cmd.read_pdbstr("""\ ATOM 1 N GLN 2 333 117.662 116.044 154.214 1.00 -1.00 \ ATOM 2 CA GLN 2 333 117.246 117.011 155.219 1.00 -1.00 \ ATOM 3 C GLN 2 333 117.695 116.593 156.610 1.00 -1.00 \ ATOM 4 O GLN 2 333 117.859 115.410 156.869 1.00 -1.00 \ ATOM 5 CB GLN 2 333 115.733 117.152 155.177 1.00 -1.00 \ ATOM 6 CG GLN 2 333 115.220 118.184 156.095 1.00 -1.00 \ ATOM 7 CD GLN 2 333 115.867 119.501 155.802 1.00 -1.00 \ ATOM 8 OE1 GLN 2 333 116.618 120.036 156.616 1.00 -1.00 \ ATOM 9 NE2 GLN 2 333 115.594 120.033 154.620 1.00 -1.00 \ ATOM 10 N LEU 2 334 117.874 117.552 157.509 1.00 1.17 \ ATOM 11 CA LEU 2 334 118.372 117.269 158.855 1.00 1.17 \ ATOM 12 C LEU 2 334 117.464 116.381 159.709 1.00 1.17 \ ATOM 13 O LEU 2 334 117.950 115.436 160.319 1.00 1.17 \ ATOM 14 CB LEU 2 334 118.629 118.578 159.608 1.00 1.17 \ ATOM 15 CG LEU 2 334 119.971 119.301 159.431 1.00 1.17 \ ATOM 16 CD1 LEU 2 334 120.187 119.751 157.995 1.00 1.17 \ ATOM 17 CD2 LEU 2 334 120.079 120.488 160.390 1.00 1.17 \ ATOM 18 N LYS 2 335 116.166 116.689 159.760 1.00 -0.26 \ ATOM 19 CA LYS 2 335 115.214 116.009 160.660 1.00 -0.26 \ ATOM 20 C LYS 2 335 115.727 115.884 162.092 1.00 -0.26 \ ATOM 21 O LYS 2 335 116.136 116.864 162.708 1.00 -0.26 \ ATOM 22 CB LYS 2 335 114.862 114.608 160.149 1.00 -0.26 \ ATOM 23 CG LYS 2 335 114.187 114.557 158.795 1.00 -0.26 \ ATOM 24 CD LYS 2 335 112.775 115.097 158.817 1.00 -0.26 \ ATOM 25 CE LYS 2 335 112.159 114.981 157.441 1.00 -0.26 \ ATOM 26 NZ LYS 2 335 111.223 116.088 157.124 1.00 -0.26 \ ATOM 27 N TYR 2 336 115.713 114.655 162.598 1.00 -1.04 \ ATOM 28 CA TYR 2 336 116.126 114.355 163.964 1.00 -1.04 \ ATOM 29 C TYR 2 336 117.600 114.634 164.237 1.00 -1.04 \ ATOM 30 O TYR 2 336 118.453 114.457 163.367 1.00 -1.04 \ ATOM 31 CB TYR 2 336 115.818 112.896 164.282 1.00 -1.04 \ ATOM 32 CG TYR 2 336 114.353 112.574 164.169 1.00 -1.04 \ ATOM 33 CD1 TYR 2 336 113.399 113.405 164.743 1.00 -1.04 \ ATOM 34 CD2 TYR 2 336 113.918 111.453 163.475 1.00 -1.04 \ ATOM 35 CE1 TYR 2 336 112.051 113.119 164.643 1.00 -1.04 \ ATOM 36 CE2 TYR 2 336 112.571 111.159 163.366 1.00 -1.04 \ ATOM 37 CZ TYR 2 336 111.643 111.996 163.952 1.00 -1.04 \ ATOM 38 OH TYR 2 336 110.300 111.709 163.847 1.00 -1.04 \ ATOM 39 N VAL 2 337 117.876 115.065 165.466 1.00 0.52 \ ATOM 40 CA VAL 2 337 119.229 115.366 165.930 1.00 0.52 \ ATOM 41 C VAL 2 337 119.622 114.424 167.064 1.00 0.52 \ ATOM 42 O VAL 2 337 118.852 114.224 167.999 1.00 0.52 \ ATOM 43 CB VAL 2 337 119.344 116.831 166.429 1.00 0.52 \ ATOM 44 CG1 VAL 2 337 120.710 117.089 167.066 1.00 0.52 \ ATOM 45 CG2 VAL 2 337 119.074 117.811 165.294 1.00 0.52 \ ATOM 46 N LYS 2 338 120.811 113.838 166.989 1.00 -0.12 \ ATOM 47 CA LYS 2 338 121.286 112.979 168.070 1.00 -0.12 \ ATOM 48 C LYS 2 338 122.808 113.026 168.174 1.00 -0.12 \ ATOM 49 O LYS 2 338 123.501 113.201 167.173 1.00 -0.12 \ ATOM 50 CB LYS 2 338 120.798 111.537 167.864 1.00 -0.12 \ ATOM 51 CG LYS 2 338 121.230 110.540 168.936 1.00 -0.12 \ ATOM 52 CD LYS 2 338 120.968 109.106 168.491 1.00 -0.12 \ ATOM 53 CE LYS 2 338 119.497 108.871 168.187 1.00 -0.12 \ ATOM 54 NZ LYS 2 338 119.240 107.495 167.676 1.00 -0.12 \ ATOM 55 N PHE 2 339 123.320 112.889 169.394 1.00 0.32 \ ATOM 56 CA PHE 2 339 124.758 112.860 169.620 1.00 0.32 \ ATOM 57 C PHE 2 339 125.116 112.067 170.871 1.00 0.32 \ ATOM 58 O PHE 2 339 124.254 111.763 171.696 1.00 0.32 \ ATOM 59 CB PHE 2 339 125.338 114.279 169.700 1.00 0.32 \ ATOM 60 CG PHE 2 339 124.673 115.158 170.719 1.00 0.32 \ ATOM 61 CD1 PHE 2 339 125.194 115.273 171.997 1.00 0.32 \ ATOM 62 CD2 PHE 2 339 123.535 115.885 170.394 1.00 0.32 \ ATOM 63 CE1 PHE 2 339 124.588 116.086 172.940 1.00 0.32 \ ATOM 64 CE2 PHE 2 339 122.921 116.700 171.332 1.00 0.32 \ ATOM 65 CZ PHE 2 339 123.450 116.800 172.606 1.00 0.32 \ ATOM 66 N ASN 2 340 126.394 111.721 170.996 1.00 -0.10 \ ATOM 67 CA ASN 2 340 126.860 110.863 172.081 1.00 -0.10 \ ATOM 68 C ASN 2 340 126.803 111.509 173.478 1.00 -0.10 \ ATOM 69 O ASN 2 340 126.860 110.799 174.478 1.00 -0.10 \ ATOM 70 CB ASN 2 340 128.286 110.404 171.809 1.00 -0.10 \ ATOM 71 CG ASN 2 340 128.691 109.227 172.680 1.00 -0.10 \ ATOM 72 OD1 ASN 2 340 127.848 108.432 173.100 1.00 -0.10 \ ATOM 73 ND2 ASN 2 340 129.984 109.114 172.964 1.00 -0.10 \ ATOM 74 N CYS 2 341 126.682 112.839 173.542 1.00 1.66 \ ATOM 75 CA CYS 2 341 126.545 113.573 174.814 1.00 1.66 \ ATOM 76 C CYS 2 341 127.733 113.364 175.776 1.00 1.66 \ ATOM 77 O CYS 2 341 127.602 112.655 176.778 1.00 1.66 \ ATOM 78 CB CYS 2 341 125.245 113.184 175.517 1.00 1.66 \ ATOM 79 SG CYS 2 341 124.817 114.255 176.923 1.00 1.66 \ ATOM 80 N LEU 2 342 128.872 114.008 175.516 1.00 -0.43 \ ATOM 81 CA LEU 2 342 128.919 115.232 174.718 1.00 -0.43 \ ATOM 82 C LEU 2 342 130.274 115.424 174.024 1.00 -0.43 \ ATOM 83 O LEU 2 342 131.286 115.720 174.670 1.00 -0.43 \ ATOM 84 CB LEU 2 342 128.600 116.437 175.621 1.00 -0.43 \ ATOM 85 CG LEU 2 342 128.345 117.826 175.032 1.00 -0.43 \ ATOM 86 CD1 LEU 2 342 127.326 118.573 175.883 1.00 -0.43 \ ATOM 87 CD2 LEU 2 342 129.634 118.625 174.937 1.00 -0.43 \ ATOM 88 N LEU 2 348 122.784 117.676 175.745 1.00 0.94 \ ATOM 89 CA LEU 2 348 121.606 118.494 175.471 1.00 0.94 \ ATOM 90 C LEU 2 348 120.373 117.630 175.170 1.00 0.94 \ ATOM 91 O LEU 2 348 119.297 117.872 175.715 1.00 0.94 \ ATOM 92 CB LEU 2 348 121.873 119.457 174.303 1.00 0.94 \ ATOM 93 CG LEU 2 348 122.731 120.723 174.469 1.00 0.94 \ ATOM 94 CD1 LEU 2 348 124.194 120.394 174.726 1.00 0.94 \ ATOM 95 CD2 LEU 2 348 122.595 121.614 173.239 1.00 0.94 \ ATOM 96 N GLY 2 349 120.532 116.619 174.318 1.00 1.66 \ ATOM 97 CA GLY 2 349 119.433 115.729 173.955 1.00 1.66 \ ATOM 98 C GLY 2 349 118.918 115.944 172.540 1.00 1.66 \ ATOM 99 O GLY 2 349 119.291 116.924 171.892 1.00 1.66 \ ATOM 100 N PRO 2 350 118.071 115.021 172.046 1.00 1.66 \ ATOM 101 CA PRO 2 350 117.541 115.115 170.678 1.00 1.66 \ ATOM 102 C PRO 2 350 116.641 116.334 170.443 1.00 1.66 \ ATOM 103 O PRO 2 350 115.722 116.609 171.214 1.00 1.66 \ ATOM 104 CB PRO 2 350 116.749 113.811 170.514 1.00 1.66 \ ATOM 105 CG PRO 2 350 116.524 113.289 171.903 1.00 1.66 \ ATOM 106 CD PRO 2 350 117.701 113.754 172.705 1.00 1.66 \ ATOM 107 N PHE 2 351 116.916 117.051 169.358 1.00 0.50 \ ATOM 108 CA PHE 2 351 116.138 118.222 168.972 1.00 0.50 \ ATOM 109 C PHE 2 351 115.522 118.038 167.598 1.00 0.50 \ ATOM 110 O PHE 2 351 116.238 117.984 166.608 1.00 0.50 \ ATOM 111 CB PHE 2 351 117.010 119.483 168.931 1.00 0.50 \ ATOM 112 CG PHE 2 351 117.660 119.840 170.241 1.00 0.50 \ ATOM 113 CD1 PHE 2 351 116.997 119.636 171.438 1.00 0.50 \ ATOM 114 CD2 PHE 2 351 118.935 120.404 170.269 1.00 0.50 \ ATOM 115 CE1 PHE 2 351 117.590 119.974 172.639 1.00 0.50 \ ATOM 116 CE2 PHE 2 351 119.535 120.744 171.473 1.00 0.50 \ ATOM 117 CZ PHE 2 351 118.860 120.529 172.659 1.00 0.50 \ ATOM 118 N PHE 2 352 114.202 117.986 167.517 1.00 -1.37 \ ATOM 119 CA PHE 2 352 113.589 117.925 166.206 1.00 -1.37 \ ATOM 120 C PHE 2 352 113.578 119.303 165.562 1.00 -1.37 \ ATOM 121 O PHE 2 352 112.968 120.242 166.076 1.00 -1.37 \ ATOM 122 CB PHE 2 352 112.159 117.390 166.268 1.00 -1.37 \ ATOM 123 CG PHE 2 352 111.413 117.556 164.975 1.00 -1.37 \ ATOM 124 CD1 PHE 2 352 111.548 116.613 163.978 1.00 -1.37 \ ATOM 125 CD2 PHE 2 352 110.591 118.658 164.745 1.00 -1.37 \ ATOM 126 CE1 PHE 2 352 110.883 116.750 162.780 1.00 -1.37 \ ATOM 127 CE2 PHE 2 352 109.923 118.804 163.543 1.00 -1.37 \ ATOM 128 CZ PHE 2 352 110.069 117.846 162.561 1.00 -1.37 \ ATOM 129 N GLN 2 353 114.245 119.409 164.424 1.00 1.66 \ ATOM 130 CA GLN 2 353 114.023 120.528 163.544 1.00 1.66 \ ATOM 131 C GLN 2 353 114.176 120.080 162.098 1.00 1.66 \ ATOM 132 O GLN 2 353 115.127 119.374 161.773 1.00 1.66 \ ATOM 133 CB GLN 2 353 114.984 121.673 163.867 1.00 1.66 \ ATOM 134 N ASP 2 354 113.267 120.472 161.207 1.00 -0.79 \ ATOM 135 CA ASP 2 354 112.034 121.209 161.479 1.00 -0.79 \ ATOM 136 C ASP 2 354 111.241 121.115 160.192 1.00 -0.79 \ ATOM 137 O ASP 2 354 111.718 120.524 159.217 1.00 -0.79 \ ATOM 138 CB ASP 2 354 112.310 122.681 161.860 1.00 -0.79 \ ATOM 139 N SER 2 355 110.041 121.677 160.166 1.00 -1.22 \ ATOM 140 CA SER 2 355 109.454 121.978 158.869 1.00 -1.22 \ ATOM 141 C SER 2 355 108.796 123.353 158.844 1.00 -1.22 \ ATOM 142 O SER 2 355 107.781 123.551 159.497 1.00 -1.22 \ ATOM 143 CB SER 2 355 108.418 120.919 158.489 1.00 -1.22 \ ATOM 144 N ASN 2 356 109.379 124.314 158.133 1.00 -1.23 \ ATOM 145 CA ASN 2 356 110.818 124.349 157.903 1.00 -1.23 \ ATOM 146 C ASN 2 356 111.355 125.698 158.390 1.00 -1.23 \ ATOM 147 O ASN 2 356 111.096 126.738 157.774 1.00 -1.23 \ ATOM 148 CB ASN 2 356 111.148 124.130 156.430 1.00 -1.23 \ ATOM 149 N GLU 2 357 112.087 125.665 159.502 1.00 -1.12 \ ATOM 150 CA GLU 2 357 112.615 126.856 160.166 1.00 -1.12 \ ATOM 151 C GLU 2 357 114.087 126.665 160.527 1.00 -1.12 \ ATOM 152 O GLU 2 357 114.956 127.327 159.960 1.00 -1.12 \ ATOM 153 CB GLU 2 357 111.795 127.182 161.424 1.00 -1.12 \ ATOM 154 N GLU 2 358 114.335 125.739 161.458 1.00 0.55 \ ATOM 155 CA GLU 2 358 115.640 125.492 162.106 1.00 0.55 \ ATOM 156 C GLU 2 358 116.121 126.632 163.022 1.00 0.55 \ ATOM 157 O GLU 2 358 117.323 126.887 163.126 1.00 0.55 \ ATOM 158 CB GLU 2 358 116.729 125.184 161.066 1.00 0.55 \ ATOM 159 N ILE 2 359 115.179 127.282 163.701 1.00 0.20 \ ATOM 160 CA ILE 2 359 115.473 128.354 164.654 1.00 0.20 \ ATOM 161 C ILE 2 359 114.504 128.279 165.836 1.00 0.20 \ ATOM 162 O ILE 2 359 113.305 128.081 165.638 1.00 0.20 \ ATOM 163 CB ILE 2 359 115.369 129.753 163.996 1.00 0.20 \ ATOM 164 N ARG 2 360 115.009 128.433 167.061 1.00 -0.18 \ ATOM 165 CA ARG 2 360 116.432 128.637 167.324 1.00 -0.18 \ ATOM 166 C ARG 2 360 116.925 127.720 168.444 1.00 -0.18 \ ATOM 167 O ARG 2 360 117.066 128.139 169.593 1.00 -0.18 \ ATOM 168 CB ARG 2 360 116.708 130.099 167.683 1.00 -0.18 \ ATOM 169 N VAL 2 375 124.588 123.449 165.637 1.00 -0.16 \ ATOM 170 CA VAL 2 375 124.513 122.126 165.015 1.00 -0.16 \ ATOM 171 C VAL 2 375 125.541 121.186 165.647 1.00 -0.16 \ ATOM 172 O VAL 2 375 126.680 121.597 165.870 1.00 -0.16 \ ATOM 173 CB VAL 2 375 124.765 122.193 163.497 1.00 -0.16 \ ATOM 174 CG1 VAL 2 375 124.509 120.839 162.863 1.00 -0.16 \ ATOM 175 CG2 VAL 2 375 123.934 123.281 162.848 1.00 -0.16 \ ATOM 176 N ASN 2 376 125.154 119.950 165.976 1.00 1.21 \ ATOM 177 CA ASN 2 376 126.145 118.992 166.488 1.00 1.21 \ ATOM 178 C ASN 2 376 126.404 117.810 165.564 1.00 1.21 \ ATOM 179 O ASN 2 376 127.401 117.747 164.857 1.00 1.21 \ ATOM 180 CB ASN 2 376 125.722 118.399 167.836 1.00 1.21 \ ATOM 181 CG ASN 2 376 125.635 119.425 168.953 1.00 1.21 \ ATOM 182 OD1 ASN 2 376 124.647 119.468 169.687 1.00 1.21 \ ATOM 183 ND2 ASN 2 376 126.702 120.202 169.135 1.00 1.21 \ ATOM 184 N GLY 2 377 125.481 116.861 165.640 1.00 -0.86 \ ATOM 185 CA GLY 2 377 125.435 115.637 164.867 1.00 -0.86 \ ATOM 186 C GLY 2 377 126.342 114.578 165.458 1.00 -0.86 \ ATOM 187 O GLY 2 377 127.509 114.829 165.757 1.00 -0.86 \ ATOM 188 N GLU 2 378 125.817 113.371 165.565 1.00 -0.24 \ ATOM 189 CA GLU 2 378 126.641 112.183 165.716 1.00 -0.24 \ ATOM 190 C GLU 2 378 126.078 111.097 164.828 1.00 -0.24 \ ATOM 191 O GLU 2 378 126.630 110.770 163.775 1.00 -0.24 \ ATOM 192 CB GLU 2 378 126.679 111.723 167.177 1.00 -0.24 \ ATOM 193 CG GLU 2 378 127.490 110.444 167.470 1.00 -0.24 \ ATOM 194 CD GLU 2 378 128.971 110.720 167.788 1.00 -0.24 \ ATOM 195 OE1 GLU 2 378 129.476 111.789 167.386 1.00 -0.24 \ ATOM 196 OE2 GLU 2 378 129.634 109.876 168.442 1.00 -0.24 \ ATOM 197 N LYS 2 379 124.960 110.545 165.282 1.00 -0.84 \ ATOM 198 CA LYS 2 379 124.078 109.752 164.443 1.00 -0.84 \ ATOM 199 C LYS 2 379 122.743 110.465 164.400 1.00 -0.84 \ ATOM 200 O LYS 2 379 122.004 110.443 165.376 1.00 -0.84 \ ATOM 201 CB LYS 2 379 123.932 108.315 164.987 1.00 -0.84 \ ATOM 202 CG LYS 2 379 122.861 107.423 164.321 1.00 -0.84 \ ATOM 203 CD LYS 2 379 122.679 106.101 165.095 1.00 -0.84 \ ATOM 204 CE LYS 2 379 124.016 105.415 165.349 1.00 -0.84 \ ATOM 205 NZ LYS 2 379 124.630 104.925 164.080 1.00 -0.84 \ ATOM 206 N THR 2 380 122.436 111.090 163.268 1.00 0.80 \ ATOM 207 CA THR 2 380 121.178 111.811 163.114 1.00 0.80 \ ATOM 208 C THR 2 380 120.356 111.098 162.063 1.00 0.80 \ ATOM 209 O THR 2 380 120.895 110.584 161.083 1.00 0.80 \ ATOM 210 CB THR 2 380 121.386 113.298 162.707 1.00 0.80 \ ATOM 211 OG1 THR 2 380 122.267 113.377 161.578 1.00 0.80 \ ATOM 212 CG2 THR 2 380 121.973 114.085 163.856 1.00 0.80 \ ATOM 213 N VAL 2 381 119.050 111.055 162.241 1.00 0.84 \ ATOM 214 CA VAL 2 381 118.305 110.312 161.267 1.00 0.84 \ ATOM 215 C VAL 2 381 117.888 111.269 160.168 1.00 0.84 \ ATOM 216 O VAL 2 381 117.026 112.126 160.339 1.00 0.84 \ ATOM 217 CB VAL 2 381 117.106 109.611 161.895 1.00 0.84 \ ATOM 218 CG1 VAL 2 381 116.435 108.733 160.868 1.00 0.84 \ ATOM 219 CG2 VAL 2 381 117.569 108.768 163.067 1.00 0.84 \ ATOM 220 N TYR 2 382 118.540 111.106 159.029 1.00 -1.00 \ ATOM 221 CA TYR 2 382 118.261 111.907 157.860 1.00 -1.00 \ ATOM 222 C TYR 2 382 117.063 111.345 157.115 1.00 -1.00 \ ATOM 223 O TYR 2 382 116.763 110.152 157.187 1.00 -1.00 \ ATOM 224 CB TYR 2 382 119.496 111.976 156.957 1.00 -1.00 \ ATOM 225 CG TYR 2 382 120.608 112.869 157.489 1.00 -1.00 \ ATOM 226 CD1 TYR 2 382 120.334 114.137 157.984 1.00 -1.00 \ ATOM 227 CD2 TYR 2 382 121.927 112.441 157.503 1.00 -1.00 \ ATOM 228 CE1 TYR 2 382 121.346 114.962 158.468 1.00 -1.00 \ ATOM 229 CE2 TYR 2 382 122.944 113.255 157.985 1.00 -1.00 \ ATOM 230 CZ TYR 2 382 122.648 114.511 158.465 1.00 -1.00 \ ATOM 231 OH TYR 2 382 123.661 115.311 158.943 1.00 -1.00 \ ATOM 232 N ARG 2 383 116.356 112.231 156.439 1.00 -1.00 \ ATOM 233 CA ARG 2 383 115.255 111.831 155.599 1.00 -1.00 \ ATOM 234 C ARG 2 383 115.330 112.655 154.351 1.00 -1.00 \ ATOM 235 O ARG 2 383 115.529 113.855 154.417 1.00 -1.00 \ ATOM 236 CB ARG 2 383 113.921 112.036 156.307 1.00 -1.00 \ ATOM 237 CG ARG 2 383 112.689 111.850 155.412 1.00 -1.00 \ ATOM 238 CD ARG 2 383 111.391 111.865 156.212 1.00 -1.00 \ ATOM 239 NE ARG 2 383 111.406 110.889 157.300 1.00 -1.00 \ ATOM 240 CZ ARG 2 383 110.470 110.808 158.241 1.00 -1.00 \ ATOM 241 NH1 ARG 2 383 110.555 109.891 159.197 1.00 -1.00 \ ATOM 242 NH2 ARG 2 383 109.448 111.652 158.227 1.00 -1.00 \ """, "e3jc521_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e3jc521_csv", state=0, origin=1) cmd.zoom("e3jc521_csv", animate=-1)