cmd.read_pdbstr("""\ ATOM 1 N LEU A 7 57.335 -11.381 9.209 1.00 0.58 \ ATOM 2 CA LEU A 7 56.350 -12.267 8.454 1.00 0.58 \ ATOM 3 C LEU A 7 55.210 -11.447 7.936 1.00 0.58 \ ATOM 4 O LEU A 7 54.848 -10.467 8.565 1.00 0.58 \ ATOM 5 CB LEU A 7 55.801 -13.409 9.355 1.00 0.58 \ ATOM 6 CG LEU A 7 56.863 -14.372 9.879 1.00 0.58 \ ATOM 7 CD1 LEU A 7 56.301 -15.276 10.998 1.00 0.58 \ ATOM 8 CD2 LEU A 7 57.406 -15.200 8.718 1.00 0.58 \ ATOM 9 N PRO A 8 54.603 -11.839 6.798 1.00 0.41 \ ATOM 10 CA PRO A 8 53.514 -10.976 6.221 1.00 0.41 \ ATOM 11 C PRO A 8 52.222 -10.993 7.110 1.00 0.41 \ ATOM 12 O PRO A 8 52.126 -11.855 8.036 1.00 0.41 \ ATOM 13 CB PRO A 8 53.278 -11.627 4.847 1.00 0.41 \ ATOM 14 CG PRO A 8 54.640 -12.310 4.536 1.00 0.41 \ ATOM 15 CD PRO A 8 54.957 -12.958 5.905 1.00 0.41 \ ATOM 16 N PRO A 9 51.219 -10.086 6.858 1.00 -0.79 \ ATOM 17 CA PRO A 9 49.965 -10.046 7.721 1.00 -0.79 \ ATOM 18 C PRO A 9 49.270 -11.425 8.037 1.00 -0.79 \ ATOM 19 O PRO A 9 48.997 -12.243 7.123 1.00 -0.79 \ ATOM 20 CB PRO A 9 48.978 -9.178 6.872 1.00 -0.79 \ ATOM 21 CG PRO A 9 49.969 -8.229 6.101 1.00 -0.79 \ ATOM 22 CD PRO A 9 51.169 -9.089 5.768 1.00 -0.79 \ ATOM 23 N GLY A 10 48.975 -11.695 9.314 1.00 -0.48 \ ATOM 24 CA GLY A 10 48.240 -12.895 9.647 1.00 -0.48 \ ATOM 25 C GLY A 10 49.111 -14.061 10.034 1.00 -0.48 \ ATOM 26 O GLY A 10 48.659 -14.987 10.723 1.00 -0.48 \ ATOM 27 N TRP A 11 50.376 -14.013 9.606 1.00 2.12 \ ATOM 28 CA TRP A 11 51.271 -15.195 9.714 1.00 2.12 \ ATOM 29 C TRP A 11 51.989 -15.196 11.062 1.00 2.12 \ ATOM 30 O TRP A 11 52.508 -14.126 11.502 1.00 2.12 \ ATOM 31 CB TRP A 11 52.347 -15.159 8.610 1.00 2.12 \ ATOM 32 CG TRP A 11 51.842 -15.586 7.280 1.00 2.12 \ ATOM 33 CD1 TRP A 11 51.533 -14.776 6.222 1.00 2.12 \ ATOM 34 CD2 TRP A 11 51.619 -16.940 6.833 1.00 2.12 \ ATOM 35 NE1 TRP A 11 51.131 -15.539 5.135 1.00 2.12 \ ATOM 36 CE2 TRP A 11 51.169 -16.864 5.490 1.00 2.12 \ ATOM 37 CE3 TRP A 11 51.768 -18.231 7.442 1.00 2.12 \ ATOM 38 CZ2 TRP A 11 50.837 -18.020 4.735 1.00 2.12 \ ATOM 39 CZ3 TRP A 11 51.420 -19.372 6.709 1.00 2.12 \ ATOM 40 CH2 TRP A 11 50.991 -19.256 5.338 1.00 2.12 \ ATOM 41 N GLU A 12 52.072 -16.385 11.662 1.00 -0.42 \ ATOM 42 CA GLU A 12 52.805 -16.587 12.902 1.00 -0.42 \ ATOM 43 C GLU A 12 53.645 -17.860 12.761 1.00 -0.42 \ ATOM 44 O GLU A 12 53.256 -18.819 12.035 1.00 -0.42 \ ATOM 45 CB GLU A 12 51.813 -16.826 14.070 1.00 -0.42 \ ATOM 46 CG GLU A 12 50.685 -15.826 14.233 1.00 -0.42 \ ATOM 47 CD GLU A 12 51.107 -14.443 14.777 1.00 -0.42 \ ATOM 48 OE1 GLU A 12 50.317 -13.477 14.581 1.00 -0.42 \ ATOM 49 OE2 GLU A 12 52.214 -14.312 15.399 1.00 -0.42 \ ATOM 50 N LYS A 13 54.786 -17.878 13.461 1.00 -0.52 \ ATOM 51 CA LYS A 13 55.615 -19.048 13.597 1.00 -0.52 \ ATOM 52 C LYS A 13 55.081 -19.857 14.768 1.00 -0.52 \ ATOM 53 O LYS A 13 54.590 -19.301 15.756 1.00 -0.52 \ ATOM 54 CB LYS A 13 57.066 -18.603 13.837 1.00 -0.52 \ ATOM 55 CG LYS A 13 58.077 -19.723 13.702 1.00 -0.52 \ ATOM 56 CD LYS A 13 59.486 -19.154 13.944 1.00 -0.52 \ ATOM 57 CE LYS A 13 60.571 -20.104 13.435 1.00 -0.52 \ ATOM 58 NZ LYS A 13 61.976 -19.536 13.736 1.00 -0.52 \ ATOM 59 N ALA A 14 55.127 -21.173 14.666 1.00 -0.61 \ ATOM 60 CA ALA A 14 54.672 -22.024 15.726 1.00 -0.61 \ ATOM 61 C ALA A 14 55.507 -23.286 15.798 1.00 -0.61 \ ATOM 62 O ALA A 14 56.344 -23.618 14.918 1.00 -0.61 \ ATOM 63 CB ALA A 14 53.221 -22.375 15.530 1.00 -0.61 \ ATOM 64 N MET A 15 55.249 -24.027 16.849 1.00 -0.78 \ ATOM 65 CA MET A 15 55.993 -25.220 17.070 1.00 -0.78 \ ATOM 66 C MET A 15 55.126 -26.421 16.743 1.00 -0.78 \ ATOM 67 O MET A 15 54.025 -26.548 17.272 1.00 -0.78 \ ATOM 68 CB MET A 15 56.365 -25.265 18.553 1.00 -0.78 \ ATOM 69 CG MET A 15 56.919 -26.604 18.970 1.00 -0.78 \ ATOM 70 SD MET A 15 58.323 -26.963 17.937 1.00 -0.78 \ ATOM 71 CE MET A 15 59.611 -25.808 18.460 1.00 -0.78 \ ATOM 72 N SER A 16 55.604 -27.305 15.881 1.00 -0.03 \ ATOM 73 CA SER A 16 54.807 -28.490 15.614 1.00 -0.03 \ ATOM 74 C SER A 16 54.847 -29.503 16.811 1.00 -0.03 \ ATOM 75 O SER A 16 55.924 -29.795 17.313 1.00 -0.03 \ ATOM 76 CB SER A 16 55.350 -29.135 14.343 1.00 -0.03 \ ATOM 77 OG SER A 16 55.202 -30.524 14.411 1.00 -0.03 \ ATOM 78 N ARG A 17 53.711 -30.067 17.215 1.00 -0.74 \ ATOM 79 CA ARG A 17 53.658 -30.833 18.474 1.00 -0.74 \ ATOM 80 C ARG A 17 54.143 -32.246 18.187 1.00 -0.74 \ ATOM 81 O ARG A 17 54.708 -32.929 19.066 1.00 -0.74 \ ATOM 82 CB ARG A 17 52.253 -30.871 19.093 1.00 -0.74 \ ATOM 83 CG ARG A 17 51.212 -31.697 18.362 1.00 -0.74 \ ATOM 84 CD ARG A 17 49.912 -31.603 19.152 1.00 -0.74 \ ATOM 85 NE ARG A 17 49.749 -30.184 19.427 1.00 -0.74 \ ATOM 86 CZ ARG A 17 48.797 -29.588 20.138 1.00 -0.74 \ ATOM 87 NH1 ARG A 17 47.811 -30.270 20.734 1.00 -0.74 \ ATOM 88 NH2 ARG A 17 48.859 -28.255 20.220 1.00 -0.74 \ ATOM 89 N SER A 18 53.941 -32.656 16.936 1.00 -0.74 \ ATOM 90 CA SER A 18 54.385 -33.955 16.511 1.00 -0.74 \ ATOM 91 C SER A 18 55.917 -34.145 16.325 1.00 -0.74 \ ATOM 92 O SER A 18 56.490 -35.114 16.904 1.00 -0.74 \ ATOM 93 CB SER A 18 53.637 -34.359 15.255 1.00 -0.74 \ ATOM 94 OG SER A 18 53.596 -35.758 15.251 1.00 -0.74 \ ATOM 95 N SER A 19 56.565 -33.284 15.513 1.00 -1.00 \ ATOM 96 CA SER A 19 57.992 -33.449 15.192 1.00 -1.00 \ ATOM 97 C SER A 19 58.988 -32.566 15.984 1.00 -1.00 \ ATOM 98 O SER A 19 60.233 -32.757 15.951 1.00 -1.00 \ ATOM 99 CB SER A 19 58.187 -33.186 13.699 1.00 -1.00 \ ATOM 100 OG SER A 19 57.680 -31.901 13.376 1.00 -1.00 \ ATOM 101 N GLY A 20 58.462 -31.548 16.644 1.00 -0.06 \ ATOM 102 CA GLY A 20 59.353 -30.517 17.163 1.00 -0.06 \ ATOM 103 C GLY A 20 59.785 -29.526 16.072 1.00 -0.06 \ ATOM 104 O GLY A 20 60.574 -28.599 16.341 1.00 -0.06 \ ATOM 105 N ARG A 21 59.317 -29.698 14.828 1.00 -0.71 \ ATOM 106 CA ARG A 21 59.730 -28.715 13.774 1.00 -0.71 \ ATOM 107 C ARG A 21 58.861 -27.469 13.781 1.00 -0.71 \ ATOM 108 O ARG A 21 57.716 -27.532 14.104 1.00 -0.71 \ ATOM 109 CB ARG A 21 59.696 -29.356 12.378 1.00 -0.71 \ ATOM 110 CG ARG A 21 61.022 -29.906 11.930 1.00 -0.71 \ ATOM 111 CD ARG A 21 60.886 -30.228 10.428 1.00 -0.71 \ ATOM 112 NE ARG A 21 59.978 -31.354 10.257 1.00 -0.71 \ ATOM 113 CZ ARG A 21 59.063 -31.464 9.315 1.00 -0.71 \ ATOM 114 NH1 ARG A 21 58.876 -30.497 8.395 1.00 -0.71 \ ATOM 115 NH2 ARG A 21 58.317 -32.568 9.315 1.00 -0.71 \ ATOM 116 N VAL A 22 59.431 -26.334 13.437 1.00 -0.70 \ ATOM 117 CA VAL A 22 58.712 -25.086 13.313 1.00 -0.70 \ ATOM 118 C VAL A 22 57.739 -25.280 12.106 1.00 -0.70 \ ATOM 119 O VAL A 22 58.066 -25.974 11.149 1.00 -0.70 \ ATOM 120 CB VAL A 22 59.721 -23.979 13.023 1.00 -0.70 \ ATOM 121 CG1 VAL A 22 59.072 -22.740 12.367 1.00 -0.70 \ ATOM 122 CG2 VAL A 22 60.447 -23.579 14.373 1.00 -0.70 \ ATOM 123 N TYR A 23 56.571 -24.694 12.178 1.00 1.43 \ ATOM 124 CA TYR A 23 55.750 -24.496 10.986 1.00 1.43 \ ATOM 125 C TYR A 23 55.169 -23.040 11.067 1.00 1.43 \ ATOM 126 O TYR A 23 55.481 -22.247 12.020 1.00 1.43 \ ATOM 127 CB TYR A 23 54.665 -25.583 10.876 1.00 1.43 \ ATOM 128 CG TYR A 23 53.539 -25.430 11.872 1.00 1.43 \ ATOM 129 CD1 TYR A 23 52.336 -24.846 11.498 1.00 1.43 \ ATOM 130 CD2 TYR A 23 53.706 -25.821 13.221 1.00 1.43 \ ATOM 131 CE1 TYR A 23 51.283 -24.666 12.411 1.00 1.43 \ ATOM 132 CE2 TYR A 23 52.669 -25.644 14.152 1.00 1.43 \ ATOM 133 CZ TYR A 23 51.475 -25.073 13.757 1.00 1.43 \ ATOM 134 OH TYR A 23 50.437 -24.884 14.679 1.00 1.43 \ ATOM 135 N TYR A 24 54.380 -22.674 10.062 1.00 1.92 \ ATOM 136 CA TYR A 24 53.873 -21.314 9.959 1.00 1.92 \ ATOM 137 C TYR A 24 52.398 -21.431 9.712 1.00 1.92 \ ATOM 138 O TYR A 24 51.928 -22.286 8.940 1.00 1.92 \ ATOM 139 CB TYR A 24 54.582 -20.571 8.807 1.00 1.92 \ ATOM 140 CG TYR A 24 56.045 -20.377 9.082 1.00 1.92 \ ATOM 141 CD1 TYR A 24 56.977 -21.357 8.729 1.00 1.92 \ ATOM 142 CD2 TYR A 24 56.511 -19.195 9.697 1.00 1.92 \ ATOM 143 CE1 TYR A 24 58.341 -21.196 8.982 1.00 1.92 \ ATOM 144 CE2 TYR A 24 57.895 -19.002 9.975 1.00 1.92 \ ATOM 145 CZ TYR A 24 58.790 -19.991 9.603 1.00 1.92 \ ATOM 146 OH TYR A 24 60.135 -19.842 9.860 1.00 1.92 \ ATOM 147 N PHE A 25 51.613 -20.600 10.381 1.00 -0.07 \ ATOM 148 CA PHE A 25 50.179 -20.624 10.150 1.00 -0.07 \ ATOM 149 C PHE A 25 49.643 -19.186 10.147 1.00 -0.07 \ ATOM 150 O PHE A 25 50.279 -18.240 10.642 1.00 -0.07 \ ATOM 151 CB PHE A 25 49.460 -21.525 11.149 1.00 -0.07 \ ATOM 152 CG PHE A 25 49.206 -20.843 12.421 1.00 -0.07 \ ATOM 153 CD1 PHE A 25 50.245 -20.782 13.400 1.00 -0.07 \ ATOM 154 CD2 PHE A 25 47.971 -20.211 12.646 1.00 -0.07 \ ATOM 155 CE1 PHE A 25 50.042 -20.101 14.672 1.00 -0.07 \ ATOM 156 CE2 PHE A 25 47.752 -19.526 13.873 1.00 -0.07 \ ATOM 157 CZ PHE A 25 48.810 -19.439 14.876 1.00 -0.07 \ ATOM 158 N ASN A 26 48.544 -19.014 9.473 1.00 1.17 \ ATOM 159 CA ASN A 26 48.003 -17.688 9.247 1.00 1.17 \ ATOM 160 C ASN A 26 46.616 -17.679 9.844 1.00 1.17 \ ATOM 161 O ASN A 26 45.754 -18.452 9.403 1.00 1.17 \ ATOM 162 CB ASN A 26 47.969 -17.332 7.748 1.00 1.17 \ ATOM 163 CG ASN A 26 47.524 -15.889 7.515 1.00 1.17 \ ATOM 164 OD1 ASN A 26 46.450 -15.495 7.929 1.00 1.17 \ ATOM 165 ND2 ASN A 26 48.309 -15.157 6.783 1.00 1.17 \ ATOM 166 N HIS A 27 46.382 -16.828 10.865 1.00 -0.56 \ ATOM 167 CA HIS A 27 45.118 -16.871 11.586 1.00 -0.56 \ ATOM 168 C HIS A 27 44.004 -16.112 10.860 1.00 -0.56 \ ATOM 169 O HIS A 27 42.807 -16.171 11.290 1.00 -0.56 \ ATOM 170 CB HIS A 27 45.316 -16.349 13.052 1.00 -0.56 \ ATOM 171 CG HIS A 27 45.964 -14.983 13.142 1.00 -0.56 \ ATOM 172 ND1 HIS A 27 45.264 -13.807 12.941 1.00 -0.56 \ ATOM 173 CD2 HIS A 27 47.239 -14.621 13.427 1.00 -0.56 \ ATOM 174 CE1 HIS A 27 46.095 -12.784 13.065 1.00 -0.56 \ ATOM 175 NE2 HIS A 27 47.296 -13.253 13.358 1.00 -0.56 \ ATOM 176 N ILE A 28 44.351 -15.379 9.783 1.00 -0.85 \ ATOM 177 CA ILE A 28 43.286 -14.748 8.935 1.00 -0.85 \ ATOM 178 C ILE A 28 42.832 -15.705 7.794 1.00 -0.85 \ ATOM 179 O ILE A 28 41.627 -15.745 7.474 1.00 -0.85 \ ATOM 180 CB ILE A 28 43.789 -13.401 8.293 1.00 -0.85 \ ATOM 181 CG1 ILE A 28 44.292 -12.412 9.362 1.00 -0.85 \ ATOM 182 CG2 ILE A 28 42.738 -12.803 7.413 1.00 -0.85 \ ATOM 183 CD1 ILE A 28 45.290 -11.394 8.780 1.00 -0.85 \ """, "e3kadA2_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e3kadA2_csv", state=0, origin=1) cmd.zoom("e3kadA2_csv", animate=-1)