cmd.read_pdbstr("""\ ATOM 1 N VAL H 5 3.704 24.512 24.732 1.00 0.96 \ ATOM 2 CA VAL H 5 2.588 24.063 25.571 1.00 0.96 \ ATOM 3 C VAL H 5 2.416 24.922 26.838 1.00 0.96 \ ATOM 4 O VAL H 5 3.341 25.009 27.656 1.00 0.96 \ ATOM 5 CB VAL H 5 2.655 22.551 25.897 1.00 0.96 \ ATOM 6 N LYS H 6 1.228 25.562 26.985 1.00 0.06 \ ATOM 7 CA LYS H 6 0.928 26.421 28.133 1.00 0.06 \ ATOM 8 C LYS H 6 -0.087 25.810 29.101 1.00 0.06 \ ATOM 9 O LYS H 6 -1.168 25.400 28.682 1.00 0.06 \ ATOM 10 CB LYS H 6 0.503 27.829 27.686 1.00 0.06 \ ATOM 11 N THR H 7 0.281 25.747 30.400 1.00 -0.54 \ ATOM 12 CA THR H 7 -0.527 25.204 31.499 1.00 -0.54 \ ATOM 13 C THR H 7 -1.744 26.080 31.782 1.00 -0.54 \ ATOM 14 O THR H 7 -1.700 27.288 31.531 1.00 -0.54 \ ATOM 15 CB THR H 7 0.332 25.059 32.767 1.00 -0.54 \ ATOM 16 N LEU H 8 -2.819 25.473 32.338 1.00 -0.56 \ ATOM 17 CA LEU H 8 -4.063 26.161 32.710 1.00 -0.56 \ ATOM 18 C LEU H 8 -3.815 27.336 33.682 1.00 -0.56 \ ATOM 19 O LEU H 8 -4.584 28.298 33.681 1.00 -0.56 \ ATOM 20 CB LEU H 8 -5.087 25.169 33.290 1.00 -0.56 \ ATOM 21 N THR H 9 -2.713 27.269 34.464 1.00 -0.52 \ ATOM 22 CA THR H 9 -2.279 28.280 35.439 1.00 -0.52 \ ATOM 23 C THR H 9 -1.506 29.462 34.815 1.00 -0.52 \ ATOM 24 O THR H 9 -1.301 30.474 35.486 1.00 -0.52 \ ATOM 25 CB THR H 9 -1.468 27.611 36.555 1.00 -0.52 \ ATOM 26 N GLY H 10 -1.097 29.327 33.554 1.00 -0.26 \ ATOM 27 CA GLY H 10 -0.357 30.360 32.835 1.00 -0.26 \ ATOM 28 C GLY H 10 1.095 30.023 32.539 1.00 -0.26 \ ATOM 29 O GLY H 10 1.728 30.689 31.708 1.00 -0.26 \ ATOM 30 N LYS H 11 1.638 28.985 33.224 1.00 -0.33 \ ATOM 31 CA LYS H 11 3.024 28.512 33.076 1.00 -0.33 \ ATOM 32 C LYS H 11 3.319 27.941 31.678 1.00 -0.33 \ ATOM 33 O LYS H 11 2.402 27.458 31.005 1.00 -0.33 \ ATOM 34 CB LYS H 11 3.371 27.485 34.166 1.00 -0.33 \ ATOM 35 N THR H 12 4.596 28.029 31.240 1.00 -0.54 \ ATOM 36 CA THR H 12 5.046 27.544 29.927 1.00 -0.54 \ ATOM 37 C THR H 12 6.180 26.532 30.128 1.00 -0.54 \ ATOM 38 O THR H 12 6.210 25.476 29.499 1.00 -0.54 \ ATOM 39 CB THR H 12 5.459 28.727 29.013 1.00 -0.54 \ ATOM 40 OG1 THR H 12 4.478 29.768 29.074 1.00 -0.54 \ ATOM 41 CG2 THR H 12 5.654 28.312 27.562 1.00 -0.54 \ ATOM 42 N PRO H 19 8.355 15.177 17.808 1.00 -0.60 \ ATOM 43 CA PRO H 19 8.511 15.836 16.503 1.00 -0.60 \ ATOM 44 C PRO H 19 7.634 15.257 15.385 1.00 -0.60 \ ATOM 45 O PRO H 19 7.505 15.891 14.329 1.00 -0.60 \ ATOM 46 CB PRO H 19 10.007 15.692 16.208 1.00 -0.60 \ ATOM 47 N SER H 20 7.040 14.056 15.612 1.00 -0.53 \ ATOM 48 CA SER H 20 6.152 13.344 14.674 1.00 -0.53 \ ATOM 49 C SER H 20 5.430 12.198 15.391 1.00 -0.53 \ ATOM 50 O SER H 20 4.380 11.740 14.940 1.00 -0.53 \ ATOM 51 CB SER H 20 6.931 12.799 13.478 1.00 -0.53 \ ATOM 52 N THR H 22 3.275 11.714 18.740 1.00 -0.14 \ ATOM 53 CA THR H 22 2.342 11.364 17.670 1.00 -0.14 \ ATOM 54 C THR H 22 0.909 11.794 17.997 1.00 -0.14 \ ATOM 55 O THR H 22 0.298 12.527 17.212 1.00 -0.14 \ ATOM 56 CB THR H 22 2.450 9.876 17.327 1.00 -0.14 \ ATOM 57 N ILE H 23 0.378 11.334 19.149 1.00 1.34 \ ATOM 58 CA ILE H 23 -0.965 11.667 19.626 1.00 1.34 \ ATOM 59 C ILE H 23 -0.925 11.979 21.127 1.00 1.34 \ ATOM 60 O ILE H 23 -0.808 13.154 21.486 1.00 1.34 \ ATOM 61 CB ILE H 23 -2.022 10.600 19.230 1.00 1.34 \ ATOM 62 N GLU H 24 -0.965 10.934 21.991 1.00 -0.59 \ ATOM 63 CA GLU H 24 -0.899 11.054 23.454 1.00 -0.59 \ ATOM 64 C GLU H 24 0.552 11.181 23.944 1.00 -0.59 \ ATOM 65 O GLU H 24 0.778 11.443 25.131 1.00 -0.59 \ ATOM 66 CB GLU H 24 -1.599 9.863 24.132 1.00 -0.59 \ ATOM 67 N ASN H 25 1.529 11.007 23.021 1.00 -0.46 \ ATOM 68 CA ASN H 25 2.970 11.108 23.270 1.00 -0.46 \ ATOM 69 C ASN H 25 3.342 12.505 23.772 1.00 -0.46 \ ATOM 70 O ASN H 25 4.228 12.635 24.625 1.00 -0.46 \ ATOM 71 CB ASN H 25 3.757 10.759 22.004 1.00 -0.46 \ ATOM 72 N VAL H 26 2.640 13.542 23.250 1.00 1.28 \ ATOM 73 CA VAL H 26 2.799 14.945 23.631 1.00 1.28 \ ATOM 74 C VAL H 26 2.316 15.147 25.076 1.00 1.28 \ ATOM 75 O VAL H 26 3.003 15.800 25.867 1.00 1.28 \ ATOM 76 CB VAL H 26 2.065 15.881 22.646 1.00 1.28 \ ATOM 77 N LYS H 27 1.154 14.544 25.421 1.00 -0.17 \ ATOM 78 CA LYS H 27 0.545 14.601 26.752 1.00 -0.17 \ ATOM 79 C LYS H 27 1.333 13.781 27.782 1.00 -0.17 \ ATOM 80 O LYS H 27 1.282 14.098 28.971 1.00 -0.17 \ ATOM 81 CB LYS H 27 -0.922 14.146 26.699 1.00 -0.17 \ ATOM 82 N ALA H 28 2.063 12.740 27.323 1.00 -0.75 \ ATOM 83 CA ALA H 28 2.880 11.859 28.165 1.00 -0.75 \ ATOM 84 C ALA H 28 4.050 12.599 28.830 1.00 -0.75 \ ATOM 85 O ALA H 28 4.368 12.313 29.987 1.00 -0.75 \ ATOM 86 CB ALA H 28 3.399 10.689 27.345 1.00 -0.75 \ ATOM 87 N LYS H 29 4.678 13.552 28.098 1.00 -0.30 \ ATOM 88 CA LYS H 29 5.801 14.367 28.576 1.00 -0.30 \ ATOM 89 C LYS H 29 5.380 15.323 29.707 1.00 -0.30 \ ATOM 90 O LYS H 29 6.134 15.507 30.669 1.00 -0.30 \ ATOM 91 CB LYS H 29 6.432 15.145 27.411 1.00 -0.30 \ ATOM 92 N ILE H 30 4.159 15.898 29.596 1.00 1.19 \ ATOM 93 CA ILE H 30 3.563 16.821 30.563 1.00 1.19 \ ATOM 94 C ILE H 30 3.345 16.180 31.940 1.00 1.19 \ ATOM 95 O ILE H 30 3.286 14.956 32.063 1.00 1.19 \ ATOM 96 CB ILE H 30 2.255 17.415 29.998 1.00 1.19 \ ATOM 97 N GLN H 40 -2.433 13.073 32.855 1.00 -0.65 \ ATOM 98 CA GLN H 40 -2.668 12.767 31.441 1.00 -0.65 \ ATOM 99 C GLN H 40 -4.171 12.593 31.048 1.00 -0.65 \ ATOM 100 O GLN H 40 -4.492 12.504 29.850 1.00 -0.65 \ ATOM 101 CB GLN H 40 -1.821 11.566 30.991 1.00 -0.65 \ ATOM 102 N GLN H 41 -5.081 12.565 32.061 1.00 0.12 \ ATOM 103 CA GLN H 41 -6.540 12.435 31.894 1.00 0.12 \ ATOM 104 C GLN H 41 -7.194 13.726 31.351 1.00 0.12 \ ATOM 105 O GLN H 41 -8.228 13.641 30.686 1.00 0.12 \ ATOM 106 CB GLN H 41 -7.201 12.005 33.211 1.00 0.12 \ ATOM 107 N ARG H 42 -6.590 14.911 31.649 1.00 -0.65 \ ATOM 108 CA ARG H 42 -7.021 16.243 31.192 1.00 -0.65 \ ATOM 109 C ARG H 42 -6.278 16.626 29.884 1.00 -0.65 \ ATOM 110 O ARG H 42 -5.044 16.590 29.845 1.00 -0.65 \ ATOM 111 CB ARG H 42 -6.795 17.292 32.290 1.00 -0.65 \ ATOM 112 N LEU H 43 -7.040 16.963 28.813 1.00 0.53 \ ATOM 113 CA LEU H 43 -6.517 17.267 27.475 1.00 0.53 \ ATOM 114 C LEU H 43 -6.529 18.748 27.027 1.00 0.53 \ ATOM 115 O LEU H 43 -7.067 19.613 27.721 1.00 0.53 \ ATOM 116 CB LEU H 43 -7.154 16.340 26.421 1.00 0.53 \ ATOM 117 N ILE H 44 -5.918 19.010 25.843 1.00 -0.07 \ ATOM 118 CA ILE H 44 -5.686 20.319 25.226 1.00 -0.07 \ ATOM 119 C ILE H 44 -5.916 20.352 23.698 1.00 -0.07 \ ATOM 120 O ILE H 44 -5.950 19.304 23.046 1.00 -0.07 \ ATOM 121 CB ILE H 44 -4.218 20.678 25.534 1.00 -0.07 \ ATOM 122 N PHE H 45 -6.028 21.577 23.132 1.00 0.13 \ ATOM 123 CA PHE H 45 -6.235 21.843 21.698 1.00 0.13 \ ATOM 124 C PHE H 45 -5.575 23.179 21.303 1.00 0.13 \ ATOM 125 O PHE H 45 -5.647 24.151 22.068 1.00 0.13 \ ATOM 126 CB PHE H 45 -7.744 21.879 21.353 1.00 0.13 \ ATOM 127 CG PHE H 45 -8.135 21.509 19.932 1.00 0.13 \ ATOM 128 CD1 PHE H 45 -8.732 20.284 19.655 1.00 0.13 \ ATOM 129 CD2 PHE H 45 -7.968 22.414 18.885 1.00 0.13 \ ATOM 130 CE1 PHE H 45 -9.122 19.957 18.354 1.00 0.13 \ ATOM 131 CE2 PHE H 45 -8.356 22.086 17.583 1.00 0.13 \ ATOM 132 CZ PHE H 45 -8.932 20.861 17.327 1.00 0.13 \ ATOM 133 N ALA H 46 -4.956 23.219 20.092 1.00 -0.56 \ ATOM 134 CA ALA H 46 -4.273 24.395 19.544 1.00 -0.56 \ ATOM 135 C ALA H 46 -4.384 24.535 18.010 1.00 -0.56 \ ATOM 136 O ALA H 46 -3.544 24.023 17.266 1.00 -0.56 \ ATOM 137 CB ALA H 46 -2.817 24.411 19.989 1.00 -0.56 \ ATOM 138 N GLY H 47 -5.415 25.257 17.573 1.00 -0.17 \ ATOM 139 CA GLY H 47 -5.716 25.523 16.171 1.00 -0.17 \ ATOM 140 C GLY H 47 -7.195 25.742 15.919 1.00 -0.17 \ ATOM 141 O GLY H 47 -7.881 26.411 16.699 1.00 -0.17 \ ATOM 142 N ILE H 61 -1.210 18.641 11.925 1.00 -0.41 \ ATOM 143 CA ILE H 61 0.097 18.887 12.540 1.00 -0.41 \ ATOM 144 C ILE H 61 0.738 20.231 12.103 1.00 -0.41 \ ATOM 145 O ILE H 61 0.451 20.730 11.008 1.00 -0.41 \ ATOM 146 CB ILE H 61 1.043 17.679 12.322 1.00 -0.41 \ ATOM 147 N GLN H 62 1.594 20.816 12.979 1.00 -0.65 \ ATOM 148 CA GLN H 62 2.311 22.078 12.737 1.00 -0.65 \ ATOM 149 C GLN H 62 3.615 22.188 13.554 1.00 -0.65 \ ATOM 150 O GLN H 62 3.673 21.724 14.697 1.00 -0.65 \ ATOM 151 CB GLN H 62 1.402 23.294 12.977 1.00 -0.65 \ ATOM 152 N LYS H 63 4.651 22.817 12.951 1.00 0.47 \ ATOM 153 CA LYS H 63 5.989 23.013 13.522 1.00 0.47 \ ATOM 154 C LYS H 63 6.104 24.279 14.405 1.00 0.47 \ ATOM 155 O LYS H 63 6.999 25.106 14.192 1.00 0.47 \ ATOM 156 CB LYS H 63 7.042 23.009 12.398 1.00 0.47 \ ATOM 157 N GLU H 64 5.207 24.401 15.419 1.00 -0.72 \ ATOM 158 CA GLU H 64 5.129 25.528 16.363 1.00 -0.72 \ ATOM 159 C GLU H 64 6.377 25.668 17.241 1.00 -0.72 \ ATOM 160 O GLU H 64 6.684 26.764 17.710 1.00 -0.72 \ ATOM 161 CB GLU H 64 3.868 25.424 17.233 1.00 -0.72 \ ATOM 162 N LEU H 69 -1.792 24.619 23.594 1.00 0.68 \ ATOM 163 CA LEU H 69 -2.473 25.296 24.706 1.00 0.68 \ ATOM 164 C LEU H 69 -3.461 24.371 25.449 1.00 0.68 \ ATOM 165 O LEU H 69 -4.295 23.734 24.796 1.00 0.68 \ ATOM 166 CB LEU H 69 -3.178 26.586 24.215 1.00 0.68 \ ATOM 167 CG LEU H 69 -2.240 27.753 23.883 1.00 0.68 \ ATOM 168 CD1 LEU H 69 -2.512 28.333 22.511 1.00 0.68 \ ATOM 169 CD2 LEU H 69 -2.194 28.776 25.002 1.00 0.68 \ ATOM 170 N VAL H 70 -3.362 24.306 26.807 1.00 -0.37 \ ATOM 171 CA VAL H 70 -4.210 23.482 27.688 1.00 -0.37 \ ATOM 172 C VAL H 70 -5.461 24.223 28.212 1.00 -0.37 \ ATOM 173 O VAL H 70 -5.346 25.209 28.953 1.00 -0.37 \ ATOM 174 CB VAL H 70 -3.414 22.771 28.812 1.00 -0.37 \ ATOM 175 N LEU H 71 -6.653 23.722 27.810 1.00 -0.55 \ ATOM 176 CA LEU H 71 -7.982 24.263 28.107 1.00 -0.55 \ ATOM 177 C LEU H 71 -8.832 23.317 29.000 1.00 -0.55 \ ATOM 178 O LEU H 71 -8.275 22.484 29.708 1.00 -0.55 \ ATOM 179 CB LEU H 71 -8.695 24.527 26.764 1.00 -0.55 \ ATOM 180 N ARG H 72 -10.182 23.487 28.971 1.00 0.36 \ ATOM 181 CA ARG H 72 -11.228 22.666 29.603 1.00 0.36 \ ATOM 182 C ARG H 72 -12.503 22.530 28.631 1.00 0.36 \ ATOM 183 O ARG H 72 -13.624 22.927 28.968 1.00 0.36 \ ATOM 184 CB ARG H 72 -11.521 23.121 31.043 1.00 0.36 \ ATOM 185 N LEU H 73 -12.216 22.027 27.379 1.00 3.69 \ ATOM 186 CA LEU H 73 -12.964 21.562 26.182 1.00 3.69 \ ATOM 187 C LEU H 73 -13.996 22.435 25.468 1.00 3.69 \ ATOM 188 O LEU H 73 -13.650 23.103 24.493 1.00 3.69 \ ATOM 189 CB LEU H 73 -13.467 20.115 26.318 1.00 3.69 \ ATOM 190 N ARG H 74 -15.283 22.292 25.817 1.00 -1.00 \ ATOM 191 CA ARG H 74 -16.347 23.096 25.221 1.00 -1.00 \ ATOM 192 C ARG H 74 -16.463 24.355 26.094 1.00 -1.00 \ ATOM 193 O ARG H 74 -16.892 24.293 27.255 1.00 -1.00 \ ATOM 194 CB ARG H 74 -17.655 22.298 25.151 1.00 -1.00 \ ATOM 195 CG ARG H 74 -18.764 22.955 24.374 1.00 -1.00 \ ATOM 196 CD ARG H 74 -19.157 22.172 23.149 1.00 -1.00 \ ATOM 197 NE ARG H 74 -20.450 22.649 22.659 1.00 -1.00 \ ATOM 198 CZ ARG H 74 -20.624 23.471 21.628 1.00 -1.00 \ ATOM 199 NH1 ARG H 74 -19.580 23.915 20.938 1.00 -1.00 \ ATOM 200 NH2 ARG H 74 -21.848 23.847 21.270 1.00 -1.00 \ ATOM 201 N GLY H 75 -15.995 25.470 25.547 1.00 -1.00 \ ATOM 202 CA GLY H 75 -15.968 26.728 26.279 1.00 -1.00 \ ATOM 203 C GLY H 75 -17.314 27.397 26.376 1.00 -1.00 \ ATOM 204 O GLY H 75 -18.275 26.955 25.753 1.00 -1.00 \ ATOM 205 N GLY H 76 -17.369 28.462 27.158 1.00 -1.00 \ ATOM 206 CA GLY H 76 -18.580 29.231 27.372 1.00 -1.00 \ ATOM 207 C GLY H 76 -19.537 28.544 28.309 1.00 -1.00 \ ATOM 208 O GLY H 76 -20.674 29.051 28.430 1.00 -1.00 \ ATOM 209 OXT GLY H 76 -19.149 27.519 28.929 1.00 -1.00 \ """, "e3phdH1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e3phdH1_csv", state=0, origin=1) cmd.zoom("e3phdH1_csv", animate=-1)