 0.34 \ ATOM 85 O PHE B 56 -6.272 -14.019 -29.717 1.00 0.34 \ ATOM 86 CB PHE B 56 -5.082 -11.343 -31.199 1.00 0.34 \ ATOM 87 CG PHE B 56 -4.997 -10.650 -32.520 1.00 0.34 \ ATOM 88 CD1 PHE B 56 -5.039 -11.380 -33.702 1.00 0.34 \ ATOM 89 CD2 PHE B 56 -4.896 -9.266 -32.586 1.00 0.34 \ ATOM 90 CE1 PHE B 56 -4.984 -10.741 -34.931 1.00 0.34 \ ATOM 91 CE2 PHE B 56 -4.838 -8.619 -33.809 1.00 0.34 \ ATOM 92 CZ PHE B 56 -4.882 -9.357 -34.983 1.00 0.34 \ ATOM 93 N PHE B 57 -6.566 -12.147 -28.489 1.00 0.34 \ ATOM 94 CA PHE B 57 -6.400 -12.840 -27.209 1.00 0.34 \ ATOM 95 C PHE B 57 -7.620 -12.770 -26.311 1.00 0.34 \ ATOM 96 O PHE B 57 -8.245 -11.722 -26.202 1.00 0.34 \ ATOM 97 CB PHE B 57 -5.174 -12.291 -26.474 1.00 0.34 \ ATOM 98 CG PHE B 57 -3.889 -12.525 -27.201 1.00 0.34 \ ATOM 99 CD1 PHE B 57 -3.367 -13.807 -27.314 1.00 0.34 \ ATOM 100 CD2 PHE B 57 -3.211 -11.473 -27.786 1.00 0.34 \ ATOM 101 CE1 PHE B 57 -2.184 -14.031 -27.991 1.00 0.34 \ ATOM 102 CE2 PHE B 57 -2.027 -11.690 -28.463 1.00 0.34 \ ATOM 103 CZ PHE B 57 -1.509 -12.969 -28.564 1.00 0.34 \ ATOM 104 N CYS B 58 -7.943 -13.884 -25.659 1.00 0.34 \ ATOM 105 CA CYS B 58 -9.121 -13.945 -24.798 1.00 0.34 \ ATOM 106 C CYS B 58 -8.924 -13.124 -23.527 1.00 0.34 \ ATOM 107 O CYS B 58 -8.020 -13.416 -22.735 1.00 0.34 \ ATOM 108 CB CYS B 58 -9.465 -15.389 -24.452 1.00 0.34 \ ATOM 109 SG CYS B 58 -10.626 -15.613 -23.067 1.00 0.34 \ ATOM 110 N PRO B 59 -9.777 -12.097 -23.326 1.00 0.34 \ ATOM 111 CA PRO B 59 -9.575 -11.158 -22.233 1.00 0.34 \ ATOM 112 C PRO B 59 -9.705 -11.849 -20.898 1.00 0.34 \ ATOM 113 O PRO B 59 -9.258 -11.321 -19.876 1.00 0.34 \ ATOM 114 CB PRO B 59 -10.707 -10.138 -22.418 1.00 0.34 \ ATOM 115 CG PRO B 59 -11.718 -10.812 -23.239 1.00 0.34 \ ATOM 116 CD PRO B 59 -10.976 -11.765 -24.118 1.00 0.34 \ ATOM 117 N GLN B 60 -10.299 -13.035 -20.925 1.00 0.34 \ ATOM 118 CA GLN B 60 -10.614 -13.756 -19.704 1.00 0.34 \ ATOM 119 C GLN B 60 -9.486 -14.696 -19.319 1.00 0.34 \ ATOM 120 O GLN B 60 -9.196 -14.853 -18.136 1.00 0.34 \ ATOM 121 CB GLN B 60 -11.934 -14.522 -19.841 1.00 0.34 \ ATOM 122 CG GLN B 60 -13.134 -13.660 -20.252 1.00 0.34 \ ATOM 123 CD GLN B 60 -14.484 -14.333 -19.991 1.00 0.34 \ ATOM 124 OE1 GLN B 60 -14.588 -15.565 -19.927 1.00 0.34 \ ATOM 125 NE2 GLN B 60 -15.529 -13.518 -19.843 1.00 0.34 \ ATOM 126 N CYS B 61 -8.839 -15.303 -20.313 1.00 0.34 \ ATOM 127 CA CYS B 61 -7.837 -16.338 -20.039 1.00 0.34 \ ATOM 128 C CYS B 61 -6.538 -16.264 -20.859 1.00 0.34 \ ATOM 129 O CYS B 61 -5.734 -17.203 -20.815 1.00 0.34 \ ATOM 130 CB CYS B 61 -8.464 -17.730 -20.159 1.00 0.34 \ ATOM 131 SG CYS B 61 -8.525 -18.419 -21.820 1.00 0.34 \ ATOM 132 N ARG B 62 -6.347 -15.170 -21.601 1.00 0.34 \ ATOM 133 CA ARG B 62 -5.088 -14.881 -22.304 1.00 0.34 \ ATOM 134 C ARG B 62 -4.810 -15.756 -23.529 1.00 0.34 \ ATOM 135 O ARG B 62 -3.782 -15.595 -24.198 1.00 0.34 \ ATOM 136 CB ARG B 62 -3.897 -14.961 -21.335 1.00 0.34 \ ATOM 137 CG ARG B 62 -2.745 -14.044 -21.693 1.00 0.34 \ ATOM 138 CD ARG B 62 -1.529 -14.257 -20.804 1.00 0.34 \ ATOM 139 NE ARG B 62 -0.323 -13.717 -21.431 1.00 0.34 \ ATOM 140 CZ ARG B 62 0.306 -12.599 -21.070 1.00 0.34 \ ATOM 141 NH1 ARG B 62 -0.121 -11.862 -20.050 1.00 0.34 \ ATOM 142 NH2 ARG B 62 1.385 -12.217 -21.738 1.00 0.34 \ ATOM 143 N ALA B 63 -5.717 -16.682 -23.824 1.00 0.34 \ ATOM 144 CA ALA B 63 -5.478 -17.663 -24.882 1.00 0.34 \ ATOM 145 C ALA B 63 -5.694 -17.050 -26.258 1.00 0.34 \ ATOM 146 O ALA B 63 -6.520 -16.141 -26.417 1.00 0.34 \ ATOM 147 CB ALA B 63 -6.358 -18.883 -24.690 1.00 0.34 \ ATOM 148 N LEU B 64 -4.941 -17.543 -27.241 1.00 0.34 \ ATOM 149 CA LEU B 64 -5.026 -17.039 -28.607 1.00 0.34 \ ATOM 150 C LEU B 64 -6.235 -17.620 -29.325 1.00 0.34 \ ATOM 151 O LEU B 64 -6.404 -18.833 -29.387 1.00 0.34 \ ATOM 152 CB LEU B 64 -3.726 -17.334 -29.365 1.00 0.34 \ ATOM 153 CG LEU B 64 -3.552 -17.116 -30.877 1.00 0.34 \ ATOM 154 CD1 LEU B 64 -4.330 -15.943 -31.423 1.00 0.34 \ ATOM 155 CD2 LEU B 64 -2.087 -16.902 -31.174 1.00 0.34 \ ATOM 156 N GLN B 65 -7.071 -16.738 -29.862 1.00 0.34 \ ATOM 157 CA GLN B 65 -8.313 -17.138 -30.522 1.00 0.34 \ ATOM 158 C GLN B 65 -8.104 -17.501 -31.989 1.00 0.34 \ ATOM 159 O GLN B 65 -7.089 -17.138 -32.595 1.00 0.34 \ ATOM 160 CB GLN B 65 -9.350 -16.016 -30.420 1.00 0.34 \ ATOM 161 CG GLN B 65 -9.540 -15.451 -29.024 1.00 0.34 \ ATOM 162 CD GLN B 65 -10.144 -16.457 -28.067 1.00 0.34 \ ATOM 163 OE1 GLN B 65 -11.328 -16.382 -27.748 1.00 0.34 \ ATOM 164 NE2 GLN B 65 -9.335 -17.409 -27.607 1.00 0.34 \ ATOM 165 N ALA B 66 -9.077 -18.211 -32.554 1.00 0.34 \ ATOM 166 CA ALA B 66 -9.069 -18.554 -33.975 1.00 0.34 \ ATOM 167 C ALA B 66 -9.174 -17.292 -34.832 1.00 0.34 \ ATOM 168 O ALA B 66 -9.860 -16.344 -34.460 1.00 0.34 \ ATOM 169 CB ALA B 66 -10.209 -19.515 -34.292 1.00 0.34 \ """, "e3bvoB3_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e3bvoB3_csv", state=0, origin=1) cmd.zoom("e3bvoB3_csv", animate=-1)