cmd.read_pdbstr("""\ ATOM 1 N LEU A 7 -15.585 3.859 35.980 1.00 0.58 \ ATOM 2 CA LEU A 7 -16.761 4.098 35.047 1.00 0.58 \ ATOM 3 C LEU A 7 -16.585 5.520 34.549 1.00 0.58 \ ATOM 4 O LEU A 7 -15.950 6.293 35.253 1.00 0.58 \ ATOM 5 CB LEU A 7 -18.082 4.014 35.822 1.00 0.58 \ ATOM 6 CG LEU A 7 -18.385 2.802 36.683 1.00 0.58 \ ATOM 7 CD1 LEU A 7 -19.406 3.112 37.781 1.00 0.58 \ ATOM 8 CD2 LEU A 7 -18.900 1.639 35.790 1.00 0.58 \ ATOM 9 N PRO A 8 -17.137 5.896 33.362 1.00 0.41 \ ATOM 10 CA PRO A 8 -17.050 7.335 32.917 1.00 0.41 \ ATOM 11 C PRO A 8 -17.768 8.384 33.816 1.00 0.41 \ ATOM 12 O PRO A 8 -18.563 8.021 34.740 1.00 0.41 \ ATOM 13 CB PRO A 8 -17.701 7.325 31.534 1.00 0.41 \ ATOM 14 CG PRO A 8 -17.711 5.933 31.135 1.00 0.41 \ ATOM 15 CD PRO A 8 -17.866 5.094 32.377 1.00 0.41 \ ATOM 16 N PRO A 9 -17.504 9.688 33.551 1.00 -0.79 \ ATOM 17 CA PRO A 9 -18.091 10.827 34.308 1.00 -0.79 \ ATOM 18 C PRO A 9 -19.607 10.704 34.582 1.00 -0.79 \ ATOM 19 O PRO A 9 -20.404 10.583 33.639 1.00 -0.79 \ ATOM 20 CB PRO A 9 -17.769 12.049 33.406 1.00 -0.79 \ ATOM 21 CG PRO A 9 -16.419 11.663 32.804 1.00 -0.79 \ ATOM 22 CD PRO A 9 -16.602 10.162 32.475 1.00 -0.79 \ ATOM 23 N GLY A 10 -20.007 10.761 35.862 1.00 -0.48 \ ATOM 24 CA GLY A 10 -21.434 10.764 36.187 1.00 -0.48 \ ATOM 25 C GLY A 10 -21.985 9.401 36.605 1.00 -0.48 \ ATOM 26 O GLY A 10 -22.985 9.344 37.352 1.00 -0.48 \ ATOM 27 N TRP A 11 -21.298 8.333 36.176 1.00 2.12 \ ATOM 28 CA TRP A 11 -21.818 6.937 36.317 1.00 2.12 \ ATOM 29 C TRP A 11 -21.605 6.328 37.698 1.00 2.12 \ ATOM 30 O TRP A 11 -20.487 6.306 38.220 1.00 2.12 \ ATOM 31 CB TRP A 11 -21.247 6.010 35.214 1.00 2.12 \ ATOM 32 CG TRP A 11 -21.833 6.237 33.865 1.00 2.12 \ ATOM 33 CD1 TRP A 11 -21.275 6.912 32.822 1.00 2.12 \ ATOM 34 CD2 TRP A 11 -23.120 5.790 33.414 1.00 2.12 \ ATOM 35 NE1 TRP A 11 -22.158 6.942 31.741 1.00 2.12 \ ATOM 36 CE2 TRP A 11 -23.275 6.221 32.083 1.00 2.12 \ ATOM 37 CE3 TRP A 11 -24.167 5.045 34.024 1.00 2.12 \ ATOM 38 CZ2 TRP A 11 -24.407 5.914 31.331 1.00 2.12 \ ATOM 39 CZ3 TRP A 11 -25.297 4.772 33.299 1.00 2.12 \ ATOM 40 CH2 TRP A 11 -25.425 5.217 31.951 1.00 2.12 \ ATOM 41 N GLU A 12 -22.679 5.814 38.296 1.00 -0.42 \ ATOM 42 CA GLU A 12 -22.546 5.050 39.551 1.00 -0.42 \ ATOM 43 C GLU A 12 -23.196 3.635 39.459 1.00 -0.42 \ ATOM 44 O GLU A 12 -24.169 3.432 38.735 1.00 -0.42 \ ATOM 45 CB GLU A 12 -23.142 5.833 40.733 1.00 -0.42 \ ATOM 46 CG GLU A 12 -22.271 7.040 41.202 1.00 -0.42 \ ATOM 47 CD GLU A 12 -20.856 6.607 41.770 1.00 -0.42 \ ATOM 48 OE1 GLU A 12 -20.754 5.658 42.623 1.00 -0.42 \ ATOM 49 OE2 GLU A 12 -19.845 7.250 41.369 1.00 -0.42 \ ATOM 50 N LYS A 13 -22.633 2.677 40.203 1.00 -0.52 \ ATOM 51 CA LYS A 13 -23.207 1.321 40.381 1.00 -0.52 \ ATOM 52 C LYS A 13 -24.288 1.382 41.431 1.00 -0.52 \ ATOM 53 O LYS A 13 -24.149 2.097 42.408 1.00 -0.52 \ ATOM 54 CB LYS A 13 -22.097 0.339 40.800 1.00 -0.52 \ ATOM 55 CG LYS A 13 -22.440 -1.110 40.532 1.00 -0.52 \ ATOM 56 CD LYS A 13 -21.171 -2.000 40.423 1.00 -0.52 \ ATOM 57 CE LYS A 13 -21.563 -3.400 39.924 1.00 -0.52 \ ATOM 58 NZ LYS A 13 -20.433 -4.278 39.491 1.00 -0.52 \ ATOM 59 N ALA A 14 -25.400 0.690 41.234 1.00 -0.61 \ ATOM 60 CA ALA A 14 -26.479 0.717 42.210 1.00 -0.61 \ ATOM 61 C ALA A 14 -27.098 -0.665 42.247 1.00 -0.61 \ ATOM 62 O ALA A 14 -26.854 -1.502 41.353 1.00 -0.61 \ ATOM 63 CB ALA A 14 -27.528 1.751 41.822 1.00 -0.61 \ ATOM 64 N MET A 15 -27.889 -0.900 43.275 1.00 -0.78 \ ATOM 65 CA MET A 15 -28.701 -2.111 43.344 1.00 -0.78 \ ATOM 66 C MET A 15 -30.160 -1.841 43.048 1.00 -0.78 \ ATOM 67 O MET A 15 -30.780 -0.937 43.627 1.00 -0.78 \ ATOM 68 CB MET A 15 -28.577 -2.810 44.701 1.00 -0.78 \ ATOM 69 CG MET A 15 -29.130 -4.274 44.686 1.00 -0.78 \ ATOM 70 SD MET A 15 -27.910 -5.272 45.567 1.00 -0.78 \ ATOM 71 CE MET A 15 -28.325 -4.859 47.295 1.00 -0.78 \ ATOM 72 N SER A 16 -30.701 -2.645 42.147 1.00 -0.03 \ ATOM 73 CA SER A 16 -32.097 -2.544 41.773 1.00 -0.03 \ ATOM 74 C SER A 16 -33.016 -3.036 42.925 1.00 -0.03 \ ATOM 75 O SER A 16 -32.747 -4.069 43.543 1.00 -0.03 \ ATOM 76 CB SER A 16 -32.330 -3.397 40.557 1.00 -0.03 \ ATOM 77 OG SER A 16 -33.718 -3.541 40.353 1.00 -0.03 \ ATOM 78 N ARG A 17 -34.098 -2.328 43.209 1.00 -0.74 \ ATOM 79 CA ARG A 17 -34.882 -2.775 44.350 1.00 -0.74 \ ATOM 80 C ARG A 17 -36.067 -3.722 44.071 1.00 -0.74 \ ATOM 81 O ARG A 17 -36.706 -4.228 45.014 1.00 -0.74 \ ATOM 82 CB ARG A 17 -35.216 -1.622 45.310 1.00 -0.74 \ ATOM 83 CG ARG A 17 -36.332 -0.746 44.914 1.00 -0.74 \ ATOM 84 CD ARG A 17 -36.525 0.252 46.049 1.00 -0.74 \ ATOM 85 NE ARG A 17 -35.274 0.971 46.280 1.00 -0.74 \ ATOM 86 CZ ARG A 17 -35.174 2.109 46.971 1.00 -0.74 \ ATOM 87 NH1 ARG A 17 -36.261 2.650 47.538 1.00 -0.74 \ ATOM 88 NH2 ARG A 17 -33.982 2.700 47.089 1.00 -0.74 \ ATOM 89 N SER A 18 -36.333 -3.998 42.791 1.00 -0.74 \ ATOM 90 CA SER A 18 -37.234 -5.096 42.411 1.00 -0.74 \ ATOM 91 C SER A 18 -36.493 -6.431 42.355 1.00 -0.74 \ ATOM 92 O SER A 18 -36.960 -7.437 42.952 1.00 -0.74 \ ATOM 93 CB SER A 18 -37.859 -4.832 41.042 1.00 -0.74 \ ATOM 94 OG SER A 18 -38.847 -3.828 41.113 1.00 -0.74 \ ATOM 95 N SER A 19 -35.349 -6.445 41.657 1.00 -1.00 \ ATOM 96 CA SER A 19 -34.726 -7.697 41.242 1.00 -1.00 \ ATOM 97 C SER A 19 -33.524 -8.057 42.103 1.00 -1.00 \ ATOM 98 O SER A 19 -33.169 -9.246 42.290 1.00 -1.00 \ ATOM 99 CB SER A 19 -34.369 -7.601 39.753 1.00 -1.00 \ ATOM 100 OG SER A 19 -33.401 -6.607 39.499 1.00 -1.00 \ ATOM 101 N GLY A 20 -32.923 -7.020 42.701 1.00 -0.06 \ ATOM 102 CA GLY A 20 -31.687 -7.193 43.430 1.00 -0.06 \ ATOM 103 C GLY A 20 -30.529 -7.259 42.442 1.00 -0.06 \ ATOM 104 O GLY A 20 -29.402 -7.493 42.826 1.00 -0.06 \ ATOM 105 N ARG A 21 -30.789 -7.061 41.155 1.00 -0.71 \ ATOM 106 CA ARG A 21 -29.675 -6.981 40.204 1.00 -0.71 \ ATOM 107 C ARG A 21 -28.933 -5.625 40.234 1.00 -0.71 \ ATOM 108 O ARG A 21 -29.550 -4.599 40.420 1.00 -0.71 \ ATOM 109 CB ARG A 21 -30.148 -7.311 38.770 1.00 -0.71 \ ATOM 110 CG ARG A 21 -29.744 -8.750 38.322 1.00 -0.71 \ ATOM 111 CD ARG A 21 -30.278 -9.080 36.924 1.00 -0.71 \ ATOM 112 NE ARG A 21 -31.703 -8.723 36.821 1.00 -0.71 \ ATOM 113 CZ ARG A 21 -32.218 -7.897 35.917 1.00 -0.71 \ ATOM 114 NH1 ARG A 21 -31.419 -7.296 35.004 1.00 -0.71 \ ATOM 115 NH2 ARG A 21 -33.532 -7.659 35.949 1.00 -0.71 \ ATOM 116 N VAL A 22 -27.612 -5.657 40.078 1.00 -0.70 \ ATOM 117 CA VAL A 22 -26.787 -4.460 39.886 1.00 -0.70 \ ATOM 118 C VAL A 22 -27.312 -3.713 38.609 1.00 -0.70 \ ATOM 119 O VAL A 22 -27.674 -4.356 37.604 1.00 -0.70 \ ATOM 120 CB VAL A 22 -25.321 -4.871 39.665 1.00 -0.70 \ ATOM 121 CG1 VAL A 22 -24.509 -3.708 39.179 1.00 -0.70 \ ATOM 122 CG2 VAL A 22 -24.697 -5.507 40.961 1.00 -0.70 \ ATOM 123 N TYR A 23 -27.370 -2.374 38.660 1.00 1.43 \ ATOM 124 CA TYR A 23 -27.552 -1.585 37.435 1.00 1.43 \ ATOM 125 C TYR A 23 -26.691 -0.333 37.549 1.00 1.43 \ ATOM 126 O TYR A 23 -25.993 -0.127 38.560 1.00 1.43 \ ATOM 127 CB TYR A 23 -29.003 -1.242 37.161 1.00 1.43 \ ATOM 128 CG TYR A 23 -29.554 -0.237 38.106 1.00 1.43 \ ATOM 129 CD1 TYR A 23 -29.697 1.088 37.725 1.00 1.43 \ ATOM 130 CD2 TYR A 23 -29.899 -0.603 39.413 1.00 1.43 \ ATOM 131 CE1 TYR A 23 -30.172 2.054 38.586 1.00 1.43 \ ATOM 132 CE2 TYR A 23 -30.403 0.333 40.291 1.00 1.43 \ ATOM 133 CZ TYR A 23 -30.546 1.665 39.875 1.00 1.43 \ ATOM 134 OH TYR A 23 -31.019 2.593 40.775 1.00 1.43 \ ATOM 135 N TYR A 24 -26.703 0.480 36.498 1.00 1.92 \ ATOM 136 CA TYR A 24 -25.853 1.650 36.487 1.00 1.92 \ ATOM 137 C TYR A 24 -26.696 2.875 36.255 1.00 1.92 \ ATOM 138 O TYR A 24 -27.649 2.844 35.479 1.00 1.92 \ ATOM 139 CB TYR A 24 -24.774 1.517 35.422 1.00 1.92 \ ATOM 140 CG TYR A 24 -23.843 0.384 35.723 1.00 1.92 \ ATOM 141 CD1 TYR A 24 -24.129 -0.917 35.243 1.00 1.92 \ ATOM 142 CD2 TYR A 24 -22.713 0.586 36.503 1.00 1.92 \ ATOM 143 CE1 TYR A 24 -23.289 -1.987 35.518 1.00 1.92 \ ATOM 144 CE2 TYR A 24 -21.838 -0.470 36.798 1.00 1.92 \ ATOM 145 CZ TYR A 24 -22.121 -1.742 36.281 1.00 1.92 \ ATOM 146 OH TYR A 24 -21.282 -2.784 36.590 1.00 1.92 \ ATOM 147 N PHE A 25 -26.358 3.963 36.950 1.00 -0.07 \ ATOM 148 CA PHE A 25 -27.068 5.185 36.726 1.00 -0.07 \ ATOM 149 C PHE A 25 -26.074 6.346 36.672 1.00 -0.07 \ ATOM 150 O PHE A 25 -24.921 6.280 37.187 1.00 -0.07 \ ATOM 151 CB PHE A 25 -28.168 5.415 37.752 1.00 -0.07 \ ATOM 152 CG PHE A 25 -27.681 6.010 38.984 1.00 -0.07 \ ATOM 153 CD1 PHE A 25 -27.097 5.173 39.985 1.00 -0.07 \ ATOM 154 CD2 PHE A 25 -27.788 7.408 39.194 1.00 -0.07 \ ATOM 155 CE1 PHE A 25 -26.615 5.734 41.221 1.00 -0.07 \ ATOM 156 CE2 PHE A 25 -27.303 8.005 40.405 1.00 -0.07 \ ATOM 157 CZ PHE A 25 -26.689 7.168 41.411 1.00 -0.07 \ ATOM 158 N ASN A 26 -26.539 7.383 36.014 1.00 1.17 \ ATOM 159 CA ASN A 26 -25.687 8.529 35.763 1.00 1.17 \ ATOM 160 C ASN A 26 -26.298 9.782 36.394 1.00 1.17 \ ATOM 161 O ASN A 26 -27.408 10.189 36.062 1.00 1.17 \ ATOM 162 CB ASN A 26 -25.353 8.692 34.258 1.00 1.17 \ ATOM 163 CG ASN A 26 -24.318 9.819 34.031 1.00 1.17 \ ATOM 164 OD1 ASN A 26 -24.545 10.934 34.428 1.00 1.17 \ ATOM 165 ND2 ASN A 26 -23.240 9.512 33.369 1.00 1.17 \ ATOM 166 N HIS A 27 -25.605 10.369 37.355 1.00 -0.56 \ ATOM 167 CA HIS A 27 -26.240 11.418 38.132 1.00 -0.56 \ ATOM 168 C HIS A 27 -26.179 12.775 37.399 1.00 -0.56 \ ATOM 169 O HIS A 27 -26.799 13.740 37.838 1.00 -0.56 \ ATOM 170 CB HIS A 27 -25.664 11.508 39.601 1.00 -0.56 \ ATOM 171 CG HIS A 27 -24.183 11.758 39.662 1.00 -0.56 \ ATOM 172 ND1 HIS A 27 -23.624 13.003 39.404 1.00 -0.56 \ ATOM 173 CD2 HIS A 27 -23.146 10.930 39.959 1.00 -0.56 \ ATOM 174 CE1 HIS A 27 -22.308 12.923 39.521 1.00 -0.56 \ ATOM 175 NE2 HIS A 27 -21.989 11.667 39.811 1.00 -0.56 \ ATOM 176 N ILE A 28 -25.467 12.858 36.284 1.00 -0.85 \ ATOM 177 CA ILE A 28 -25.462 14.077 35.527 1.00 -0.85 \ ATOM 178 C ILE A 28 -26.544 13.975 34.423 1.00 -0.85 \ ATOM 179 O ILE A 28 -27.174 14.949 34.165 1.00 -0.85 \ ATOM 180 CB ILE A 28 -24.078 14.326 34.894 1.00 -0.85 \ ATOM 181 CG1 ILE A 28 -22.943 14.384 35.942 1.00 -0.85 \ ATOM 182 CG2 ILE A 28 -24.134 15.631 34.037 1.00 -0.85 \ ATOM 183 CD1 ILE A 28 -21.583 14.096 35.308 1.00 -0.85 \ """, "e3kagA2_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e3kagA2_csv", state=0, origin=1) cmd.zoom("e3kagA2_csv", animate=-1)