cmd.read_pdbstr("""\ ATOM 1 N ALA D 0 39.785 -3.969 65.354 1.00 -1.00 \ ATOM 2 CA ALA D 0 40.309 -2.621 65.085 1.00 -1.00 \ ATOM 3 C ALA D 0 40.632 -2.384 63.600 1.00 -1.00 \ ATOM 4 O ALA D 0 40.472 -3.280 62.759 1.00 -1.00 \ ATOM 5 CB ALA D 0 41.532 -2.314 65.948 1.00 -1.00 \ ATOM 6 N MSE D 1 41.125 -1.183 63.290 1.00 0.34 \ ATOM 7 CA MSE D 1 41.085 -0.675 61.920 1.00 0.34 \ ATOM 8 C MSE D 1 41.598 0.781 61.778 1.00 0.34 \ ATOM 9 O MSE D 1 41.312 1.628 62.625 1.00 0.34 \ ATOM 10 CB MSE D 1 39.638 -0.778 61.438 1.00 0.34 \ ATOM 11 CG MSE D 1 39.324 -0.005 60.186 1.00 0.34 \ ATOM 12 SE MSE D 1 38.983 1.925 60.458 1.00 0.34 \ ATOM 13 CE MSE D 1 38.084 2.199 58.717 1.00 0.34 \ ATOM 14 N ASN D 2 42.327 1.081 60.698 1.00 0.35 \ ATOM 15 CA ASN D 2 42.908 2.419 60.538 1.00 0.35 \ ATOM 16 C ASN D 2 42.320 3.233 59.405 1.00 0.35 \ ATOM 17 O ASN D 2 42.098 2.720 58.306 1.00 0.35 \ ATOM 18 CB ASN D 2 44.412 2.339 60.349 1.00 0.35 \ ATOM 19 CG ASN D 2 45.119 1.802 61.579 1.00 0.35 \ ATOM 20 OD1 ASN D 2 44.605 1.886 62.695 1.00 0.35 \ ATOM 21 ND2 ASN D 2 46.301 1.237 61.378 1.00 0.35 \ ATOM 22 N THR D 3 42.077 4.512 59.677 1.00 1.19 \ ATOM 23 CA THR D 3 41.485 5.393 58.684 1.00 1.19 \ ATOM 24 C THR D 3 42.122 6.762 58.751 1.00 1.19 \ ATOM 25 O THR D 3 42.620 7.166 59.797 1.00 1.19 \ ATOM 26 CB THR D 3 39.955 5.526 58.830 1.00 1.19 \ ATOM 27 OG1 THR D 3 39.429 6.173 57.663 1.00 1.19 \ ATOM 28 CG2 THR D 3 39.595 6.343 60.057 1.00 1.19 \ ATOM 29 N VAL D 4 42.086 7.474 57.629 1.00 -0.24 \ ATOM 30 CA VAL D 4 42.856 8.692 57.469 1.00 -0.24 \ ATOM 31 C VAL D 4 42.027 9.962 57.591 1.00 -0.24 \ ATOM 32 O VAL D 4 40.975 10.090 56.952 1.00 -0.24 \ ATOM 33 CB VAL D 4 43.566 8.699 56.112 1.00 -0.24 \ ATOM 34 CG1 VAL D 4 44.254 10.061 55.872 1.00 -0.24 \ ATOM 35 CG2 VAL D 4 44.561 7.528 56.054 1.00 -0.24 \ ATOM 36 N CYS D 5 42.511 10.900 58.404 1.00 1.19 \ ATOM 37 CA CYS D 5 41.830 12.175 58.554 1.00 1.19 \ ATOM 38 C CYS D 5 42.030 13.015 57.308 1.00 1.19 \ ATOM 39 O CYS D 5 43.148 13.392 56.971 1.00 1.19 \ ATOM 40 CB CYS D 5 42.322 12.982 59.763 1.00 1.19 \ ATOM 41 SG CYS D 5 41.730 14.661 59.614 1.00 1.19 \ ATOM 42 N THR D 6 40.915 13.372 56.703 1.00 -0.82 \ ATOM 43 CA THR D 6 40.839 13.955 55.377 1.00 -0.82 \ ATOM 44 C THR D 6 41.286 15.415 55.378 1.00 -0.82 \ ATOM 45 O THR D 6 41.399 16.073 54.342 1.00 -0.82 \ ATOM 46 CB THR D 6 39.376 13.865 54.994 1.00 -0.82 \ ATOM 47 OG1 THR D 6 39.235 13.118 53.793 1.00 -0.82 \ ATOM 48 CG2 THR D 6 38.722 15.223 54.936 1.00 -0.82 \ ATOM 49 N ALA D 7 41.531 15.939 56.565 1.00 -0.33 \ ATOM 50 CA ALA D 7 41.926 17.324 56.668 1.00 -0.33 \ ATOM 51 C ALA D 7 43.415 17.454 57.003 1.00 -0.33 \ ATOM 52 O ALA D 7 44.104 18.270 56.403 1.00 -0.33 \ ATOM 53 CB ALA D 7 41.053 18.044 57.678 1.00 -0.33 \ ATOM 54 N CYS D 8 43.918 16.658 57.956 1.00 1.19 \ ATOM 55 CA CYS D 8 45.334 16.770 58.352 1.00 1.19 \ ATOM 56 C CYS D 8 46.231 15.556 58.042 1.00 1.19 \ ATOM 57 O CYS D 8 47.441 15.621 58.273 1.00 1.19 \ ATOM 58 CB CYS D 8 45.482 17.167 59.826 1.00 1.19 \ ATOM 59 SG CYS D 8 45.305 15.796 61.020 1.00 1.19 \ ATOM 60 N MSE D 9 45.633 14.485 57.507 1.00 -1.09 \ ATOM 61 CA MSE D 9 46.342 13.269 57.062 1.00 -1.09 \ ATOM 62 C MSE D 9 46.728 12.323 58.211 1.00 -1.09 \ ATOM 63 O MSE D 9 47.355 11.267 57.990 1.00 -1.09 \ ATOM 64 CB MSE D 9 47.580 13.602 56.214 1.00 -1.09 \ ATOM 65 CG MSE D 9 47.273 14.307 54.887 1.00 -1.09 \ ATOM 66 SE MSE D 9 46.084 13.222 53.786 0.72 -1.09 \ ATOM 67 CE MSE D 9 44.601 14.456 53.721 1.00 -1.09 \ ATOM 68 N ALA D 10 46.345 12.694 59.427 1.00 -0.24 \ ATOM 69 CA ALA D 10 46.601 11.846 60.599 1.00 -0.24 \ ATOM 70 C ALA D 10 45.821 10.519 60.532 1.00 -0.24 \ ATOM 71 O ALA D 10 44.646 10.482 60.187 1.00 -0.24 \ ATOM 72 CB ALA D 10 46.283 12.603 61.875 1.00 -0.24 \ ATOM 73 N THR D 11 46.502 9.426 60.844 1.00 -0.74 \ ATOM 74 CA THR D 11 45.867 8.118 60.953 1.00 -0.74 \ ATOM 75 C THR D 11 45.103 8.040 62.256 1.00 -0.74 \ ATOM 76 O THR D 11 45.616 8.453 63.284 1.00 -0.74 \ ATOM 77 CB THR D 11 46.914 7.013 61.056 1.00 -0.74 \ ATOM 78 OG1 THR D 11 47.961 7.237 60.100 1.00 -0.74 \ ATOM 79 CG2 THR D 11 46.267 5.643 60.870 1.00 -0.74 \ ATOM 80 N ASN D 12 43.900 7.477 62.212 1.00 1.19 \ ATOM 81 CA ASN D 12 43.051 7.347 63.384 1.00 1.19 \ ATOM 82 C ASN D 12 42.559 5.892 63.514 1.00 1.19 \ ATOM 83 O ASN D 12 41.846 5.392 62.617 1.00 1.19 \ ATOM 84 CB ASN D 12 41.858 8.315 63.301 1.00 1.19 \ ATOM 85 CG ASN D 12 42.232 9.754 63.623 1.00 1.19 \ ATOM 86 OD1 ASN D 12 42.300 10.146 64.793 1.00 1.19 \ ATOM 87 ND2 ASN D 12 42.486 10.559 62.577 1.00 1.19 \ ATOM 88 N ARG D 13 42.937 5.212 64.606 1.00 1.19 \ ATOM 89 CA ARG D 13 42.514 3.820 64.803 1.00 1.19 \ ATOM 90 C ARG D 13 41.171 3.757 65.547 1.00 1.19 \ ATOM 91 O ARG D 13 40.997 4.359 66.612 1.00 1.19 \ ATOM 92 CB ARG D 13 43.590 2.963 65.486 1.00 1.19 \ ATOM 93 CG ARG D 13 43.332 1.454 65.321 1.00 1.19 \ ATOM 94 CD ARG D 13 44.287 0.576 66.138 1.00 1.19 \ ATOM 95 NE ARG D 13 45.633 1.143 66.153 1.00 1.19 \ ATOM 96 CZ ARG D 13 46.252 1.623 67.236 1.00 1.19 \ ATOM 97 NH1 ARG D 13 45.661 1.592 68.435 1.00 1.19 \ ATOM 98 NH2 ARG D 13 47.481 2.130 67.123 1.00 1.19 \ ATOM 99 N LEU D 14 40.225 3.028 64.955 1.00 -0.37 \ ATOM 100 CA LEU D 14 38.831 3.014 65.380 1.00 -0.37 \ ATOM 101 C LEU D 14 38.404 1.576 65.482 1.00 -0.37 \ ATOM 102 O LEU D 14 38.999 0.736 64.808 1.00 -0.37 \ ATOM 103 CB LEU D 14 37.981 3.717 64.324 1.00 -0.37 \ ATOM 104 CG LEU D 14 38.460 5.159 64.135 1.00 -0.37 \ ATOM 105 CD1 LEU D 14 37.665 5.871 63.070 1.00 -0.37 \ ATOM 106 CD2 LEU D 14 38.429 5.947 65.487 1.00 -0.37 \ ATOM 107 N PRO D 15 37.374 1.275 66.312 1.00 0.34 \ ATOM 108 CA PRO D 15 36.885 -0.114 66.361 1.00 0.34 \ ATOM 109 C PRO D 15 36.318 -0.502 64.989 1.00 0.34 \ ATOM 110 O PRO D 15 35.807 0.385 64.285 1.00 0.34 \ ATOM 111 CB PRO D 15 35.773 -0.061 67.417 1.00 0.34 \ ATOM 112 CG PRO D 15 35.319 1.367 67.436 1.00 0.34 \ ATOM 113 CD PRO D 15 36.534 2.191 67.116 1.00 0.34 \ ATOM 114 N GLU D 16 36.402 -1.771 64.595 1.00 -1.08 \ ATOM 115 CA GLU D 16 35.968 -2.096 63.239 1.00 -1.08 \ ATOM 116 C GLU D 16 34.455 -1.977 63.037 1.00 -1.08 \ ATOM 117 O GLU D 16 33.989 -1.612 61.957 1.00 -1.08 \ ATOM 118 CB GLU D 16 36.480 -3.446 62.782 1.00 -1.08 \ ATOM 119 CG GLU D 16 36.494 -3.519 61.283 1.00 -1.08 \ ATOM 120 CD GLU D 16 37.257 -4.704 60.783 1.00 -1.08 \ ATOM 121 OE1 GLU D 16 37.430 -5.670 61.559 1.00 -1.08 \ ATOM 122 OE2 GLU D 16 37.688 -4.663 59.614 1.00 -1.08 \ ATOM 123 N GLU D 17 33.698 -2.284 64.085 1.00 -0.73 \ ATOM 124 CA GLU D 17 32.295 -1.896 64.150 1.00 -0.73 \ ATOM 125 C GLU D 17 32.164 -0.801 65.188 1.00 -0.73 \ ATOM 126 O GLU D 17 32.541 -0.990 66.344 1.00 -0.73 \ ATOM 127 CB GLU D 17 31.432 -3.058 64.593 1.00 -0.73 \ ATOM 128 CG GLU D 17 31.728 -4.349 63.913 1.00 -0.73 \ ATOM 129 CD GLU D 17 31.077 -5.505 64.638 1.00 -0.73 \ ATOM 130 OE1 GLU D 17 30.787 -5.354 65.854 1.00 -0.73 \ ATOM 131 OE2 GLU D 17 30.843 -6.555 63.998 1.00 -0.73 \ ATOM 132 N ARG D 18 31.602 0.327 64.781 1.00 -0.26 \ ATOM 133 CA ARG D 18 31.564 1.517 65.622 1.00 -0.26 \ ATOM 134 C ARG D 18 30.127 1.861 66.029 1.00 -0.26 \ ATOM 135 O ARG D 18 29.170 1.485 65.343 1.00 -0.26 \ ATOM 136 CB ARG D 18 32.159 2.691 64.851 1.00 -0.26 \ ATOM 137 CG ARG D 18 31.229 3.190 63.771 1.00 -0.26 \ ATOM 138 CD ARG D 18 31.860 4.268 62.914 1.00 -0.26 \ ATOM 139 NE ARG D 18 32.855 3.720 62.019 1.00 -0.26 \ ATOM 140 CZ ARG D 18 32.720 3.640 60.695 1.00 -0.26 \ ATOM 141 NH1 ARG D 18 33.709 3.114 59.981 1.00 -0.26 \ ATOM 142 NH2 ARG D 18 31.622 4.095 60.088 1.00 -0.26 \ ATOM 143 N ILE D 19 29.978 2.597 67.127 1.00 -1.40 \ ATOM 144 CA ILE D 19 28.654 2.995 67.615 1.00 -1.40 \ ATOM 145 C ILE D 19 27.951 3.955 66.644 1.00 -1.40 \ ATOM 146 O ILE D 19 26.823 3.727 66.218 1.00 -1.40 \ ATOM 147 CB ILE D 19 28.751 3.647 69.024 1.00 -1.40 \ ATOM 148 CG1 ILE D 19 29.774 2.909 69.871 1.00 -1.40 \ ATOM 149 CG2 ILE D 19 27.381 3.688 69.723 1.00 -1.40 \ ATOM 150 CD1 ILE D 19 29.595 3.173 71.334 1.00 -1.40 \ ATOM 151 N ASP D 20 28.632 5.028 66.290 1.00 -1.64 \ ATOM 152 CA ASP D 20 28.057 6.063 65.453 1.00 -1.64 \ ATOM 153 C ASP D 20 29.071 6.388 64.356 1.00 -1.64 \ ATOM 154 O ASP D 20 30.111 5.743 64.287 1.00 -1.64 \ ATOM 155 CB ASP D 20 27.835 7.293 66.317 1.00 -1.64 \ ATOM 156 CG ASP D 20 29.008 7.553 67.268 1.00 -1.64 \ ATOM 157 OD1 ASP D 20 30.091 7.950 66.763 1.00 -1.64 \ ATOM 158 OD2 ASP D 20 28.852 7.371 68.508 1.00 -1.64 \ ATOM 159 N ASP D 21 28.797 7.390 63.519 1.00 0.25 \ ATOM 160 CA ASP D 21 29.816 7.861 62.559 1.00 0.25 \ ATOM 161 C ASP D 21 30.455 9.195 62.967 1.00 0.25 \ ATOM 162 O ASP D 21 30.933 9.939 62.104 1.00 0.25 \ ATOM 163 CB ASP D 21 29.256 7.991 61.123 1.00 0.25 \ ATOM 164 CG ASP D 21 29.061 6.650 60.434 1.00 0.25 \ ATOM 165 OD1 ASP D 21 29.534 5.628 60.963 1.00 0.25 \ ATOM 166 OD2 ASP D 21 28.440 6.616 59.345 1.00 0.25 \ ATOM 167 N GLY D 22 30.472 9.499 64.265 1.00 -1.60 \ ATOM 168 CA GLY D 22 30.854 10.836 64.731 1.00 -1.60 \ ATOM 169 C GLY D 22 32.306 11.045 65.128 1.00 -1.60 \ ATOM 170 O GLY D 22 32.694 12.124 65.587 1.00 -1.60 \ ATOM 171 N ALA D 23 33.126 10.019 64.957 1.00 1.19 \ ATOM 172 CA ALA D 23 34.517 10.101 65.396 1.00 1.19 \ ATOM 173 C ALA D 23 35.204 11.360 64.842 1.00 1.19 \ ATOM 174 O ALA D 23 34.996 11.727 63.687 1.00 1.19 \ ATOM 175 CB ALA D 23 35.267 8.844 65.004 1.00 1.19 \ ATOM 176 N LYS D 24 35.983 12.042 65.691 1.00 0.28 \ ATOM 177 CA LYS D 24 36.711 13.233 65.263 1.00 0.28 \ ATOM 178 C LYS D 24 38.191 12.902 65.274 1.00 0.28 \ ATOM 179 O LYS D 24 38.674 12.214 66.191 1.00 0.28 \ ATOM 180 CB LYS D 24 36.435 14.435 66.175 1.00 0.28 \ ATOM 181 CG LYS D 24 35.071 14.421 66.849 1.00 0.28 \ ATOM 182 CD LYS D 24 33.954 14.827 65.924 1.00 0.28 \ ATOM 183 CE LYS D 24 33.534 16.256 66.186 1.00 0.28 \ ATOM 184 NZ LYS D 24 33.083 16.879 64.908 1.00 0.28 \ ATOM 185 N CYS D 25 38.910 13.350 64.243 1.00 1.19 \ ATOM 186 CA CYS D 25 40.344 13.159 64.233 1.00 1.19 \ ATOM 187 C CYS D 25 40.905 13.415 65.626 1.00 1.19 \ ATOM 188 O CYS D 25 40.567 14.398 66.255 1.00 1.19 \ ATOM 189 CB CYS D 25 41.018 14.114 63.273 1.00 1.19 \ ATOM 190 SG CYS D 25 42.807 13.944 63.305 1.00 1.19 \ ATOM 191 N GLY D 26 41.806 12.557 66.079 1.00 1.19 \ ATOM 192 CA GLY D 26 42.416 12.751 67.389 1.00 1.19 \ ATOM 193 C GLY D 26 43.478 13.844 67.385 1.00 1.19 \ ATOM 194 O GLY D 26 43.853 14.337 68.458 1.00 1.19 \ ATOM 195 N ARG D 27 43.976 14.230 66.199 1.00 0.35 \ ATOM 196 CA ARG D 27 44.949 15.324 66.140 1.00 0.35 \ ATOM 197 C ARG D 27 44.296 16.682 65.947 1.00 0.35 \ ATOM 198 O ARG D 27 44.722 17.681 66.534 1.00 0.35 \ ATOM 199 CB ARG D 27 46.040 15.119 65.067 1.00 0.35 \ ATOM 200 CG ARG D 27 47.036 16.301 65.044 1.00 0.35 \ ATOM 201 CD ARG D 27 48.365 16.010 64.335 1.00 0.35 \ ATOM 202 NE ARG D 27 48.285 16.158 62.878 1.00 0.35 \ ATOM 203 CZ ARG D 27 49.168 15.623 62.044 1.00 0.35 \ ATOM 204 NH1 ARG D 27 50.180 14.909 62.535 1.00 0.35 \ ATOM 205 NH2 ARG D 27 49.036 15.775 60.724 1.00 0.35 \ ATOM 206 N CYS D 28 43.271 16.744 65.111 1.00 1.19 \ ATOM 207 CA CYS D 28 42.778 18.063 64.753 1.00 1.19 \ ATOM 208 C CYS D 28 41.291 18.315 64.980 1.00 1.19 \ ATOM 209 O CYS D 28 40.825 19.402 64.711 1.00 1.19 \ ATOM 210 CB CYS D 28 43.178 18.383 63.303 1.00 1.19 \ ATOM 211 SG CYS D 28 42.140 17.649 62.022 1.00 1.19 \ ATOM 212 N GLY D 29 40.561 17.320 65.473 1.00 -0.25 \ ATOM 213 CA GLY D 29 39.132 17.441 65.727 1.00 -0.25 \ ATOM 214 C GLY D 29 38.240 17.351 64.494 1.00 -0.25 \ ATOM 215 O GLY D 29 37.047 17.581 64.556 1.00 -0.25 \ ATOM 216 N HIS D 30 38.804 17.006 63.353 1.00 -1.35 \ ATOM 217 CA HIS D 30 37.974 17.020 62.154 1.00 -1.35 \ ATOM 218 C HIS D 30 37.006 15.811 62.083 1.00 -1.35 \ ATOM 219 O HIS D 30 37.392 14.686 62.376 1.00 -1.35 \ ATOM 220 CB HIS D 30 38.845 17.135 60.906 1.00 -1.35 \ ATOM 221 CG HIS D 30 38.069 17.238 59.632 1.00 -1.35 \ ATOM 222 ND1 HIS D 30 37.986 16.197 58.732 1.00 -1.35 \ ATOM 223 CD2 HIS D 30 37.344 18.254 59.103 1.00 -1.35 \ ATOM 224 CE1 HIS D 30 37.255 16.576 57.696 1.00 -1.35 \ ATOM 225 NE2 HIS D 30 36.846 17.818 57.900 1.00 -1.35 \ ATOM 226 N SER D 31 35.753 16.034 61.706 1.00 -1.63 \ ATOM 227 CA SER D 31 34.842 14.900 61.566 1.00 -1.63 \ ATOM 228 C SER D 31 35.440 13.904 60.588 1.00 -1.63 \ ATOM 229 O SER D 31 35.667 14.242 59.430 1.00 -1.63 \ ATOM 230 CB SER D 31 33.483 15.362 61.052 1.00 -1.63 \ ATOM 231 OG SER D 31 32.918 16.293 61.955 1.00 -1.63 \ ATOM 232 N LEU D 32 35.692 12.686 61.052 1.00 1.19 \ ATOM 233 CA LEU D 32 36.335 11.678 60.214 1.00 1.19 \ ATOM 234 C LEU D 32 35.444 11.166 59.075 1.00 1.19 \ ATOM 235 O LEU D 32 35.942 10.576 58.119 1.00 1.19 \ ATOM 236 CB LEU D 32 36.869 10.506 61.069 1.00 1.19 \ ATOM 237 CG LEU D 32 37.961 10.893 62.077 1.00 1.19 \ ATOM 238 CD1 LEU D 32 38.385 9.769 63.035 1.00 1.19 \ ATOM 239 CD2 LEU D 32 39.177 11.417 61.312 1.00 1.19 \ ATOM 240 N PHE D 33 34.138 11.397 59.168 1.00 -1.00 \ ATOM 241 CA PHE D 33 33.192 10.950 58.127 1.00 -1.00 \ ATOM 242 C PHE D 33 32.298 12.077 57.615 1.00 -1.00 \ ATOM 243 O PHE D 33 31.079 12.006 57.744 1.00 -1.00 \ ATOM 244 CB PHE D 33 32.326 9.801 58.659 1.00 -1.00 \ ATOM 245 CG PHE D 33 33.134 8.666 59.169 1.00 -1.00 \ ATOM 246 CD1 PHE D 33 33.922 7.923 58.298 1.00 -1.00 \ ATOM 247 CD2 PHE D 33 33.161 8.361 60.512 1.00 -1.00 \ ATOM 248 CE1 PHE D 33 34.727 6.880 58.765 1.00 -1.00 \ ATOM 249 CE2 PHE D 33 33.958 7.317 60.996 1.00 -1.00 \ ATOM 250 CZ PHE D 33 34.752 6.574 60.119 1.00 -1.00 \ ATOM 251 N ASP D 34 32.891 13.122 57.040 1.00 -1.00 \ ATOM 252 CA ASP D 34 32.085 14.282 56.689 1.00 -1.00 \ ATOM 253 C ASP D 34 31.356 14.120 55.340 1.00 -1.00 \ ATOM 254 O ASP D 34 30.471 14.911 54.993 1.00 -1.00 \ ATOM 255 CB ASP D 34 32.906 15.560 56.765 1.00 -1.00 \ ATOM 256 CG ASP D 34 33.925 15.649 55.671 1.00 -1.00 \ ATOM 257 OD1 ASP D 34 33.858 14.823 54.729 1.00 -1.00 \ ATOM 258 OD2 ASP D 34 34.775 16.553 55.739 1.00 -1.00 \ """, "e3p2aD1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e3p2aD1_csv", state=0, origin=1) cmd.zoom("e3p2aD1_csv", animate=-1)