cmd.read_pdbstr("""\ ATOM 1 N MSE A 1 3.073 16.461 -72.363 1.00 -1.00 \ ATOM 2 CA MSE A 1 4.292 17.301 -72.193 1.00 -1.00 \ ATOM 3 C MSE A 1 4.332 17.908 -70.782 1.00 -1.00 \ ATOM 4 O MSE A 1 5.322 18.527 -70.388 1.00 -1.00 \ ATOM 5 CB MSE A 1 4.328 18.399 -73.264 1.00 -1.00 \ ATOM 6 CG MSE A 1 5.398 19.480 -73.042 1.00 -1.00 \ ATOM 7 SE MSE A 1 4.750 20.952 -71.900 1.00 -1.00 \ ATOM 8 CE MSE A 1 2.918 21.152 -72.608 1.00 -1.00 \ ATOM 9 N ASN A 2 3.254 17.727 -70.018 1.00 1.02 \ ATOM 10 CA ASN A 2 3.202 18.232 -68.645 1.00 1.02 \ ATOM 11 C ASN A 2 3.176 17.100 -67.623 1.00 1.02 \ ATOM 12 O ASN A 2 2.500 16.113 -67.845 1.00 1.02 \ ATOM 13 CB ASN A 2 1.965 19.097 -68.432 1.00 1.02 \ ATOM 14 CG ASN A 2 2.054 19.930 -67.167 1.00 1.02 \ ATOM 15 OD1 ASN A 2 1.058 20.159 -66.478 1.00 1.02 \ ATOM 16 ND2 ASN A 2 3.262 20.367 -66.844 1.00 1.02 \ ATOM 17 N LEU A 3 3.867 17.265 -66.493 1.00 1.00 \ ATOM 18 CA LEU A 3 4.030 16.199 -65.497 1.00 1.00 \ ATOM 19 C LEU A 3 2.694 15.606 -65.021 1.00 1.00 \ ATOM 20 O LEU A 3 2.498 14.383 -65.032 1.00 1.00 \ ATOM 21 CB LEU A 3 4.781 16.742 -64.284 1.00 1.00 \ ATOM 22 CG LEU A 3 5.770 15.813 -63.580 1.00 1.00 \ ATOM 23 CD1 LEU A 3 6.926 15.442 -64.527 1.00 1.00 \ ATOM 24 CD2 LEU A 3 6.295 16.516 -62.320 1.00 1.00 \ ATOM 25 N THR A 4 1.790 16.472 -64.568 1.00 -0.41 \ ATOM 26 CA THR A 4 0.476 16.032 -64.089 1.00 -0.41 \ ATOM 27 C THR A 4 -0.290 15.361 -65.219 1.00 -0.41 \ ATOM 28 O THR A 4 -0.912 14.313 -65.043 1.00 -0.41 \ ATOM 29 CB THR A 4 -0.392 17.210 -63.596 1.00 -0.41 \ ATOM 30 OG1 THR A 4 0.432 18.150 -62.913 1.00 -0.41 \ ATOM 31 CG2 THR A 4 -1.533 16.724 -62.666 1.00 -0.41 \ ATOM 32 N GLU A 5 -0.254 15.990 -66.385 1.00 1.00 \ ATOM 33 CA GLU A 5 -1.025 15.526 -67.526 1.00 1.00 \ ATOM 34 C GLU A 5 -0.449 14.225 -68.102 1.00 1.00 \ ATOM 35 O GLU A 5 -1.194 13.289 -68.388 1.00 1.00 \ ATOM 36 CB GLU A 5 -1.078 16.611 -68.604 1.00 1.00 \ ATOM 37 CG GLU A 5 -2.052 16.315 -69.750 1.00 1.00 \ ATOM 38 CD GLU A 5 -1.347 15.791 -71.005 1.00 1.00 \ ATOM 39 OE1 GLU A 5 -0.103 15.750 -71.024 1.00 1.00 \ ATOM 40 OE2 GLU A 5 -2.035 15.429 -71.981 1.00 1.00 \ ATOM 41 N LEU A 6 0.872 14.170 -68.274 1.00 1.25 \ ATOM 42 CA LEU A 6 1.528 13.014 -68.897 1.00 1.25 \ ATOM 43 C LEU A 6 1.421 11.744 -68.038 1.00 1.25 \ ATOM 44 O LEU A 6 1.309 10.640 -68.570 1.00 1.25 \ ATOM 45 CB LEU A 6 3.006 13.313 -69.230 1.00 1.25 \ ATOM 46 CG LEU A 6 3.972 13.834 -68.147 1.00 1.25 \ ATOM 47 CD1 LEU A 6 4.304 12.790 -67.060 1.00 1.25 \ ATOM 48 CD2 LEU A 6 5.283 14.332 -68.822 1.00 1.25 \ ATOM 49 N LYS A 7 1.465 11.886 -66.716 1.00 0.49 \ ATOM 50 CA LYS A 7 1.309 10.725 -65.842 1.00 0.49 \ ATOM 51 C LYS A 7 -0.158 10.313 -65.779 1.00 0.49 \ ATOM 52 O LYS A 7 -0.488 9.212 -65.339 1.00 0.49 \ ATOM 53 CB LYS A 7 1.833 11.006 -64.433 1.00 0.49 \ ATOM 54 CG LYS A 7 3.348 10.776 -64.283 1.00 0.49 \ ATOM 55 CD LYS A 7 3.679 10.331 -62.853 1.00 0.49 \ ATOM 56 CE LYS A 7 3.149 11.374 -61.834 1.00 0.49 \ ATOM 57 NZ LYS A 7 3.243 10.841 -60.424 1.00 0.49 \ ATOM 58 N ASN A 8 -1.038 11.215 -66.207 1.00 -1.66 \ ATOM 59 CA ASN A 8 -2.472 10.947 -66.209 1.00 -1.66 \ ATOM 60 C ASN A 8 -2.984 10.583 -67.596 1.00 -1.66 \ ATOM 61 O ASN A 8 -4.000 9.907 -67.732 1.00 -1.66 \ ATOM 62 CB ASN A 8 -3.243 12.157 -65.676 1.00 -1.66 \ ATOM 63 CG ASN A 8 -3.041 12.357 -64.185 1.00 -1.66 \ ATOM 64 OD1 ASN A 8 -2.700 11.415 -63.471 1.00 -1.66 \ ATOM 65 ND2 ASN A 8 -3.236 13.584 -63.708 1.00 -1.66 \ ATOM 66 N THR A 9 -2.281 11.048 -68.622 1.00 -0.69 \ ATOM 67 CA THR A 9 -2.713 10.850 -70.001 1.00 -0.69 \ ATOM 68 C THR A 9 -2.743 9.344 -70.271 1.00 -0.69 \ ATOM 69 O THR A 9 -2.111 8.568 -69.546 1.00 -0.69 \ ATOM 70 CB THR A 9 -1.738 11.529 -71.007 1.00 -0.69 \ ATOM 71 OG1 THR A 9 -2.384 11.776 -72.262 1.00 -0.69 \ ATOM 72 CG2 THR A 9 -0.510 10.631 -71.250 1.00 -0.69 \ ATOM 73 N PRO A 10 -3.482 8.917 -71.310 1.00 -0.83 \ ATOM 74 CA PRO A 10 -3.426 7.497 -71.699 1.00 -0.83 \ ATOM 75 C PRO A 10 -2.008 7.123 -72.129 1.00 -0.83 \ ATOM 76 O PRO A 10 -1.321 7.961 -72.722 1.00 -0.83 \ ATOM 77 CB PRO A 10 -4.384 7.402 -72.898 1.00 -0.83 \ ATOM 78 CG PRO A 10 -5.325 8.618 -72.742 1.00 -0.83 \ ATOM 79 CD PRO A 10 -4.442 9.693 -72.118 1.00 -0.83 \ ATOM 80 N VAL A 11 -1.573 5.899 -71.843 1.00 -0.81 \ ATOM 81 CA VAL A 11 -0.280 5.437 -72.331 1.00 -0.81 \ ATOM 82 C VAL A 11 -0.310 5.378 -73.863 1.00 -0.81 \ ATOM 83 O VAL A 11 0.689 5.664 -74.528 1.00 -0.81 \ ATOM 84 CB VAL A 11 0.091 4.053 -71.761 1.00 -0.81 \ ATOM 85 CG1 VAL A 11 1.098 3.329 -72.687 1.00 -0.81 \ ATOM 86 CG2 VAL A 11 0.649 4.196 -70.335 1.00 -0.81 \ ATOM 87 N SER A 12 -1.459 4.999 -74.421 1.00 -1.68 \ ATOM 88 CA SER A 12 -1.626 4.939 -75.875 1.00 -1.68 \ ATOM 89 C SER A 12 -1.531 6.347 -76.475 1.00 -1.68 \ ATOM 90 O SER A 12 -0.781 6.602 -77.423 1.00 -1.68 \ ATOM 91 CB SER A 12 -2.969 4.280 -76.258 1.00 -1.68 \ ATOM 92 OG SER A 12 -4.096 5.040 -75.818 1.00 -1.68 \ ATOM 93 N ARG A 30 9.105 0.532 -68.817 1.00 1.08 \ ATOM 94 CA ARG A 30 7.796 0.671 -68.194 1.00 1.08 \ ATOM 95 C ARG A 30 7.171 2.004 -68.610 1.00 1.08 \ ATOM 96 O ARG A 30 7.821 2.844 -69.239 1.00 1.08 \ ATOM 97 CB ARG A 30 7.931 0.633 -66.670 1.00 1.08 \ ATOM 98 CG ARG A 30 8.556 1.919 -66.084 1.00 1.08 \ ATOM 99 CD ARG A 30 8.474 1.932 -64.551 1.00 1.08 \ ATOM 100 NE ARG A 30 9.263 0.851 -63.956 1.00 1.08 \ ATOM 101 CZ ARG A 30 9.104 0.392 -62.716 1.00 1.08 \ ATOM 102 NH1 ARG A 30 8.166 0.924 -61.934 1.00 1.08 \ ATOM 103 NH2 ARG A 30 9.878 -0.602 -62.263 1.00 1.08 \ ATOM 104 N LYS A 31 5.909 2.197 -68.239 1.00 2.07 \ ATOM 105 CA LYS A 31 5.204 3.441 -68.523 1.00 2.07 \ ATOM 106 C LYS A 31 5.958 4.634 -67.939 1.00 2.07 \ ATOM 107 O LYS A 31 6.173 5.624 -68.626 1.00 2.07 \ ATOM 108 CB LYS A 31 3.783 3.391 -67.958 1.00 2.07 \ ATOM 109 CG LYS A 31 3.718 3.263 -66.446 1.00 2.07 \ ATOM 110 CD LYS A 31 2.302 2.976 -65.976 1.00 2.07 \ ATOM 111 CE LYS A 31 1.375 4.147 -66.260 1.00 2.07 \ ATOM 112 NZ LYS A 31 1.677 5.323 -65.397 1.00 2.07 \ ATOM 113 N GLN A 32 6.362 4.534 -66.675 1.00 0.56 \ ATOM 114 CA GLN A 32 7.117 5.601 -66.018 1.00 0.56 \ ATOM 115 C GLN A 32 8.422 5.892 -66.762 1.00 0.56 \ ATOM 116 O GLN A 32 8.710 7.040 -67.099 1.00 0.56 \ ATOM 117 CB GLN A 32 7.442 5.217 -64.571 1.00 0.56 \ ATOM 118 CG GLN A 32 6.244 4.644 -63.791 1.00 0.56 \ ATOM 119 CD GLN A 32 5.370 5.740 -63.176 1.00 0.56 \ ATOM 120 OE1 GLN A 32 5.547 6.924 -63.474 1.00 0.56 \ ATOM 121 NE2 GLN A 32 4.432 5.349 -62.308 1.00 0.56 \ ATOM 122 N ASP A 33 9.219 4.848 -66.996 1.00 1.09 \ ATOM 123 CA ASP A 33 10.521 4.978 -67.667 1.00 1.09 \ ATOM 124 C ASP A 33 10.441 5.768 -68.971 1.00 1.09 \ ATOM 125 O ASP A 33 11.229 6.686 -69.194 1.00 1.09 \ ATOM 126 CB ASP A 33 11.117 3.599 -67.967 1.00 1.09 \ ATOM 127 CG ASP A 33 11.689 2.926 -66.734 1.00 1.09 \ ATOM 128 OD1 ASP A 33 11.912 3.631 -65.728 1.00 1.09 \ ATOM 129 OD2 ASP A 33 11.907 1.694 -66.758 1.00 1.09 \ ATOM 130 N ILE A 34 9.512 5.393 -69.848 1.00 -0.08 \ ATOM 131 CA ILE A 34 9.379 6.074 -71.134 1.00 -0.08 \ ATOM 132 C ILE A 34 8.908 7.517 -70.932 1.00 -0.08 \ ATOM 133 O ILE A 34 9.192 8.383 -71.753 1.00 -0.08 \ ATOM 134 CB ILE A 34 8.407 5.341 -72.085 1.00 -0.08 \ ATOM 135 CG1 ILE A 34 7.041 5.134 -71.407 1.00 -0.08 \ ATOM 136 CG2 ILE A 34 9.018 3.991 -72.538 1.00 -0.08 \ ATOM 137 CD1 ILE A 34 6.108 4.145 -72.174 1.00 -0.08 \ ATOM 138 N ILE A 35 8.182 7.775 -69.847 1.00 0.48 \ ATOM 139 CA ILE A 35 7.765 9.136 -69.532 1.00 0.48 \ ATOM 140 C ILE A 35 8.979 9.972 -69.126 1.00 0.48 \ ATOM 141 O ILE A 35 9.106 11.135 -69.507 1.00 0.48 \ ATOM 142 CB ILE A 35 6.750 9.185 -68.382 1.00 0.48 \ ATOM 143 CG1 ILE A 35 5.587 8.230 -68.637 1.00 0.48 \ ATOM 144 CG2 ILE A 35 6.201 10.610 -68.213 1.00 0.48 \ ATOM 145 CD1 ILE A 35 4.687 8.012 -67.386 1.00 0.48 \ ATOM 146 N PHE A 36 9.866 9.389 -68.327 1.00 2.07 \ ATOM 147 CA PHE A 36 11.084 10.083 -67.925 1.00 2.07 \ ATOM 148 C PHE A 36 11.961 10.318 -69.146 1.00 2.07 \ ATOM 149 O PHE A 36 12.649 11.334 -69.242 1.00 2.07 \ ATOM 150 CB PHE A 36 11.866 9.276 -66.891 1.00 2.07 \ ATOM 151 CG PHE A 36 11.097 9.009 -65.625 1.00 2.07 \ ATOM 152 CD1 PHE A 36 10.805 7.688 -65.236 1.00 2.07 \ ATOM 153 CD2 PHE A 36 10.636 10.081 -64.835 1.00 2.07 \ ATOM 154 CE1 PHE A 36 10.074 7.421 -64.053 1.00 2.07 \ ATOM 155 CE2 PHE A 36 9.901 9.849 -63.644 1.00 2.07 \ ATOM 156 CZ PHE A 36 9.617 8.507 -63.249 1.00 2.07 \ ATOM 157 N ALA A 37 11.944 9.362 -70.073 1.00 -0.71 \ ATOM 158 CA ALA A 37 12.745 9.458 -71.292 1.00 -0.71 \ ATOM 159 C ALA A 37 12.231 10.592 -72.180 1.00 -0.71 \ ATOM 160 O ALA A 37 13.013 11.373 -72.723 1.00 -0.71 \ ATOM 161 CB ALA A 37 12.727 8.133 -72.068 1.00 -0.71 \ ATOM 162 N ILE A 38 10.916 10.673 -72.353 1.00 -0.30 \ ATOM 163 CA ILE A 38 10.355 11.728 -73.182 1.00 -0.30 \ ATOM 164 C ILE A 38 10.591 13.052 -72.488 1.00 -0.30 \ ATOM 165 O ILE A 38 10.833 14.048 -73.163 1.00 -0.30 \ ATOM 166 CB ILE A 38 8.844 11.529 -73.492 1.00 -0.30 \ ATOM 167 CG1 ILE A 38 8.006 11.517 -72.204 1.00 -0.30 \ ATOM 168 CG2 ILE A 38 8.632 10.237 -74.288 1.00 -0.30 \ ATOM 169 CD1 ILE A 38 7.276 12.865 -71.905 1.00 -0.30 \ ATOM 170 N LEU A 39 10.554 13.067 -71.154 1.00 1.25 \ ATOM 171 CA LEU A 39 10.653 14.319 -70.400 1.00 1.25 \ ATOM 172 C LEU A 39 12.051 14.933 -70.510 1.00 1.25 \ ATOM 173 O LEU A 39 12.187 16.144 -70.694 1.00 1.25 \ ATOM 174 CB LEU A 39 10.290 14.118 -68.925 1.00 1.25 \ ATOM 175 CG LEU A 39 9.595 15.331 -68.282 1.00 1.25 \ ATOM 176 CD1 LEU A 39 8.407 15.815 -69.157 1.00 1.25 \ ATOM 177 CD2 LEU A 39 9.116 14.995 -66.855 1.00 1.25 \ ATOM 178 N LYS A 40 13.093 14.115 -70.377 1.00 0.56 \ ATOM 179 CA LYS A 40 14.457 14.625 -70.518 1.00 0.56 \ ATOM 180 C LYS A 40 14.628 15.235 -71.920 1.00 0.56 \ ATOM 181 O LYS A 40 15.370 16.201 -72.107 1.00 0.56 \ ATOM 182 CB LYS A 40 15.487 13.515 -70.304 1.00 0.56 \ ATOM 183 CG LYS A 40 15.177 12.240 -71.118 1.00 0.56 \ ATOM 184 CD LYS A 40 16.462 11.404 -71.366 1.00 0.56 \ ATOM 185 CE LYS A 40 17.231 11.169 -70.041 1.00 0.56 \ ATOM 186 NZ LYS A 40 16.406 10.355 -69.074 1.00 0.56 \ ATOM 187 N GLN A 41 13.940 14.667 -72.908 1.00 -0.98 \ ATOM 188 CA GLN A 41 13.944 15.218 -74.261 1.00 -0.98 \ ATOM 189 C GLN A 41 13.231 16.573 -74.249 1.00 -0.98 \ ATOM 190 O GLN A 41 13.694 17.558 -74.831 1.00 -0.98 \ ATOM 191 CB GLN A 41 13.234 14.261 -75.229 1.00 -0.98 \ ATOM 192 CG GLN A 41 12.827 14.901 -76.574 1.00 -0.98 \ ATOM 193 CD GLN A 41 14.031 15.170 -77.478 1.00 -0.98 \ ATOM 194 OE1 GLN A 41 15.172 14.895 -77.099 1.00 -0.98 \ ATOM 195 NE2 GLN A 41 13.782 15.703 -78.677 1.00 -0.98 \ ATOM 196 N HIS A 42 12.088 16.607 -73.568 1.00 -0.04 \ ATOM 197 CA HIS A 42 11.274 17.813 -73.476 1.00 -0.04 \ ATOM 198 C HIS A 42 12.085 19.013 -72.991 1.00 -0.04 \ ATOM 199 O HIS A 42 12.083 20.061 -73.626 1.00 -0.04 \ ATOM 200 CB HIS A 42 10.080 17.580 -72.543 1.00 -0.04 \ ATOM 201 CG HIS A 42 9.018 16.701 -73.129 1.00 -0.04 \ ATOM 202 ND1 HIS A 42 8.012 17.177 -73.939 1.00 -0.04 \ ATOM 203 CD2 HIS A 42 8.801 15.374 -73.016 1.00 -0.04 \ ATOM 204 CE1 HIS A 42 7.229 16.180 -74.304 1.00 -0.04 \ ATOM 205 NE2 HIS A 42 7.688 15.072 -73.760 1.00 -0.04 \ ATOM 206 N ALA A 43 12.777 18.858 -71.866 1.00 0.64 \ ATOM 207 CA ALA A 43 13.558 19.949 -71.286 1.00 0.64 \ ATOM 208 C ALA A 43 14.729 20.363 -72.184 1.00 0.64 \ ATOM 209 O ALA A 43 15.126 21.531 -72.199 1.00 0.64 \ ATOM 210 CB ALA A 43 14.085 19.554 -69.892 1.00 0.64 \ ATOM 211 N LYS A 44 15.309 19.407 -72.906 1.00 0.58 \ ATOM 212 CA LYS A 44 16.489 19.697 -73.717 1.00 0.58 \ ATOM 213 C LYS A 44 16.146 20.705 -74.827 1.00 0.58 \ ATOM 214 O LYS A 44 16.913 21.635 -75.095 1.00 0.58 \ ATOM 215 CB LYS A 44 17.068 18.421 -74.334 1.00 0.58 \ ATOM 216 CG LYS A 44 17.824 18.664 -75.671 1.00 0.58 \ ATOM 217 CD LYS A 44 17.922 17.355 -76.468 1.00 0.58 \ ATOM 218 CE LYS A 44 18.211 16.162 -75.520 1.00 0.58 \ ATOM 219 NZ LYS A 44 18.468 14.915 -76.317 1.00 0.58 \ ATOM 220 N SER A 45 14.997 20.517 -75.477 1.00 -1.00 \ ATOM 221 CA SER A 45 14.563 21.420 -76.544 1.00 -1.00 \ ATOM 222 C SER A 45 14.324 22.823 -75.977 1.00 -1.00 \ ATOM 223 O SER A 45 14.115 23.779 -76.728 1.00 -1.00 \ ATOM 224 CB SER A 45 13.278 20.914 -77.216 1.00 -1.00 \ ATOM 225 OG SER A 45 13.429 19.597 -77.724 1.00 -1.00 \ ATOM 226 N GLY A 46 14.331 22.940 -74.651 1.00 -1.00 \ ATOM 227 CA GLY A 46 14.077 24.209 -73.997 1.00 -1.00 \ ATOM 228 C GLY A 46 12.618 24.321 -73.582 1.00 -1.00 \ ATOM 229 O GLY A 46 12.226 25.275 -72.905 1.00 -1.00 \ ATOM 230 N GLU A 47 11.799 23.348 -73.983 1.00 -1.00 \ ATOM 231 CA GLU A 47 10.374 23.374 -73.637 1.00 -1.00 \ ATOM 232 C GLU A 47 10.218 23.125 -72.130 1.00 -1.00 \ ATOM 233 O GLU A 47 11.021 22.404 -71.523 1.00 -1.00 \ ATOM 234 CB GLU A 47 9.586 22.328 -74.429 1.00 -1.00 \ ATOM 235 CG GLU A 47 9.403 20.993 -73.685 1.00 -1.00 \ ATOM 236 CD GLU A 47 9.061 19.863 -74.636 1.00 -1.00 \ ATOM 237 OE1 GLU A 47 9.947 19.419 -75.400 1.00 -1.00 \ ATOM 238 OE2 GLU A 47 7.898 19.441 -74.653 1.00 -1.00 \ """, "e3iceA2_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e3iceA2_csv", state=0, origin=1) cmd.zoom("e3iceA2_csv", animate=-1)