cmd.read_pdbstr("""\ ATOM 1 N PRO D 498 5.428 1.290 26.599 1.00 1.00 \ ATOM 2 CA PRO D 498 4.122 1.909 26.345 1.00 1.00 \ ATOM 3 C PRO D 498 3.785 3.143 27.187 1.00 1.00 \ ATOM 4 O PRO D 498 2.876 3.891 26.824 1.00 1.00 \ ATOM 5 CB PRO D 498 3.135 0.777 26.650 1.00 1.00 \ ATOM 6 CG PRO D 498 3.836 -0.088 27.620 1.00 1.00 \ ATOM 7 CD PRO D 498 5.299 0.000 27.305 1.00 1.00 \ ATOM 8 N TYR D 499 4.491 3.346 28.296 1.00 1.06 \ ATOM 9 CA TYR D 499 4.244 4.493 29.175 1.00 1.06 \ ATOM 10 C TYR D 499 5.090 5.686 28.738 1.00 1.06 \ ATOM 11 O TYR D 499 6.283 5.750 29.034 1.00 1.06 \ ATOM 12 CB TYR D 499 4.522 4.119 30.635 1.00 1.06 \ ATOM 13 CG TYR D 499 3.684 2.950 31.088 1.00 1.06 \ ATOM 14 CD1 TYR D 499 4.206 1.665 31.111 1.00 1.06 \ ATOM 15 CD2 TYR D 499 2.354 3.126 31.452 1.00 1.06 \ ATOM 16 CE1 TYR D 499 3.432 0.586 31.506 1.00 1.06 \ ATOM 17 CE2 TYR D 499 1.572 2.054 31.850 1.00 1.06 \ ATOM 18 CZ TYR D 499 2.119 0.787 31.873 1.00 1.06 \ ATOM 19 OH TYR D 499 1.356 -0.281 32.264 1.00 1.06 \ ATOM 20 N LYS D 500 4.456 6.617 28.024 1.00 -0.99 \ ATOM 21 CA LYS D 500 5.134 7.783 27.464 1.00 -0.99 \ ATOM 22 C LYS D 500 5.087 8.950 28.441 1.00 -0.99 \ ATOM 23 O LYS D 500 4.037 9.244 29.016 1.00 -0.99 \ ATOM 24 CB LYS D 500 4.471 8.221 26.146 1.00 -0.99 \ ATOM 25 CG LYS D 500 4.262 7.113 25.115 1.00 -0.99 \ ATOM 26 CD LYS D 500 5.571 6.463 24.675 1.00 -0.99 \ ATOM 27 CE LYS D 500 5.313 5.273 23.758 1.00 -0.99 \ ATOM 28 NZ LYS D 500 6.561 4.533 23.426 1.00 -0.99 \ ATOM 29 N CYS D 501 6.226 9.613 28.620 1.00 1.94 \ ATOM 30 CA CYS D 501 6.277 10.857 29.377 1.00 1.94 \ ATOM 31 C CYS D 501 5.607 11.929 28.530 1.00 1.94 \ ATOM 32 O CYS D 501 5.895 12.043 27.337 1.00 1.94 \ ATOM 33 CB CYS D 501 7.726 11.251 29.682 1.00 1.94 \ ATOM 34 SG CYS D 501 7.919 12.781 30.637 1.00 1.94 \ ATOM 35 N GLU D 502 4.698 12.690 29.132 1.00 -0.89 \ ATOM 36 CA GLU D 502 4.010 13.760 28.412 1.00 -0.89 \ ATOM 37 C GLU D 502 4.891 15.001 28.263 1.00 -0.89 \ ATOM 38 O GLU D 502 4.668 15.814 27.361 1.00 -0.89 \ ATOM 39 CB GLU D 502 2.679 14.122 29.092 1.00 -0.89 \ ATOM 40 CG GLU D 502 2.791 14.855 30.431 1.00 -0.89 \ ATOM 41 CD GLU D 502 1.444 15.347 30.944 1.00 -0.89 \ ATOM 42 OE1 GLU D 502 0.691 15.969 30.165 1.00 -0.89 \ ATOM 43 OE2 GLU D 502 1.138 15.116 32.132 1.00 -0.89 \ ATOM 44 N PHE D 503 5.885 15.138 29.143 1.00 -0.49 \ ATOM 45 CA PHE D 503 6.715 16.347 29.211 1.00 -0.49 \ ATOM 46 C PHE D 503 7.989 16.261 28.367 1.00 -0.49 \ ATOM 47 O PHE D 503 8.528 17.288 27.965 1.00 -0.49 \ ATOM 48 CB PHE D 503 7.078 16.665 30.668 1.00 -0.49 \ ATOM 49 CG PHE D 503 5.890 17.012 31.534 1.00 -0.49 \ ATOM 50 CD1 PHE D 503 5.062 18.076 31.207 1.00 -0.49 \ ATOM 51 CD2 PHE D 503 5.609 16.282 32.684 1.00 -0.49 \ ATOM 52 CE1 PHE D 503 3.970 18.401 32.003 1.00 -0.49 \ ATOM 53 CE2 PHE D 503 4.517 16.605 33.485 1.00 -0.49 \ ATOM 54 CZ PHE D 503 3.699 17.665 33.142 1.00 -0.49 \ ATOM 55 N CYS D 504 8.475 15.047 28.114 1.00 1.94 \ ATOM 56 CA CYS D 504 9.646 14.841 27.256 1.00 1.94 \ ATOM 57 C CYS D 504 9.454 13.577 26.419 1.00 1.94 \ ATOM 58 O CYS D 504 8.359 13.014 26.387 1.00 1.94 \ ATOM 59 CB CYS D 504 10.926 14.767 28.103 1.00 1.94 \ ATOM 60 SG CYS D 504 11.099 13.286 29.146 1.00 1.94 \ ATOM 61 N GLU D 505 10.510 13.131 25.741 1.00 -0.95 \ ATOM 62 CA GLU D 505 10.432 11.941 24.888 1.00 -0.95 \ ATOM 63 C GLU D 505 10.848 10.650 25.610 1.00 -0.95 \ ATOM 64 O GLU D 505 11.099 9.624 24.969 1.00 -0.95 \ ATOM 65 CB GLU D 505 11.278 12.151 23.629 1.00 -0.95 \ ATOM 66 CG GLU D 505 10.746 11.428 22.390 1.00 -0.95 \ ATOM 67 CD GLU D 505 11.037 12.180 21.104 1.00 -0.95 \ ATOM 68 OE1 GLU D 505 10.177 12.157 20.197 1.00 -0.95 \ ATOM 69 OE2 GLU D 505 12.119 12.797 21.001 1.00 -0.95 \ ATOM 70 N TYR D 506 10.914 10.699 26.939 1.00 1.06 \ ATOM 71 CA TYR D 506 11.162 9.502 27.738 1.00 1.06 \ ATOM 72 C TYR D 506 9.976 8.545 27.645 1.00 1.06 \ ATOM 73 O TYR D 506 8.823 8.975 27.580 1.00 1.06 \ ATOM 74 CB TYR D 506 11.416 9.874 29.203 1.00 1.06 \ ATOM 75 CG TYR D 506 11.478 8.693 30.145 1.00 1.06 \ ATOM 76 CD1 TYR D 506 12.676 8.027 30.391 1.00 1.06 \ ATOM 77 CD2 TYR D 506 10.332 8.239 30.790 1.00 1.06 \ ATOM 78 CE1 TYR D 506 12.722 6.933 31.253 1.00 1.06 \ ATOM 79 CE2 TYR D 506 10.370 7.163 31.645 1.00 1.06 \ ATOM 80 CZ TYR D 506 11.562 6.513 31.878 1.00 1.06 \ ATOM 81 OH TYR D 506 11.579 5.440 32.739 1.00 1.06 \ ATOM 82 N ALA D 507 10.280 7.250 27.627 1.00 -0.51 \ ATOM 83 CA ALA D 507 9.275 6.199 27.684 1.00 -0.51 \ ATOM 84 C ALA D 507 9.764 5.117 28.645 1.00 -0.51 \ ATOM 85 O ALA D 507 10.965 5.004 28.887 1.00 -0.51 \ ATOM 86 CB ALA D 507 9.035 5.621 26.301 1.00 -0.51 \ ATOM 87 N ALA D 508 8.837 4.337 29.196 1.00 -0.06 \ ATOM 88 CA ALA D 508 9.185 3.274 30.144 1.00 -0.06 \ ATOM 89 C ALA D 508 8.343 2.029 29.921 1.00 -0.06 \ ATOM 90 O ALA D 508 7.181 2.120 29.514 1.00 -0.06 \ ATOM 91 CB ALA D 508 9.015 3.761 31.565 1.00 -0.06 \ ATOM 92 N ALA D 509 8.943 0.874 30.200 1.00 -0.51 \ ATOM 93 CA ALA D 509 8.265 -0.413 30.103 1.00 -0.51 \ ATOM 94 C ALA D 509 7.260 -0.613 31.230 1.00 -0.51 \ ATOM 95 O ALA D 509 6.220 -1.247 31.031 1.00 -0.51 \ ATOM 96 CB ALA D 509 9.290 -1.549 30.118 1.00 -0.51 \ ATOM 97 N GLN D 510 7.583 -0.096 32.415 1.00 -1.02 \ ATOM 98 CA GLN D 510 6.736 -0.272 33.592 1.00 -1.02 \ ATOM 99 C GLN D 510 6.334 1.064 34.205 1.00 -1.02 \ ATOM 100 O GLN D 510 7.036 2.070 34.056 1.00 -1.02 \ ATOM 101 CB GLN D 510 7.440 -1.155 34.618 1.00 -1.02 \ ATOM 102 CG GLN D 510 7.899 -2.493 34.032 1.00 -1.02 \ ATOM 103 CD GLN D 510 8.123 -3.577 35.070 1.00 -1.02 \ ATOM 104 OE1 GLN D 510 7.530 -3.570 36.158 1.00 -1.02 \ ATOM 105 NE2 GLN D 510 8.966 -4.542 34.722 1.00 -1.02 \ ATOM 106 N LYS D 511 5.188 1.073 34.878 1.00 -0.38 \ ATOM 107 CA LYS D 511 4.623 2.317 35.407 1.00 -0.38 \ ATOM 108 C LYS D 511 5.534 2.986 36.428 1.00 -0.38 \ ATOM 109 O LYS D 511 5.608 4.210 36.474 1.00 -0.38 \ ATOM 110 CB LYS D 511 3.241 2.081 36.043 1.00 -0.38 \ ATOM 111 CG LYS D 511 2.069 2.503 35.181 1.00 -0.38 \ ATOM 112 CD LYS D 511 0.805 2.736 36.010 1.00 -0.38 \ ATOM 113 CE LYS D 511 -0.232 3.557 35.243 1.00 -0.38 \ ATOM 114 NZ LYS D 511 -1.226 4.218 36.140 1.00 -0.38 \ ATOM 115 N THR D 512 6.209 2.184 37.252 1.00 -0.30 \ ATOM 116 CA THR D 512 7.038 2.720 38.337 1.00 -0.30 \ ATOM 117 C THR D 512 8.211 3.561 37.812 1.00 -0.30 \ ATOM 118 O THR D 512 8.536 4.600 38.389 1.00 -0.30 \ ATOM 119 CB THR D 512 7.531 1.594 39.279 1.00 -0.30 \ ATOM 120 OG1 THR D 512 6.403 1.023 39.951 1.00 -0.30 \ ATOM 121 CG2 THR D 512 8.514 2.126 40.325 1.00 -0.30 \ ATOM 122 N SER D 513 8.818 3.130 36.708 1.00 -0.70 \ ATOM 123 CA SER D 513 9.921 3.875 36.081 1.00 -0.70 \ ATOM 124 C SER D 513 9.520 5.268 35.602 1.00 -0.70 \ ATOM 125 O SER D 513 10.279 6.228 35.763 1.00 -0.70 \ ATOM 126 CB SER D 513 10.492 3.087 34.902 1.00 -0.70 \ ATOM 127 OG SER D 513 10.862 1.781 35.305 1.00 -0.70 \ ATOM 128 N LEU D 514 8.342 5.378 34.995 1.00 1.47 \ ATOM 129 CA LEU D 514 7.848 6.676 34.538 1.00 1.47 \ ATOM 130 C LEU D 514 7.560 7.589 35.732 1.00 1.47 \ ATOM 131 O LEU D 514 7.890 8.768 35.706 1.00 1.47 \ ATOM 132 CB LEU D 514 6.595 6.515 33.663 1.00 1.47 \ ATOM 133 CG LEU D 514 5.893 7.804 33.219 1.00 1.47 \ ATOM 134 CD1 LEU D 514 6.853 8.748 32.474 1.00 1.47 \ ATOM 135 CD2 LEU D 514 4.682 7.480 32.356 1.00 1.47 \ ATOM 136 N ARG D 515 6.949 7.031 36.775 1.00 -0.58 \ ATOM 137 CA ARG D 515 6.623 7.792 37.984 1.00 -0.58 \ ATOM 138 C ARG D 515 7.880 8.357 38.656 1.00 -0.58 \ ATOM 139 O ARG D 515 7.911 9.522 39.064 1.00 -0.58 \ ATOM 140 CB ARG D 515 5.837 6.896 38.940 1.00 -0.58 \ ATOM 141 CG ARG D 515 5.698 7.384 40.381 1.00 -0.58 \ ATOM 142 CD ARG D 515 4.644 6.557 41.127 1.00 -0.58 \ ATOM 143 NE ARG D 515 4.638 5.157 40.686 1.00 -0.58 \ ATOM 144 CZ ARG D 515 3.700 4.260 40.988 1.00 -0.58 \ ATOM 145 NH1 ARG D 515 2.671 4.575 41.773 1.00 -0.58 \ ATOM 146 NH2 ARG D 515 3.807 3.023 40.508 1.00 -0.58 \ ATOM 147 N TYR D 516 8.911 7.524 38.754 1.00 -1.28 \ ATOM 148 CA TYR D 516 10.207 7.935 39.280 1.00 -1.28 \ ATOM 149 C TYR D 516 10.826 9.012 38.383 1.00 -1.28 \ ATOM 150 O TYR D 516 11.408 9.981 38.873 1.00 -1.28 \ ATOM 151 CB TYR D 516 11.141 6.719 39.401 1.00 -1.28 \ ATOM 152 CG TYR D 516 12.584 7.064 39.701 1.00 -1.28 \ ATOM 153 CD1 TYR D 516 13.060 7.113 41.009 1.00 -1.28 \ ATOM 154 CD2 TYR D 516 13.476 7.342 38.670 1.00 -1.28 \ ATOM 155 CE1 TYR D 516 14.388 7.430 41.277 1.00 -1.28 \ ATOM 156 CE2 TYR D 516 14.795 7.672 38.926 1.00 -1.28 \ ATOM 157 CZ TYR D 516 15.250 7.713 40.229 1.00 -1.28 \ ATOM 158 OH TYR D 516 16.567 8.038 40.485 1.00 -1.28 \ ATOM 159 N HIS D 517 10.693 8.833 37.072 1.00 1.94 \ ATOM 160 CA HIS D 517 11.212 9.795 36.110 1.00 1.94 \ ATOM 161 C HIS D 517 10.543 11.164 36.264 1.00 1.94 \ ATOM 162 O HIS D 517 11.221 12.198 36.228 1.00 1.94 \ ATOM 163 CB HIS D 517 11.030 9.276 34.681 1.00 1.94 \ ATOM 164 CG HIS D 517 11.354 10.291 33.632 1.00 1.94 \ ATOM 165 ND1 HIS D 517 12.639 10.737 33.406 1.00 1.94 \ ATOM 166 CD2 HIS D 517 10.562 10.962 32.764 1.00 1.94 \ ATOM 167 CE1 HIS D 517 12.623 11.636 32.437 1.00 1.94 \ ATOM 168 NE2 HIS D 517 11.376 11.791 32.030 1.00 1.94 \ ATOM 169 N LEU D 518 9.222 11.166 36.438 1.00 0.21 \ ATOM 170 CA LEU D 518 8.475 12.406 36.682 1.00 0.21 \ ATOM 171 C LEU D 518 8.933 13.119 37.952 1.00 0.21 \ ATOM 172 O LEU D 518 9.111 14.346 37.961 1.00 0.21 \ ATOM 173 CB LEU D 518 6.969 12.132 36.786 1.00 0.21 \ ATOM 174 CG LEU D 518 6.219 11.757 35.504 1.00 0.21 \ ATOM 175 CD1 LEU D 518 4.804 11.275 35.830 1.00 0.21 \ ATOM 176 CD2 LEU D 518 6.174 12.935 34.538 1.00 0.21 \ ATOM 177 N GLU D 519 9.119 12.350 39.020 1.00 -0.71 \ ATOM 178 CA GLU D 519 9.439 12.920 40.326 1.00 -0.71 \ ATOM 179 C GLU D 519 10.827 13.560 40.356 1.00 -0.71 \ ATOM 180 O GLU D 519 11.046 14.521 41.101 1.00 -0.71 \ ATOM 181 CB GLU D 519 9.332 11.860 41.433 1.00 -0.71 \ ATOM 182 CG GLU D 519 8.769 12.404 42.744 1.00 -0.71 \ ATOM 183 CD GLU D 519 7.245 12.470 42.745 1.00 -0.71 \ ATOM 184 OE1 GLU D 519 6.606 11.408 42.559 1.00 -0.71 \ ATOM 185 OE2 GLU D 519 6.690 13.578 42.937 1.00 -0.71 \ ATOM 186 N ARG D 520 11.751 13.056 39.535 1.00 -0.70 \ ATOM 187 CA ARG D 520 13.142 13.519 39.594 1.00 -0.70 \ ATOM 188 C ARG D 520 13.649 14.419 38.446 1.00 -0.70 \ ATOM 189 O ARG D 520 14.594 15.172 38.666 1.00 -0.70 \ ATOM 190 CB ARG D 520 14.077 12.322 39.792 1.00 -0.70 \ ATOM 191 CG ARG D 520 14.035 11.737 41.212 1.00 -0.70 \ ATOM 192 CD ARG D 520 15.039 12.411 42.162 1.00 -0.70 \ ATOM 193 NE ARG D 520 14.806 13.853 42.322 1.00 -0.70 \ ATOM 194 CZ ARG D 520 14.193 14.440 43.355 1.00 -0.70 \ ATOM 195 NH1 ARG D 520 13.725 13.734 44.384 1.00 -0.70 \ ATOM 196 NH2 ARG D 520 14.048 15.763 43.360 1.00 -0.70 \ ATOM 197 N HIS D 521 13.051 14.345 37.252 1.00 -0.57 \ ATOM 198 CA HIS D 521 13.466 15.191 36.113 0.50 -0.57 \ ATOM 199 C HIS D 521 12.472 16.328 35.865 1.00 -0.57 \ ATOM 200 O HIS D 521 12.813 17.322 35.204 1.00 -0.57 \ ATOM 201 CB HIS D 521 13.638 14.355 34.833 0.50 -0.57 \ ATOM 202 CG HIS D 521 14.399 15.051 33.740 0.50 -0.57 \ ATOM 203 ND1 HIS D 521 13.786 15.836 32.786 0.50 -0.57 \ ATOM 204 CD2 HIS D 521 15.721 15.066 33.442 0.50 -0.57 \ ATOM 205 CE1 HIS D 521 14.697 16.308 31.952 0.50 -0.57 \ ATOM 206 NE2 HIS D 521 15.879 15.856 32.328 0.50 -0.57 \ ATOM 207 N HIS D 522 11.251 16.186 36.392 1.00 0.57 \ ATOM 208 CA HIS D 522 10.213 17.216 36.263 1.00 0.57 \ ATOM 209 C HIS D 522 9.701 17.689 37.633 1.00 0.57 \ ATOM 210 O HIS D 522 8.620 17.298 38.084 1.00 0.57 \ ATOM 211 CB HIS D 522 9.060 16.712 35.390 1.00 0.57 \ ATOM 212 CG HIS D 522 9.486 16.284 34.019 1.00 0.57 \ ATOM 213 ND1 HIS D 522 10.120 17.129 33.133 1.00 0.57 \ ATOM 214 CD2 HIS D 522 9.366 15.096 33.382 1.00 0.57 \ ATOM 215 CE1 HIS D 522 10.376 16.478 32.011 1.00 0.57 \ ATOM 216 NE2 HIS D 522 9.930 15.242 32.137 1.00 0.57 \ ATOM 217 N LYS D 523 10.487 18.552 38.277 1.00 -0.68 \ ATOM 218 CA LYS D 523 10.156 19.075 39.605 1.00 -0.68 \ ATOM 219 C LYS D 523 11.095 20.215 39.999 1.00 -0.68 \ ATOM 220 O LYS D 523 10.674 21.210 40.594 1.00 -0.68 \ ATOM 221 CB LYS D 523 10.229 17.955 40.649 1.00 -0.68 \ """, "e3uk3D2_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e3uk3D2_csv", state=0, origin=1) cmd.zoom("e3uk3D2_csv", animate=-1)