cmd.read_pdbstr("""\ ATOM 1 N MET n 1 -37.964 23.565 19.562 1.00 -1.00 \ ATOM 2 CA MET n 1 -37.296 22.661 20.490 1.00 -1.00 \ ATOM 3 C MET n 1 -36.886 23.384 21.777 1.00 -1.00 \ ATOM 4 O MET n 1 -36.601 24.596 21.753 1.00 -1.00 \ ATOM 5 CB MET n 1 -36.071 22.026 19.830 1.00 -1.00 \ ATOM 6 CG MET n 1 -36.401 21.060 18.704 1.00 -1.00 \ ATOM 7 SD MET n 1 -34.930 20.401 17.898 1.00 -1.00 \ ATOM 8 CE MET n 1 -34.315 19.295 19.166 1.00 -1.00 \ ATOM 9 N ARG n 2 -36.766 22.627 22.866 1.00 0.39 \ ATOM 10 CA ARG n 2 -36.492 23.204 24.176 1.00 0.39 \ ATOM 11 C ARG n 2 -35.190 23.978 24.101 1.00 0.39 \ ATOM 12 O ARG n 2 -34.234 23.552 23.453 1.00 0.39 \ ATOM 13 CB ARG n 2 -36.397 22.109 25.238 1.00 0.39 \ ATOM 14 CG ARG n 2 -36.768 22.568 26.639 1.00 0.39 \ ATOM 15 CD ARG n 2 -35.949 21.841 27.693 1.00 0.39 \ ATOM 16 NE ARG n 2 -36.554 20.568 28.074 1.00 0.39 \ ATOM 17 CZ ARG n 2 -36.076 19.768 29.022 1.00 0.39 \ ATOM 18 NH1 ARG n 2 -36.692 18.628 29.302 1.00 0.39 \ ATOM 19 NH2 ARG n 2 -34.983 20.108 29.691 1.00 0.39 \ ATOM 20 N ALA n 3 -35.171 25.137 24.749 1.00 0.39 \ ATOM 21 CA ALA n 3 -34.185 26.158 24.451 1.00 0.39 \ ATOM 22 C ALA n 3 -32.825 25.654 24.885 1.00 0.39 \ ATOM 23 O ALA n 3 -31.806 25.905 24.221 1.00 0.39 \ ATOM 24 CB ALA n 3 -34.530 27.471 25.137 1.00 0.39 \ ATOM 25 N LYS n 4 -32.796 24.949 26.011 1.00 0.39 \ ATOM 26 CA LYS n 4 -31.553 24.389 26.527 1.00 0.39 \ ATOM 27 C LYS n 4 -30.876 23.555 25.448 1.00 0.39 \ ATOM 28 O LYS n 4 -29.687 23.719 25.173 1.00 0.39 \ ATOM 29 CB LYS n 4 -31.822 23.533 27.766 1.00 0.39 \ ATOM 30 CG LYS n 4 -30.575 23.180 28.560 1.00 0.39 \ ATOM 31 CD LYS n 4 -30.931 22.611 29.924 1.00 0.39 \ ATOM 32 CE LYS n 4 -31.496 21.205 29.805 1.00 0.39 \ ATOM 33 NZ LYS n 4 -31.957 20.679 31.120 1.00 0.39 \ ATOM 34 N TRP n 5 -31.648 22.663 24.838 1.00 0.39 \ ATOM 35 CA TRP n 5 -31.158 21.839 23.742 1.00 0.39 \ ATOM 36 C TRP n 5 -30.741 22.638 22.512 1.00 0.39 \ ATOM 37 O TRP n 5 -29.722 22.334 21.893 1.00 0.39 \ ATOM 38 CB TRP n 5 -32.208 20.795 23.352 1.00 0.39 \ ATOM 39 CG TRP n 5 -32.477 19.785 24.426 1.00 0.39 \ ATOM 40 CD1 TRP n 5 -33.539 18.933 24.503 1.00 0.39 \ ATOM 41 CD2 TRP n 5 -31.667 19.522 25.579 1.00 0.39 \ ATOM 42 NE1 TRP n 5 -33.442 18.156 25.631 1.00 0.39 \ ATOM 43 CE2 TRP n 5 -32.302 18.497 26.309 1.00 0.39 \ ATOM 44 CE3 TRP n 5 -30.468 20.053 26.064 1.00 0.39 \ ATOM 45 CZ2 TRP n 5 -31.778 17.994 27.497 1.00 0.39 \ ATOM 46 CZ3 TRP n 5 -29.949 19.551 27.244 1.00 0.39 \ ATOM 47 CH2 TRP n 5 -30.604 18.532 27.947 1.00 0.39 \ ATOM 48 N ARG n 6 -31.555 23.621 22.139 1.00 0.39 \ ATOM 49 CA ARG n 6 -31.264 24.454 20.980 1.00 0.39 \ ATOM 50 C ARG n 6 -29.933 25.147 21.208 1.00 0.39 \ ATOM 51 O ARG n 6 -29.187 25.427 20.269 1.00 0.39 \ ATOM 52 CB ARG n 6 -32.370 25.487 20.766 1.00 0.39 \ ATOM 53 CG ARG n 6 -33.480 25.431 21.803 1.00 0.39 \ ATOM 54 CD ARG n 6 -34.344 26.680 21.755 1.00 0.39 \ ATOM 55 NE ARG n 6 -34.010 27.533 20.618 1.00 0.39 \ ATOM 56 CZ ARG n 6 -33.377 28.698 20.718 1.00 0.39 \ ATOM 57 NH1 ARG n 6 -33.006 29.153 21.907 1.00 0.39 \ ATOM 58 NH2 ARG n 6 -33.114 29.408 19.630 1.00 0.39 \ ATOM 59 N LYS n 7 -29.645 25.414 22.476 1.00 0.39 \ ATOM 60 CA LYS n 7 -28.377 26.001 22.880 1.00 0.39 \ ATOM 61 C LYS n 7 -27.275 24.959 22.781 1.00 0.39 \ ATOM 62 O LYS n 7 -26.130 25.279 22.460 1.00 0.39 \ ATOM 63 CB LYS n 7 -28.465 26.541 24.308 1.00 0.39 \ ATOM 64 CG LYS n 7 -28.299 28.049 24.412 1.00 0.39 \ ATOM 65 CD LYS n 7 -29.083 28.610 25.587 1.00 0.39 \ ATOM 66 CE LYS n 7 -29.293 30.109 25.445 1.00 0.39 \ ATOM 67 NZ LYS n 7 -29.193 30.810 26.755 1.00 0.39 \ ATOM 68 N LYS n 8 -27.627 23.707 23.054 1.00 0.39 \ ATOM 69 CA LYS n 8 -26.666 22.616 22.942 1.00 0.39 \ ATOM 70 C LYS n 8 -26.389 22.319 21.471 1.00 0.39 \ ATOM 71 O LYS n 8 -25.275 21.949 21.100 1.00 0.39 \ ATOM 72 CB LYS n 8 -27.191 21.363 23.644 1.00 0.39 \ ATOM 73 CG LYS n 8 -26.368 20.938 24.849 1.00 0.39 \ ATOM 74 CD LYS n 8 -25.493 19.738 24.525 1.00 0.39 \ ATOM 75 CE LYS n 8 -25.936 18.506 25.296 1.00 0.39 \ ATOM 76 NZ LYS n 8 -25.040 18.222 26.451 1.00 0.39 \ ATOM 77 N ARG n 9 -27.413 22.490 20.641 1.00 0.39 \ ATOM 78 CA ARG n 9 -27.290 22.291 19.206 1.00 0.39 \ ATOM 79 C ARG n 9 -26.356 23.331 18.614 1.00 0.39 \ ATOM 80 O ARG n 9 -25.641 23.060 17.649 1.00 0.39 \ ATOM 81 CB ARG n 9 -28.661 22.369 18.533 1.00 0.39 \ ATOM 82 CG ARG n 9 -28.621 22.870 17.099 1.00 0.39 \ ATOM 83 CD ARG n 9 -28.856 21.738 16.112 1.00 0.39 \ ATOM 84 NE ARG n 9 -30.085 21.926 15.346 1.00 0.39 \ ATOM 85 CZ ARG n 9 -31.097 21.065 15.335 1.00 0.39 \ ATOM 86 NH1 ARG n 9 -31.030 19.950 16.051 1.00 0.39 \ ATOM 87 NH2 ARG n 9 -32.177 21.317 14.608 1.00 0.39 \ ATOM 88 N MET n 10 -26.361 24.525 19.198 1.00 -2.46 \ ATOM 89 CA MET n 10 -25.471 25.580 18.730 1.00 -2.46 \ ATOM 90 C MET n 10 -24.043 25.352 19.210 1.00 -2.46 \ ATOM 91 O MET n 10 -23.093 25.465 18.434 1.00 -2.46 \ ATOM 92 CB MET n 10 -25.971 26.948 19.197 1.00 -2.46 \ ATOM 93 CG MET n 10 -26.521 27.822 18.081 1.00 -2.46 \ ATOM 94 SD MET n 10 -26.205 27.138 16.443 1.00 -2.46 \ ATOM 95 CE MET n 10 -25.378 28.517 15.654 1.00 -2.46 \ ATOM 96 N ARG n 11 -23.896 25.032 20.491 1.00 0.39 \ ATOM 97 CA ARG n 11 -22.567 24.793 21.070 1.00 0.39 \ ATOM 98 C ARG n 11 -21.803 23.808 20.173 1.00 0.39 \ ATOM 99 O ARG n 11 -20.618 23.997 19.861 1.00 0.39 \ ATOM 100 CB ARG n 11 -22.678 24.251 22.497 1.00 0.39 \ ATOM 101 CG ARG n 11 -23.223 25.254 23.500 1.00 0.39 \ ATOM 102 CD ARG n 11 -23.289 24.732 24.926 1.00 0.39 \ ATOM 103 NE ARG n 11 -23.883 25.705 25.839 1.00 0.39 \ ATOM 104 CZ ARG n 11 -24.161 25.460 27.111 1.00 0.39 \ ATOM 105 NH1 ARG n 11 -23.896 24.269 27.633 1.00 0.39 \ ATOM 106 NH2 ARG n 11 -24.702 26.405 27.868 1.00 0.39 \ ATOM 107 N ARG n 12 -22.504 22.754 19.767 1.00 0.39 \ ATOM 108 CA ARG n 12 -21.927 21.721 18.920 1.00 0.39 \ ATOM 109 C ARG n 12 -21.693 22.230 17.503 1.00 0.39 \ ATOM 110 O ARG n 12 -20.698 21.878 16.869 1.00 0.39 \ ATOM 111 CB ARG n 12 -22.831 20.486 18.891 1.00 0.39 \ ATOM 112 CG ARG n 12 -22.326 19.327 19.735 1.00 0.39 \ ATOM 113 CD ARG n 12 -23.330 18.187 19.764 1.00 0.39 \ ATOM 114 NE ARG n 12 -23.333 17.493 21.049 1.00 0.39 \ ATOM 115 CZ ARG n 12 -24.069 16.419 21.317 1.00 0.39 \ ATOM 116 NH1 ARG n 12 -24.866 15.910 20.387 1.00 0.39 \ ATOM 117 NH2 ARG n 12 -24.008 15.853 22.514 1.00 0.39 \ ATOM 118 N LEU n 13 -22.608 23.057 17.006 1.00 0.39 \ ATOM 119 CA LEU n 13 -22.469 23.580 15.665 1.00 0.39 \ ATOM 120 C LEU n 13 -21.201 24.410 15.620 1.00 0.39 \ ATOM 121 O LEU n 13 -20.492 24.422 14.614 1.00 0.39 \ ATOM 122 CB LEU n 13 -23.678 24.438 15.293 1.00 0.39 \ ATOM 123 CG LEU n 13 -23.737 24.934 13.847 1.00 0.39 \ ATOM 124 CD1 LEU n 13 -23.196 26.351 13.742 1.00 0.39 \ ATOM 125 CD2 LEU n 13 -22.974 23.995 12.925 1.00 0.39 \ ATOM 126 N LYS n 14 -20.963 25.166 16.687 1.00 0.39 \ ATOM 127 CA LYS n 14 -19.851 26.107 16.730 1.00 0.39 \ ATOM 128 C LYS n 14 -18.527 25.365 16.774 1.00 0.39 \ ATOM 129 O LYS n 14 -17.578 25.718 16.073 1.00 0.39 \ ATOM 130 CB LYS n 14 -19.977 27.031 17.942 1.00 0.39 \ ATOM 131 CG LYS n 14 -21.084 28.066 17.822 1.00 0.39 \ ATOM 132 CD LYS n 14 -21.163 28.936 19.066 1.00 0.39 \ ATOM 133 CE LYS n 14 -20.820 30.383 18.750 1.00 0.39 \ ATOM 134 NZ LYS n 14 -20.267 31.094 19.936 1.00 0.39 \ ATOM 135 N ARG n 15 -18.473 24.332 17.604 1.00 0.39 \ ATOM 136 CA ARG n 15 -17.270 23.517 17.729 1.00 0.39 \ ATOM 137 C ARG n 15 -16.856 22.961 16.372 1.00 0.39 \ ATOM 138 O ARG n 15 -15.671 22.918 16.041 1.00 0.39 \ ATOM 139 CB ARG n 15 -17.497 22.375 18.720 1.00 0.39 \ ATOM 140 CG ARG n 15 -16.334 22.136 19.669 1.00 0.39 \ ATOM 141 CD ARG n 15 -15.701 20.774 19.434 1.00 0.39 \ ATOM 142 NE ARG n 15 -16.307 19.738 20.266 1.00 0.39 \ ATOM 143 CZ ARG n 15 -15.982 19.513 21.534 1.00 0.39 \ ATOM 144 NH1 ARG n 15 -15.052 20.253 22.124 1.00 0.39 \ ATOM 145 NH2 ARG n 15 -16.586 18.549 22.215 1.00 0.39 \ ATOM 146 N LYS n 16 -17.844 22.537 15.591 1.00 0.39 \ ATOM 147 CA LYS n 16 -17.598 22.003 14.259 1.00 0.39 \ ATOM 148 C LYS n 16 -16.950 23.047 13.355 1.00 0.39 \ ATOM 149 O LYS n 16 -15.920 22.785 12.735 1.00 0.39 \ ATOM 150 CB LYS n 16 -18.902 21.503 13.633 1.00 0.39 \ ATOM 151 CG LYS n 16 -18.711 20.724 12.342 1.00 0.39 \ ATOM 152 CD LYS n 16 -20.043 20.272 11.767 1.00 0.39 \ ATOM 153 CE LYS n 16 -19.848 19.430 10.517 1.00 0.39 \ ATOM 154 NZ LYS n 16 -18.493 19.616 9.927 1.00 0.39 \ ATOM 155 N ARG n 17 -17.554 24.230 13.281 1.00 0.39 \ ATOM 156 CA ARG n 17 -17.012 25.295 12.440 1.00 0.39 \ ATOM 157 C ARG n 17 -15.606 25.653 12.908 1.00 0.39 \ ATOM 158 O ARG n 17 -14.782 26.043 12.111 1.00 0.39 \ ATOM 159 CB ARG n 17 -17.917 26.528 12.470 1.00 0.39 \ ATOM 160 CG ARG n 17 -19.270 26.320 11.807 1.00 0.39 \ ATOM 161 CD ARG n 17 -20.151 27.560 11.794 1.00 0.39 \ ATOM 162 NE ARG n 17 -21.462 27.292 11.211 1.00 0.39 \ ATOM 163 CZ ARG n 17 -22.458 28.166 11.183 1.00 0.39 \ ATOM 164 NH1 ARG n 17 -22.295 29.376 11.704 1.00 0.39 \ ATOM 165 NH2 ARG n 17 -23.619 27.837 10.632 1.00 0.39 \ ATOM 166 N ARG n 18 -15.339 25.468 14.197 1.00 0.39 \ ATOM 167 CA ARG n 18 -13.998 25.667 14.733 1.00 0.39 \ ATOM 168 C ARG n 18 -13.033 24.643 14.138 1.00 0.39 \ ATOM 169 O ARG n 18 -11.925 24.986 13.725 1.00 0.39 \ ATOM 170 CB ARG n 18 -14.008 25.561 16.258 1.00 0.39 \ ATOM 171 CG ARG n 18 -14.003 26.902 16.974 1.00 0.39 \ ATOM 172 CD ARG n 18 -14.761 26.829 18.290 1.00 0.39 \ ATOM 173 NE ARG n 18 -15.602 28.003 18.503 1.00 0.39 \ ATOM 174 CZ ARG n 18 -15.184 29.127 19.076 1.00 0.39 \ ATOM 175 NH1 ARG n 18 -13.930 29.233 19.495 1.00 0.39 \ ATOM 176 NH2 ARG n 18 -16.019 30.146 19.229 1.00 0.39 \ ATOM 177 N LYS n 19 -13.464 23.385 14.098 1.00 0.39 \ ATOM 178 CA LYS n 19 -12.666 22.309 13.521 1.00 0.39 \ ATOM 179 C LYS n 19 -12.366 22.567 12.049 1.00 0.39 \ ATOM 180 O LYS n 19 -11.207 22.701 11.656 1.00 0.39 \ ATOM 181 CB LYS n 19 -13.380 20.966 13.685 1.00 0.39 \ ATOM 182 CG LYS n 19 -12.458 19.760 13.611 1.00 0.39 \ ATOM 183 CD LYS n 19 -11.326 19.868 14.620 1.00 0.39 \ ATOM 184 CE LYS n 19 -10.833 18.494 15.045 1.00 0.39 \ ATOM 185 NZ LYS n 19 -11.288 18.142 16.419 1.00 0.39 \ ATOM 186 N MET n 20 -13.417 22.635 11.239 1.00 -2.46 \ ATOM 187 CA MET n 20 -13.267 22.866 9.804 1.00 -2.46 \ ATOM 188 C MET n 20 -12.418 24.098 9.479 1.00 -2.46 \ ATOM 189 O MET n 20 -11.725 24.130 8.462 1.00 -2.46 \ ATOM 190 CB MET n 20 -14.640 22.988 9.138 1.00 -2.46 \ ATOM 191 CG MET n 20 -14.995 21.820 8.232 1.00 -2.46 \ ATOM 192 SD MET n 20 -16.405 22.171 7.164 1.00 -2.46 \ ATOM 193 CE MET n 20 -16.961 20.512 6.781 1.00 -2.46 \ ATOM 194 N ARG n 21 -12.479 25.107 10.342 1.00 0.39 \ ATOM 195 CA ARG n 21 -11.765 26.359 10.120 1.00 0.39 \ ATOM 196 C ARG n 21 -10.266 26.234 10.364 1.00 0.39 \ ATOM 197 O ARG n 21 -9.470 26.933 9.738 1.00 0.39 \ ATOM 198 CB ARG n 21 -12.347 27.467 11.001 1.00 0.39 \ ATOM 199 CG ARG n 21 -11.879 28.865 10.630 1.00 0.39 \ ATOM 200 CD ARG n 21 -11.414 28.926 9.184 1.00 0.39 \ ATOM 201 NE ARG n 21 -10.222 29.754 9.027 1.00 0.39 \ ATOM 202 CZ ARG n 21 -10.191 31.066 9.237 1.00 0.39 \ ATOM 203 NH1 ARG n 21 -11.289 31.705 9.615 1.00 0.39 \ ATOM 204 NH2 ARG n 21 -9.061 31.740 9.070 1.00 0.39 \ ATOM 205 N GLN n 22 -9.893 25.366 11.299 1.00 -2.46 \ ATOM 206 CA GLN n 22 -8.491 25.162 11.639 1.00 -2.46 \ ATOM 207 C GLN n 22 -7.803 24.357 10.548 1.00 -2.46 \ ATOM 208 O GLN n 22 -6.600 24.490 10.324 1.00 -2.46 \ ATOM 209 CB GLN n 22 -8.364 24.444 12.984 1.00 -2.46 \ ATOM 210 CG GLN n 22 -7.115 23.588 13.115 1.00 -2.46 \ ATOM 211 CD GLN n 22 -6.895 23.091 14.530 1.00 -2.46 \ ATOM 212 OE1 GLN n 22 -7.847 22.859 15.274 1.00 -2.46 \ ATOM 213 NE2 GLN n 22 -5.633 22.927 14.910 1.00 -2.46 \ ATOM 214 N ARG n 23 -8.581 23.522 9.869 1.00 0.39 \ ATOM 215 CA ARG n 23 -8.067 22.715 8.774 1.00 0.39 \ ATOM 216 C ARG n 23 -7.631 23.607 7.615 1.00 0.39 \ ATOM 217 O ARG n 23 -7.383 23.121 6.512 1.00 0.39 \ ATOM 218 CB ARG n 23 -9.124 21.716 8.302 1.00 0.39 \ ATOM 219 CG ARG n 23 -9.597 20.756 9.381 1.00 0.39 \ ATOM 220 CD ARG n 23 -9.730 19.341 8.843 1.00 0.39 \ ATOM 221 NE ARG n 23 -9.640 19.299 7.386 1.00 0.39 \ ATOM 222 CZ ARG n 23 -9.512 18.182 6.677 1.00 0.39 \ ATOM 223 NH1 ARG n 23 -9.438 18.239 5.355 1.00 0.39 \ ATOM 224 NH2 ARG n 23 -9.457 17.008 7.291 1.00 0.39 \ ATOM 225 N SER n 24 -7.539 24.912 7.865 1.00 -1.00 \ ATOM 226 CA SER n 24 -7.146 25.830 6.833 1.00 -1.00 \ ATOM 227 C SER n 24 -6.299 26.987 7.355 1.00 -1.00 \ ATOM 228 O SER n 24 -6.055 27.944 6.631 1.00 -1.00 \ ATOM 229 CB SER n 24 -8.383 26.383 6.122 1.00 -1.00 \ ATOM 230 OG SER n 24 -9.174 27.160 7.006 1.00 -1.00 \ ATOM 231 N LYS n 25 -5.859 26.915 8.607 1.00 -1.00 \ ATOM 232 CA LYS n 25 -5.132 28.024 9.209 1.00 -1.00 \ ATOM 233 C LYS n 25 -3.879 28.403 8.446 1.00 -1.00 \ ATOM 234 O LYS n 25 -3.787 27.802 7.652 1.00 -1.00 \ ATOM 235 CB LYS n 25 -4.766 27.683 10.654 1.00 -1.00 \ ATOM 236 CG LYS n 25 -5.963 27.547 11.583 1.00 -1.00 \ ATOM 237 CD LYS n 25 -5.529 27.185 12.993 1.00 -1.00 \ ATOM 238 CE LYS n 25 -6.724 27.071 13.926 1.00 -1.00 \ ATOM 239 NZ LYS n 25 -6.315 26.694 15.307 1.00 -1.00 \ ATOM 240 OXT LYS n 25 -3.432 29.167 8.912 1.00 -1.00 \ """, "e3j3bn1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e3j3bn1_csv", state=0, origin=1) cmd.zoom("e3j3bn1_csv", animate=-1)