cmd.read_pdbstr("""\ ATOM 1 N MET n 1 -39.894 21.710 16.453 1.00 -1.00 \ ATOM 2 CA MET n 1 -38.851 21.049 17.276 1.00 -1.00 \ ATOM 3 C MET n 1 -38.263 22.039 18.290 1.00 -1.00 \ ATOM 4 O MET n 1 -37.544 22.984 17.922 1.00 -1.00 \ ATOM 5 CB MET n 1 -37.742 20.396 16.487 1.00 -1.00 \ ATOM 6 CG MET n 1 -38.207 19.236 15.566 1.00 -1.00 \ ATOM 7 SD MET n 1 -39.840 18.480 15.927 1.00 -1.00 \ ATOM 8 CE MET n 1 -39.933 17.368 14.494 1.00 -1.00 \ ATOM 9 N ARG n 2 -38.598 21.809 19.560 1.00 0.39 \ ATOM 10 CA ARG n 2 -38.110 22.476 20.787 1.00 0.39 \ ATOM 11 C ARG n 2 -36.728 23.116 20.737 1.00 0.39 \ ATOM 12 O ARG n 2 -35.829 22.464 20.202 1.00 0.39 \ ATOM 13 CB ARG n 2 -38.180 21.623 22.101 1.00 0.39 \ ATOM 14 CG ARG n 2 -39.179 20.413 22.089 1.00 0.39 \ ATOM 15 CD ARG n 2 -39.035 19.629 23.387 1.00 0.39 \ ATOM 16 NE ARG n 2 -39.575 18.264 23.155 1.00 0.39 \ ATOM 17 CZ ARG n 2 -39.418 17.309 24.095 1.00 0.39 \ ATOM 18 NH1 ARG n 2 -38.689 17.558 25.241 1.00 0.39 \ ATOM 19 NH2 ARG n 2 -39.989 16.076 23.913 1.00 0.39 \ ATOM 20 N ALA n 3 -36.556 24.340 21.265 1.00 0.39 \ ATOM 21 CA ALA n 3 -35.352 25.080 21.353 1.00 0.39 \ ATOM 22 C ALA n 3 -34.127 24.294 21.825 1.00 0.39 \ ATOM 23 O ALA n 3 -33.069 24.490 21.229 1.00 0.39 \ ATOM 24 CB ALA n 3 -35.428 26.360 22.231 1.00 0.39 \ ATOM 25 N LYS n 4 -34.191 23.414 22.875 1.00 0.39 \ ATOM 26 CA LYS n 4 -33.014 22.629 23.309 1.00 0.39 \ ATOM 27 C LYS n 4 -32.386 21.807 22.239 1.00 0.39 \ ATOM 28 O LYS n 4 -31.161 21.772 22.107 1.00 0.39 \ ATOM 29 CB LYS n 4 -33.325 21.716 24.479 1.00 0.39 \ ATOM 30 CG LYS n 4 -32.119 20.966 24.992 1.00 0.39 \ ATOM 31 CD LYS n 4 -32.409 19.971 26.145 1.00 0.39 \ ATOM 32 CE LYS n 4 -32.517 20.689 27.492 1.00 0.39 \ ATOM 33 NZ LYS n 4 -32.858 19.721 28.535 1.00 0.39 \ ATOM 34 N TRP n 5 -33.240 21.076 21.480 1.00 0.39 \ ATOM 35 CA TRP n 5 -32.805 20.097 20.502 1.00 0.39 \ ATOM 36 C TRP n 5 -32.372 20.749 19.246 1.00 0.39 \ ATOM 37 O TRP n 5 -31.484 20.222 18.575 1.00 0.39 \ ATOM 38 CB TRP n 5 -33.891 19.064 20.202 1.00 0.39 \ ATOM 39 CG TRP n 5 -34.576 18.541 21.451 1.00 0.39 \ ATOM 40 CD1 TRP n 5 -35.893 18.605 21.769 1.00 0.39 \ ATOM 41 CD2 TRP n 5 -33.970 17.865 22.554 1.00 0.39 \ ATOM 42 NE1 TRP n 5 -36.181 17.953 22.948 1.00 0.39 \ ATOM 43 CE2 TRP n 5 -35.030 17.507 23.467 1.00 0.39 \ ATOM 44 CE3 TRP n 5 -32.643 17.552 22.900 1.00 0.39 \ ATOM 45 CZ2 TRP n 5 -34.754 16.886 24.691 1.00 0.39 \ ATOM 46 CZ3 TRP n 5 -32.368 17.004 24.129 1.00 0.39 \ ATOM 47 CH2 TRP n 5 -33.418 16.634 25.007 1.00 0.39 \ ATOM 48 N ARG n 6 -32.958 21.914 18.909 1.00 0.39 \ ATOM 49 CA ARG n 6 -32.493 22.815 17.868 1.00 0.39 \ ATOM 50 C ARG n 6 -31.133 23.376 18.200 1.00 0.39 \ ATOM 51 O ARG n 6 -30.292 23.480 17.305 1.00 0.39 \ ATOM 52 CB ARG n 6 -33.485 23.977 17.573 1.00 0.39 \ ATOM 53 CG ARG n 6 -34.510 23.558 16.570 1.00 0.39 \ ATOM 54 CD ARG n 6 -35.440 24.708 16.071 1.00 0.39 \ ATOM 55 NE ARG n 6 -36.312 24.184 14.983 1.00 0.39 \ ATOM 56 CZ ARG n 6 -36.938 24.968 14.098 1.00 0.39 \ ATOM 57 NH1 ARG n 6 -36.703 26.309 14.000 1.00 0.39 \ ATOM 58 NH2 ARG n 6 -37.799 24.383 13.178 1.00 0.39 \ ATOM 59 N LYS n 7 -30.897 23.708 19.481 1.00 0.39 \ ATOM 60 CA LYS n 7 -29.642 24.280 20.009 1.00 0.39 \ ATOM 61 C LYS n 7 -28.516 23.257 19.950 1.00 0.39 \ ATOM 62 O LYS n 7 -27.413 23.540 19.547 1.00 0.39 \ ATOM 63 CB LYS n 7 -29.766 24.881 21.438 1.00 0.39 \ ATOM 64 CG LYS n 7 -30.304 26.326 21.427 1.00 0.39 \ ATOM 65 CD LYS n 7 -30.635 26.856 22.813 1.00 0.39 \ ATOM 66 CE LYS n 7 -31.201 28.265 22.843 1.00 0.39 \ ATOM 67 NZ LYS n 7 -31.461 28.767 24.180 1.00 0.39 \ ATOM 68 N LYS n 8 -28.853 21.972 20.257 1.00 0.39 \ ATOM 69 CA LYS n 8 -27.994 20.823 20.073 1.00 0.39 \ ATOM 70 C LYS n 8 -27.672 20.553 18.642 1.00 0.39 \ ATOM 71 O LYS n 8 -26.535 20.184 18.368 1.00 0.39 \ ATOM 72 CB LYS n 8 -28.541 19.552 20.726 1.00 0.39 \ ATOM 73 CG LYS n 8 -28.421 19.701 22.240 1.00 0.39 \ ATOM 74 CD LYS n 8 -28.759 18.446 23.052 1.00 0.39 \ ATOM 75 CE LYS n 8 -28.607 18.659 24.529 1.00 0.39 \ ATOM 76 NZ LYS n 8 -29.016 17.467 25.278 1.00 0.39 \ ATOM 77 N ARG n 9 -28.583 20.759 17.682 1.00 0.39 \ ATOM 78 CA ARG n 9 -28.283 20.592 16.307 1.00 0.39 \ ATOM 79 C ARG n 9 -27.274 21.582 15.892 1.00 0.39 \ ATOM 80 O ARG n 9 -26.342 21.206 15.179 1.00 0.39 \ ATOM 81 CB ARG n 9 -29.441 20.616 15.317 1.00 0.39 \ ATOM 82 CG ARG n 9 -30.281 19.305 15.387 1.00 0.39 \ ATOM 83 CD ARG n 9 -31.221 19.103 14.146 1.00 0.39 \ ATOM 84 NE ARG n 9 -32.206 20.214 14.073 1.00 0.39 \ ATOM 85 CZ ARG n 9 -33.504 20.123 14.502 1.00 0.39 \ ATOM 86 NH1 ARG n 9 -34.450 20.984 14.040 1.00 0.39 \ ATOM 87 NH2 ARG n 9 -33.887 19.165 15.396 1.00 0.39 \ ATOM 88 N MET n 10 -27.360 22.863 16.394 1.00 -2.46 \ ATOM 89 CA MET n 10 -26.401 23.890 16.021 1.00 -2.46 \ ATOM 90 C MET n 10 -25.092 23.695 16.706 1.00 -2.46 \ ATOM 91 O MET n 10 -24.077 23.940 16.078 1.00 -2.46 \ ATOM 92 CB MET n 10 -26.853 25.350 16.324 1.00 -2.46 \ ATOM 93 CG MET n 10 -28.167 25.744 15.602 1.00 -2.46 \ ATOM 94 SD MET n 10 -28.345 25.368 13.829 1.00 -2.46 \ ATOM 95 CE MET n 10 -27.103 26.453 13.061 1.00 -2.46 \ ATOM 96 N ARG n 11 -25.042 23.180 17.964 1.00 0.39 \ ATOM 97 CA ARG n 11 -23.849 22.865 18.685 1.00 0.39 \ ATOM 98 C ARG n 11 -23.094 21.751 18.004 1.00 0.39 \ ATOM 99 O ARG n 11 -21.883 21.775 17.940 1.00 0.39 \ ATOM 100 CB ARG n 11 -24.123 22.478 20.168 1.00 0.39 \ ATOM 101 CG ARG n 11 -24.166 23.722 21.072 1.00 0.39 \ ATOM 102 CD ARG n 11 -24.601 23.399 22.521 1.00 0.39 \ ATOM 103 NE ARG n 11 -26.083 23.214 22.658 1.00 0.39 \ ATOM 104 CZ ARG n 11 -26.722 22.602 23.664 1.00 0.39 \ ATOM 105 NH1 ARG n 11 -26.063 21.785 24.539 1.00 0.39 \ ATOM 106 NH2 ARG n 11 -28.071 22.807 23.781 1.00 0.39 \ ATOM 107 N ARG n 12 -23.833 20.707 17.462 1.00 0.39 \ ATOM 108 CA ARG n 12 -23.288 19.565 16.792 1.00 0.39 \ ATOM 109 C ARG n 12 -22.734 19.919 15.499 1.00 0.39 \ ATOM 110 O ARG n 12 -21.720 19.421 15.034 1.00 0.39 \ ATOM 111 CB ARG n 12 -24.294 18.410 16.676 1.00 0.39 \ ATOM 112 CG ARG n 12 -24.619 17.785 18.038 1.00 0.39 \ ATOM 113 CD ARG n 12 -25.832 16.891 18.013 1.00 0.39 \ ATOM 114 NE ARG n 12 -26.026 16.301 19.369 1.00 0.39 \ ATOM 115 CZ ARG n 12 -27.113 15.590 19.738 1.00 0.39 \ ATOM 116 NH1 ARG n 12 -28.038 15.177 18.804 1.00 0.39 \ ATOM 117 NH2 ARG n 12 -27.320 15.268 21.060 1.00 0.39 \ ATOM 118 N LEU n 13 -23.433 20.885 14.836 1.00 0.39 \ ATOM 119 CA LEU n 13 -23.063 21.405 13.555 1.00 0.39 \ ATOM 120 C LEU n 13 -21.842 22.276 13.726 1.00 0.39 \ ATOM 121 O LEU n 13 -21.043 22.263 12.814 1.00 0.39 \ ATOM 122 CB LEU n 13 -24.143 22.275 12.850 1.00 0.39 \ ATOM 123 CG LEU n 13 -25.280 21.445 12.168 1.00 0.39 \ ATOM 124 CD1 LEU n 13 -26.514 22.359 11.853 1.00 0.39 \ ATOM 125 CD2 LEU n 13 -24.668 20.759 10.900 1.00 0.39 \ ATOM 126 N LYS n 14 -21.657 23.023 14.853 1.00 0.39 \ ATOM 127 CA LYS n 14 -20.493 23.865 15.127 1.00 0.39 \ ATOM 128 C LYS n 14 -19.254 23.027 15.236 1.00 0.39 \ ATOM 129 O LYS n 14 -18.247 23.384 14.640 1.00 0.39 \ ATOM 130 CB LYS n 14 -20.492 24.827 16.336 1.00 0.39 \ ATOM 131 CG LYS n 14 -21.546 25.970 16.246 1.00 0.39 \ ATOM 132 CD LYS n 14 -21.384 27.144 17.235 1.00 0.39 \ ATOM 133 CE LYS n 14 -21.759 26.716 18.682 1.00 0.39 \ ATOM 134 NZ LYS n 14 -21.412 27.747 19.695 1.00 0.39 \ ATOM 135 N ARG n 15 -19.289 21.821 15.873 1.00 0.39 \ ATOM 136 CA ARG n 15 -18.156 20.906 15.933 1.00 0.39 \ ATOM 137 C ARG n 15 -17.818 20.301 14.607 1.00 0.39 \ ATOM 138 O ARG n 15 -16.633 20.160 14.318 1.00 0.39 \ ATOM 139 CB ARG n 15 -18.185 19.848 17.033 1.00 0.39 \ ATOM 140 CG ARG n 15 -19.516 19.125 17.213 1.00 0.39 \ ATOM 141 CD ARG n 15 -19.493 18.247 18.498 1.00 0.39 \ ATOM 142 NE ARG n 15 -20.858 18.224 19.116 1.00 0.39 \ ATOM 143 CZ ARG n 15 -21.053 18.357 20.480 1.00 0.39 \ ATOM 144 NH1 ARG n 15 -20.050 18.328 21.337 1.00 0.39 \ ATOM 145 NH2 ARG n 15 -22.333 18.483 20.946 1.00 0.39 \ ATOM 146 N LYS n 16 -18.807 20.001 13.746 1.00 0.39 \ ATOM 147 CA LYS n 16 -18.611 19.592 12.391 1.00 0.39 \ ATOM 148 C LYS n 16 -17.876 20.603 11.545 1.00 0.39 \ ATOM 149 O LYS n 16 -16.942 20.249 10.858 1.00 0.39 \ ATOM 150 CB LYS n 16 -19.925 19.137 11.674 1.00 0.39 \ ATOM 151 CG LYS n 16 -20.485 17.826 12.222 1.00 0.39 \ ATOM 152 CD LYS n 16 -21.849 17.470 11.618 1.00 0.39 \ ATOM 153 CE LYS n 16 -22.455 16.192 12.151 1.00 0.39 \ ATOM 154 NZ LYS n 16 -23.747 15.988 11.468 1.00 0.39 \ ATOM 155 N ARG n 17 -18.315 21.888 11.683 1.00 0.39 \ ATOM 156 CA ARG n 17 -17.791 23.019 10.994 1.00 0.39 \ ATOM 157 C ARG n 17 -16.405 23.295 11.458 1.00 0.39 \ ATOM 158 O ARG n 17 -15.607 23.694 10.633 1.00 0.39 \ ATOM 159 CB ARG n 17 -18.655 24.297 11.220 1.00 0.39 \ ATOM 160 CG ARG n 17 -20.006 24.280 10.499 1.00 0.39 \ ATOM 161 CD ARG n 17 -21.022 25.245 11.083 1.00 0.39 \ ATOM 162 NE ARG n 17 -22.341 25.036 10.446 1.00 0.39 \ ATOM 163 CZ ARG n 17 -23.538 25.500 10.981 1.00 0.39 \ ATOM 164 NH1 ARG n 17 -23.546 26.125 12.183 1.00 0.39 \ ATOM 165 NH2 ARG n 17 -24.686 25.262 10.287 1.00 0.39 \ ATOM 166 N ARG n 18 -16.075 23.167 12.745 1.00 0.39 \ ATOM 167 CA ARG n 18 -14.797 23.437 13.332 1.00 0.39 \ ATOM 168 C ARG n 18 -13.794 22.478 12.816 1.00 0.39 \ ATOM 169 O ARG n 18 -12.683 22.873 12.467 1.00 0.39 \ ATOM 170 CB ARG n 18 -14.810 23.318 14.896 1.00 0.39 \ ATOM 171 CG ARG n 18 -15.374 24.562 15.577 1.00 0.39 \ ATOM 172 CD ARG n 18 -15.357 24.368 17.074 1.00 0.39 \ ATOM 173 NE ARG n 18 -15.926 25.653 17.691 1.00 0.39 \ ATOM 174 CZ ARG n 18 -17.133 25.769 18.327 1.00 0.39 \ ATOM 175 NH1 ARG n 18 -17.915 24.679 18.548 1.00 0.39 \ ATOM 176 NH2 ARG n 18 -17.541 26.950 18.805 1.00 0.39 \ ATOM 177 N LYS n 19 -14.194 21.186 12.713 1.00 0.39 \ ATOM 178 CA LYS n 19 -13.384 20.124 12.145 1.00 0.39 \ ATOM 179 C LYS n 19 -13.058 20.425 10.732 1.00 0.39 \ ATOM 180 O LYS n 19 -11.924 20.212 10.357 1.00 0.39 \ ATOM 181 CB LYS n 19 -14.061 18.744 12.182 1.00 0.39 \ ATOM 182 CG LYS n 19 -14.081 18.161 13.591 1.00 0.39 \ ATOM 183 CD LYS n 19 -14.804 16.823 13.621 1.00 0.39 \ ATOM 184 CE LYS n 19 -14.780 16.176 15.028 1.00 0.39 \ ATOM 185 NZ LYS n 19 -15.450 14.845 15.033 1.00 0.39 \ ATOM 186 N MET n 20 -14.047 20.854 9.870 1.00 -2.46 \ ATOM 187 CA MET n 20 -13.809 21.174 8.488 1.00 -2.46 \ ATOM 188 C MET n 20 -12.792 22.283 8.344 1.00 -2.46 \ ATOM 189 O MET n 20 -11.864 22.206 7.517 1.00 -2.46 \ ATOM 190 CB MET n 20 -15.066 21.595 7.712 1.00 -2.46 \ ATOM 191 CG MET n 20 -16.177 20.558 7.570 1.00 -2.46 \ ATOM 192 SD MET n 20 -15.637 18.960 6.869 1.00 -2.46 \ ATOM 193 CE MET n 20 -14.950 19.424 5.252 1.00 -2.46 \ ATOM 194 N ARG n 21 -12.942 23.362 9.149 1.00 0.39 \ ATOM 195 CA ARG n 21 -12.056 24.503 9.114 1.00 0.39 \ ATOM 196 C ARG n 21 -10.656 24.110 9.533 1.00 0.39 \ ATOM 197 O ARG n 21 -9.664 24.638 8.992 1.00 0.39 \ ATOM 198 CB ARG n 21 -12.492 25.665 10.099 1.00 0.39 \ ATOM 199 CG ARG n 21 -13.799 26.377 9.750 1.00 0.39 \ ATOM 200 CD ARG n 21 -14.326 27.300 10.901 1.00 0.39 \ ATOM 201 NE ARG n 21 -15.831 27.523 10.763 1.00 0.39 \ ATOM 202 CZ ARG n 21 -16.729 27.501 11.777 1.00 0.39 \ ATOM 203 NH1 ARG n 21 -16.322 27.281 13.081 1.00 0.39 \ ATOM 204 NH2 ARG n 21 -18.052 27.667 11.515 1.00 0.39 \ ATOM 205 N ALA n 22 -10.525 23.176 10.505 1.00 -2.46 \ ATOM 206 CA ALA n 22 -9.290 22.683 11.037 1.00 -2.46 \ ATOM 207 C ALA n 22 -8.412 21.966 10.043 1.00 -2.46 \ ATOM 208 O ALA n 22 -7.194 22.065 10.168 1.00 -2.46 \ ATOM 209 CB ALA n 22 -9.565 21.787 12.249 1.00 -2.46 \ ATOM 210 N ARG n 23 -9.020 21.290 9.035 1.00 0.39 \ ATOM 211 CA ARG n 23 -8.312 20.643 7.952 1.00 0.39 \ ATOM 212 C ARG n 23 -7.488 21.610 7.122 1.00 0.39 \ ATOM 213 O ARG n 23 -6.331 21.349 6.790 1.00 0.39 \ ATOM 214 CB ARG n 23 -9.230 19.928 6.920 1.00 0.39 \ ATOM 215 CG ARG n 23 -10.348 19.006 7.426 1.00 0.39 \ ATOM 216 CD ARG n 23 -10.975 18.195 6.281 1.00 0.39 \ ATOM 217 NE ARG n 23 -11.976 17.264 6.821 1.00 0.39 \ ATOM 218 CZ ARG n 23 -12.655 16.409 5.986 1.00 0.39 \ ATOM 219 NH1 ARG n 23 -12.464 16.415 4.650 1.00 0.39 \ ATOM 220 NH2 ARG n 23 -13.538 15.514 6.499 1.00 0.39 \ ATOM 221 N SER n 24 -8.068 22.766 6.784 1.00 -1.00 \ ATOM 222 CA SER n 24 -7.592 23.769 5.870 1.00 -1.00 \ ATOM 223 C SER n 24 -6.674 24.760 6.524 1.00 -1.00 \ ATOM 224 O SER n 24 -5.998 25.491 5.775 1.00 -1.00 \ ATOM 225 CB SER n 24 -8.698 24.506 5.103 1.00 -1.00 \ ATOM 226 OG SER n 24 -9.621 25.118 6.029 1.00 -1.00 \ ATOM 227 N LYS n 25 -6.579 24.823 7.886 1.00 -1.00 \ ATOM 228 CA LYS n 25 -5.772 25.781 8.604 1.00 -1.00 \ ATOM 229 C LYS n 25 -4.368 26.094 8.110 1.00 -1.00 \ ATOM 230 O LYS n 25 -3.535 25.144 8.085 1.00 -1.00 \ ATOM 231 CB LYS n 25 -5.564 25.496 10.092 1.00 -1.00 \ ATOM 232 CG LYS n 25 -6.777 25.796 11.006 1.00 -1.00 \ ATOM 233 CD LYS n 25 -6.412 25.528 12.490 1.00 -1.00 \ ATOM 234 CE LYS n 25 -7.643 25.814 13.403 1.00 -1.00 \ ATOM 235 NZ LYS n 25 -7.287 25.721 14.818 1.00 -1.00 \ ATOM 236 OXT LYS n 25 -4.140 27.266 7.717 1.00 -1.00 \ """, "e3j39n1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e3j39n1_csv", state=0, origin=1) cmd.zoom("e3j39n1_csv", animate=-1)