cmd.read_pdbstr("""\ ATOM 1 N MET q 1 47.887 -84.434 85.876 1.00 -1.00 \ ATOM 2 CA MET q 1 48.907 -84.750 84.921 1.00 -1.00 \ ATOM 3 C MET q 1 50.050 -83.722 84.887 1.00 -1.00 \ ATOM 4 O MET q 1 50.071 -82.895 83.997 1.00 -1.00 \ ATOM 5 CB MET q 1 48.435 -85.039 83.426 1.00 -1.00 \ ATOM 6 CG MET q 1 47.382 -86.216 83.350 1.00 -1.00 \ ATOM 7 SD MET q 1 48.085 -87.744 84.115 1.00 -1.00 \ ATOM 8 CE MET q 1 49.703 -87.891 83.305 1.00 -1.00 \ ATOM 9 N ARG q 2 50.957 -83.745 85.929 1.00 0.39 \ ATOM 10 CA ARG q 2 51.978 -82.794 86.042 1.00 0.39 \ ATOM 11 C ARG q 2 53.317 -83.448 86.006 1.00 0.39 \ ATOM 12 O ARG q 2 53.501 -84.422 86.716 1.00 0.39 \ ATOM 13 CB ARG q 2 51.718 -81.997 87.284 1.00 0.39 \ ATOM 14 CG ARG q 2 51.991 -82.704 88.631 1.00 0.39 \ ATOM 15 CD ARG q 2 51.568 -81.755 89.792 1.00 0.39 \ ATOM 16 NE ARG q 2 50.196 -82.311 90.229 1.00 0.39 \ ATOM 17 CZ ARG q 2 49.852 -83.068 91.328 1.00 0.39 \ ATOM 18 NH1 ARG q 2 50.769 -83.133 92.316 1.00 0.39 \ ATOM 19 NH2 ARG q 2 48.713 -83.738 91.440 1.00 0.39 \ ATOM 20 N ALA q 3 54.231 -82.882 85.213 1.00 0.39 \ ATOM 21 CA ALA q 3 55.659 -83.147 85.324 1.00 0.39 \ ATOM 22 C ALA q 3 56.160 -82.347 86.447 1.00 0.39 \ ATOM 23 O ALA q 3 55.441 -81.691 87.111 1.00 0.39 \ ATOM 24 CB ALA q 3 56.383 -82.866 84.057 1.00 0.39 \ ATOM 25 N LYS q 4 57.486 -82.448 86.713 1.00 0.39 \ ATOM 26 CA LYS q 4 58.160 -81.841 87.843 1.00 0.39 \ ATOM 27 C LYS q 4 58.478 -80.397 87.355 1.00 0.39 \ ATOM 28 O LYS q 4 57.609 -79.574 87.323 1.00 0.39 \ ATOM 29 CB LYS q 4 59.435 -82.569 88.272 1.00 0.39 \ ATOM 30 CG LYS q 4 59.276 -84.027 88.571 1.00 0.39 \ ATOM 31 CD LYS q 4 60.548 -84.585 89.177 1.00 0.39 \ ATOM 32 CE LYS q 4 60.465 -86.071 89.388 1.00 0.39 \ ATOM 33 NZ LYS q 4 61.576 -86.529 90.323 1.00 0.39 \ ATOM 34 N TRP q 5 59.781 -80.116 87.071 1.00 0.39 \ ATOM 35 CA TRP q 5 60.472 -78.891 86.768 1.00 0.39 \ ATOM 36 C TRP q 5 59.954 -78.297 85.496 1.00 0.39 \ ATOM 37 O TRP q 5 59.977 -77.040 85.360 1.00 0.39 \ ATOM 38 CB TRP q 5 61.955 -79.020 86.860 1.00 0.39 \ ATOM 39 CG TRP q 5 62.470 -79.372 88.266 1.00 0.39 \ ATOM 40 CD1 TRP q 5 62.960 -80.571 88.719 1.00 0.39 \ ATOM 41 CD2 TRP q 5 62.366 -78.547 89.385 1.00 0.39 \ ATOM 42 NE1 TRP q 5 63.100 -80.610 90.110 1.00 0.39 \ ATOM 43 CE2 TRP q 5 62.773 -79.309 90.534 1.00 0.39 \ ATOM 44 CE3 TRP q 5 62.103 -77.179 89.507 1.00 0.39 \ ATOM 45 CZ2 TRP q 5 62.764 -78.764 91.836 1.00 0.39 \ ATOM 46 CZ3 TRP q 5 62.049 -76.646 90.798 1.00 0.39 \ ATOM 47 CH2 TRP q 5 62.398 -77.455 91.918 1.00 0.39 \ ATOM 48 N ARG q 6 59.631 -79.191 84.523 1.00 0.39 \ ATOM 49 CA ARG q 6 59.186 -78.820 83.193 1.00 0.39 \ ATOM 50 C ARG q 6 57.775 -78.084 83.130 1.00 0.39 \ ATOM 51 O ARG q 6 57.602 -76.991 82.646 1.00 0.39 \ ATOM 52 CB ARG q 6 58.981 -80.135 82.287 1.00 0.39 \ ATOM 53 CG ARG q 6 60.158 -81.123 82.261 1.00 0.39 \ ATOM 54 CD ARG q 6 60.110 -82.017 80.952 1.00 0.39 \ ATOM 55 NE ARG q 6 61.140 -83.119 81.071 1.00 0.39 \ ATOM 56 CZ ARG q 6 62.457 -82.996 81.222 1.00 0.39 \ ATOM 57 NH1 ARG q 6 63.116 -81.835 81.083 1.00 0.39 \ ATOM 58 NH2 ARG q 6 63.197 -84.082 81.467 1.00 0.39 \ ATOM 59 N LYS q 7 56.816 -78.696 83.932 1.00 0.39 \ ATOM 60 CA LYS q 7 55.449 -78.189 83.929 1.00 0.39 \ ATOM 61 C LYS q 7 55.296 -77.110 84.939 1.00 0.39 \ ATOM 62 O LYS q 7 54.287 -76.392 84.985 1.00 0.39 \ ATOM 63 CB LYS q 7 54.280 -79.235 84.011 1.00 0.39 \ ATOM 64 CG LYS q 7 53.984 -79.846 82.585 1.00 0.39 \ ATOM 65 CD LYS q 7 52.757 -80.745 82.525 1.00 0.39 \ ATOM 66 CE LYS q 7 52.663 -81.564 81.260 1.00 0.39 \ ATOM 67 NZ LYS q 7 51.248 -81.726 80.881 1.00 0.39 \ ATOM 68 N LYS q 8 56.314 -77.022 85.824 1.00 0.39 \ ATOM 69 CA LYS q 8 56.384 -75.952 86.839 1.00 0.39 \ ATOM 70 C LYS q 8 56.817 -74.728 86.135 1.00 0.39 \ ATOM 71 O LYS q 8 56.263 -73.662 86.449 1.00 0.39 \ ATOM 72 CB LYS q 8 57.452 -76.199 87.971 1.00 0.39 \ ATOM 73 CG LYS q 8 56.982 -77.092 89.026 1.00 0.39 \ ATOM 74 CD LYS q 8 58.205 -77.512 89.856 1.00 0.39 \ ATOM 75 CE LYS q 8 57.911 -78.711 90.821 1.00 0.39 \ ATOM 76 NZ LYS q 8 59.111 -79.219 91.477 1.00 0.39 \ ATOM 77 N ARG q 9 57.774 -74.758 85.190 1.00 0.39 \ ATOM 78 CA ARG q 9 58.156 -73.642 84.479 1.00 0.39 \ ATOM 79 C ARG q 9 56.959 -73.145 83.636 1.00 0.39 \ ATOM 80 O ARG q 9 56.644 -71.952 83.734 1.00 0.39 \ ATOM 81 CB ARG q 9 59.319 -74.142 83.559 1.00 0.39 \ ATOM 82 CG ARG q 9 60.688 -74.039 84.205 1.00 0.39 \ ATOM 83 CD ARG q 9 61.823 -74.404 83.243 1.00 0.39 \ ATOM 84 NE ARG q 9 63.086 -74.468 84.126 1.00 0.39 \ ATOM 85 CZ ARG q 9 63.656 -75.623 84.495 1.00 0.39 \ ATOM 86 NH1 ARG q 9 63.222 -76.760 83.924 1.00 0.39 \ ATOM 87 NH2 ARG q 9 64.603 -75.667 85.499 1.00 0.39 \ ATOM 88 N THR q 10 56.234 -74.057 82.983 1.00 -2.46 \ ATOM 89 CA THR q 10 55.195 -73.683 82.111 1.00 -2.46 \ ATOM 90 C THR q 10 54.069 -73.049 82.765 1.00 -2.46 \ ATOM 91 O THR q 10 53.661 -72.031 82.212 1.00 -2.46 \ ATOM 92 CB THR q 10 54.620 -74.740 81.210 1.00 -2.46 \ ATOM 93 OG1 THR q 10 54.251 -75.901 81.985 1.00 -2.46 \ ATOM 94 CG2 THR q 10 55.641 -75.096 80.036 1.00 -2.46 \ ATOM 95 N ARG q 11 53.718 -73.555 83.909 1.00 0.39 \ ATOM 96 CA ARG q 11 52.725 -72.947 84.794 1.00 0.39 \ ATOM 97 C ARG q 11 53.206 -71.642 85.333 1.00 0.39 \ ATOM 98 O ARG q 11 52.326 -70.850 85.534 1.00 0.39 \ ATOM 99 CB ARG q 11 52.233 -73.830 85.984 1.00 0.39 \ ATOM 100 CG ARG q 11 53.165 -74.306 87.138 1.00 0.39 \ ATOM 101 CD ARG q 11 53.302 -73.399 88.311 1.00 0.39 \ ATOM 102 NE ARG q 11 54.275 -73.865 89.392 1.00 0.39 \ ATOM 103 CZ ARG q 11 54.061 -74.930 90.224 1.00 0.39 \ ATOM 104 NH1 ARG q 11 53.083 -75.859 90.009 1.00 0.39 \ ATOM 105 NH2 ARG q 11 54.906 -75.043 91.240 1.00 0.39 \ ATOM 106 N ARG q 12 54.453 -71.473 85.711 1.00 0.39 \ ATOM 107 CA ARG q 12 54.931 -70.211 86.156 1.00 0.39 \ ATOM 108 C ARG q 12 55.133 -69.137 85.143 1.00 0.39 \ ATOM 109 O ARG q 12 55.086 -68.010 85.498 1.00 0.39 \ ATOM 110 CB ARG q 12 56.234 -70.290 86.979 1.00 0.39 \ ATOM 111 CG ARG q 12 56.184 -71.016 88.296 1.00 0.39 \ ATOM 112 CD ARG q 12 57.602 -71.216 88.840 1.00 0.39 \ ATOM 113 NE ARG q 12 57.535 -72.281 89.913 1.00 0.39 \ ATOM 114 CZ ARG q 12 58.592 -73.123 90.136 1.00 0.39 \ ATOM 115 NH1 ARG q 12 59.603 -73.298 89.173 1.00 0.39 \ ATOM 116 NH2 ARG q 12 58.659 -73.911 91.274 1.00 0.39 \ ATOM 117 N LEU q 13 55.635 -69.542 83.933 1.00 0.39 \ ATOM 118 CA LEU q 13 55.998 -68.687 82.811 1.00 0.39 \ ATOM 119 C LEU q 13 54.840 -68.123 82.216 1.00 0.39 \ ATOM 120 O LEU q 13 54.893 -66.973 81.753 1.00 0.39 \ ATOM 121 CB LEU q 13 56.910 -69.418 81.735 1.00 0.39 \ ATOM 122 CG LEU q 13 58.322 -69.537 82.282 1.00 0.39 \ ATOM 123 CD1 LEU q 13 59.066 -70.464 81.361 1.00 0.39 \ ATOM 124 CD2 LEU q 13 59.103 -68.165 82.330 1.00 0.39 \ ATOM 125 N LYS q 14 53.829 -68.948 82.077 1.00 0.39 \ ATOM 126 CA LYS q 14 52.626 -68.600 81.390 1.00 0.39 \ ATOM 127 C LYS q 14 51.886 -67.731 82.454 1.00 0.39 \ ATOM 128 O LYS q 14 51.221 -66.789 82.031 1.00 0.39 \ ATOM 129 CB LYS q 14 51.913 -69.669 80.540 1.00 0.39 \ ATOM 130 CG LYS q 14 52.585 -70.140 79.293 1.00 0.39 \ ATOM 131 CD LYS q 14 51.904 -71.282 78.661 1.00 0.39 \ ATOM 132 CE LYS q 14 52.574 -71.620 77.325 1.00 0.39 \ ATOM 133 NZ LYS q 14 52.155 -72.843 76.570 1.00 0.39 \ ATOM 134 N ARG q 15 52.259 -67.835 83.814 1.00 0.39 \ ATOM 135 CA ARG q 15 51.521 -67.390 85.003 1.00 0.39 \ ATOM 136 C ARG q 15 51.699 -65.885 84.997 1.00 0.39 \ ATOM 137 O ARG q 15 50.789 -65.107 85.194 1.00 0.39 \ ATOM 138 CB ARG q 15 51.961 -67.865 86.438 1.00 0.39 \ ATOM 139 CG ARG q 15 51.073 -67.400 87.579 1.00 0.39 \ ATOM 140 CD ARG q 15 51.603 -67.583 89.009 1.00 0.39 \ ATOM 141 NE ARG q 15 52.451 -68.825 89.080 1.00 0.39 \ ATOM 142 CZ ARG q 15 52.601 -69.396 90.315 1.00 0.39 \ ATOM 143 NH1 ARG q 15 51.881 -68.906 91.417 1.00 0.39 \ ATOM 144 NH2 ARG q 15 53.402 -70.505 90.478 1.00 0.39 \ ATOM 145 N LYS q 16 52.916 -65.513 84.610 1.00 0.39 \ ATOM 146 CA LYS q 16 53.246 -64.198 84.225 1.00 0.39 \ ATOM 147 C LYS q 16 52.515 -63.638 82.974 1.00 0.39 \ ATOM 148 O LYS q 16 52.094 -62.503 83.065 1.00 0.39 \ ATOM 149 CB LYS q 16 54.756 -64.040 83.792 1.00 0.39 \ ATOM 150 CG LYS q 16 55.750 -64.520 84.890 1.00 0.39 \ ATOM 151 CD LYS q 16 57.095 -64.351 84.257 1.00 0.39 \ ATOM 152 CE LYS q 16 58.207 -64.777 85.208 1.00 0.39 \ ATOM 153 NZ LYS q 16 59.470 -64.877 84.529 1.00 0.39 \ ATOM 154 N ARG q 17 52.366 -64.271 81.779 1.00 0.39 \ ATOM 155 CA ARG q 17 51.664 -63.735 80.614 1.00 0.39 \ ATOM 156 C ARG q 17 50.133 -63.707 80.725 1.00 0.39 \ ATOM 157 O ARG q 17 49.530 -63.002 79.953 1.00 0.39 \ ATOM 158 CB ARG q 17 51.928 -64.609 79.392 1.00 0.39 \ ATOM 159 CG ARG q 17 53.395 -65.037 79.149 1.00 0.39 \ ATOM 160 CD ARG q 17 53.473 -66.148 78.051 1.00 0.39 \ ATOM 161 NE ARG q 17 54.760 -66.843 77.960 1.00 0.39 \ ATOM 162 CZ ARG q 17 54.899 -67.923 77.168 1.00 0.39 \ ATOM 163 NH1 ARG q 17 53.948 -68.356 76.257 1.00 0.39 \ ATOM 164 NH2 ARG q 17 56.141 -68.554 77.156 1.00 0.39 \ ATOM 165 N ARG q 18 49.546 -64.521 81.682 1.00 0.39 \ ATOM 166 CA ARG q 18 48.189 -64.451 81.982 1.00 0.39 \ ATOM 167 C ARG q 18 47.924 -63.196 82.706 1.00 0.39 \ ATOM 168 O ARG q 18 47.075 -62.440 82.286 1.00 0.39 \ ATOM 169 CB ARG q 18 48.035 -65.686 82.859 1.00 0.39 \ ATOM 170 CG ARG q 18 48.234 -66.899 82.037 1.00 0.39 \ ATOM 171 CD ARG q 18 48.682 -67.995 83.030 1.00 0.39 \ ATOM 172 NE ARG q 18 48.721 -69.318 82.351 1.00 0.39 \ ATOM 173 CZ ARG q 18 49.605 -70.365 82.580 1.00 0.39 \ ATOM 174 NH1 ARG q 18 50.484 -70.282 83.607 1.00 0.39 \ ATOM 175 NH2 ARG q 18 49.564 -71.478 81.829 1.00 0.39 \ ATOM 176 N LYS q 19 48.751 -62.896 83.665 1.00 0.39 \ ATOM 177 CA LYS q 19 48.691 -61.708 84.514 1.00 0.39 \ ATOM 178 C LYS q 19 48.909 -60.510 83.603 1.00 0.39 \ ATOM 179 O LYS q 19 48.525 -59.394 83.941 1.00 0.39 \ ATOM 180 CB LYS q 19 49.743 -61.713 85.665 1.00 0.39 \ ATOM 181 CG LYS q 19 49.319 -62.607 86.946 1.00 0.39 \ ATOM 182 CD LYS q 19 50.371 -62.722 88.050 1.00 0.39 \ ATOM 183 CE LYS q 19 49.938 -63.742 89.186 1.00 0.39 \ ATOM 184 NZ LYS q 19 51.079 -64.068 90.123 1.00 0.39 \ ATOM 185 N VAL q 20 49.708 -60.651 82.516 1.00 -2.46 \ ATOM 186 CA VAL q 20 50.123 -59.443 81.807 1.00 -2.46 \ ATOM 187 C VAL q 20 49.171 -59.303 80.699 1.00 -2.46 \ ATOM 188 O VAL q 20 49.291 -58.401 79.914 1.00 -2.46 \ ATOM 189 CB VAL q 20 51.601 -59.598 81.358 1.00 -2.46 \ ATOM 190 CG1 VAL q 20 52.257 -58.751 80.235 1.00 -2.46 \ ATOM 191 CG2 VAL q 20 52.472 -59.603 82.645 1.00 -2.46 \ ATOM 192 N ARG q 21 48.164 -60.174 80.657 1.00 0.39 \ ATOM 193 CA ARG q 21 47.118 -59.999 79.701 1.00 0.39 \ ATOM 194 C ARG q 21 45.895 -59.904 80.555 1.00 0.39 \ ATOM 195 O ARG q 21 44.779 -59.940 80.078 1.00 0.39 \ ATOM 196 CB ARG q 21 47.034 -61.365 79.057 1.00 0.39 \ ATOM 197 CG ARG q 21 48.055 -61.616 77.984 1.00 0.39 \ ATOM 198 CD ARG q 21 47.869 -60.821 76.813 1.00 0.39 \ ATOM 199 NE ARG q 21 46.434 -61.021 76.399 1.00 0.39 \ ATOM 200 CZ ARG q 21 45.953 -62.289 76.096 1.00 0.39 \ ATOM 201 NH1 ARG q 21 44.710 -62.714 76.392 1.00 0.39 \ ATOM 202 NH2 ARG q 21 46.847 -63.194 75.626 1.00 0.39 \ ATOM 203 N ALA q 22 46.066 -59.565 81.886 1.00 -2.46 \ ATOM 204 CA ALA q 22 44.960 -59.075 82.599 1.00 -2.46 \ ATOM 205 C ALA q 22 45.158 -57.695 83.175 1.00 -2.46 \ ATOM 206 O ALA q 22 44.480 -56.748 82.796 1.00 -2.46 \ ATOM 207 CB ALA q 22 44.886 -60.048 83.828 1.00 -2.46 \ ATOM 208 N ARG q 23 46.169 -57.574 84.064 1.00 0.39 \ ATOM 209 CA ARG q 23 46.552 -56.322 84.597 1.00 0.39 \ ATOM 210 C ARG q 23 47.211 -55.459 83.538 1.00 0.39 \ ATOM 211 O ARG q 23 46.966 -54.258 83.506 1.00 0.39 \ ATOM 212 CB ARG q 23 47.576 -56.444 85.735 1.00 0.39 \ ATOM 213 CG ARG q 23 47.067 -57.330 86.887 1.00 0.39 \ ATOM 214 CD ARG q 23 48.143 -57.502 87.941 1.00 0.39 \ ATOM 215 NE ARG q 23 47.797 -58.699 88.852 1.00 0.39 \ ATOM 216 CZ ARG q 23 48.723 -59.329 89.663 1.00 0.39 \ ATOM 217 NH1 ARG q 23 50.013 -58.941 89.705 1.00 0.39 \ ATOM 218 NH2 ARG q 23 48.312 -60.307 90.508 1.00 0.39 \ ATOM 219 N SER q 24 48.265 -56.010 82.858 1.00 -1.00 \ ATOM 220 CA SER q 24 49.530 -55.262 82.867 1.00 -1.00 \ ATOM 221 C SER q 24 49.698 -54.243 81.765 1.00 -1.00 \ ATOM 222 O SER q 24 50.701 -54.120 81.062 1.00 -1.00 \ ATOM 223 CB SER q 24 50.807 -56.021 83.322 1.00 -1.00 \ ATOM 224 OG SER q 24 51.694 -56.358 82.273 1.00 -1.00 \ ATOM 225 N LYS q 25 48.677 -53.387 81.747 1.00 -1.00 \ ATOM 226 CA LYS q 25 48.679 -51.986 81.628 1.00 -1.00 \ ATOM 227 C LYS q 25 49.535 -51.325 82.775 1.00 -1.00 \ ATOM 228 O LYS q 25 49.374 -50.060 82.918 1.00 -1.00 \ ATOM 229 CB LYS q 25 47.175 -51.506 81.710 1.00 -1.00 \ ATOM 230 CG LYS q 25 46.138 -52.225 80.844 1.00 -1.00 \ ATOM 231 CD LYS q 25 46.506 -52.194 79.375 1.00 -1.00 \ ATOM 232 CE LYS q 25 46.102 -53.525 78.733 1.00 -1.00 \ ATOM 233 NZ LYS q 25 46.362 -53.397 77.267 1.00 -1.00 \ ATOM 234 OXT LYS q 25 50.327 -51.990 83.458 1.00 -1.00 \ """, "e3izsq1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e3izsq1_csv", state=0, origin=1) cmd.zoom("e3izsq1_csv", animate=-1)