cmd.read_pdbstr("""\ ATOM 1 N GLN B 17 -4.410 3.947 1.777 1.00 -0.76 \ ATOM 2 CA GLN B 17 -3.454 4.847 1.122 1.00 -0.76 \ ATOM 3 C GLN B 17 -4.125 5.738 0.071 1.00 -0.76 \ ATOM 4 O GLN B 17 -4.913 5.259 -0.731 1.00 -0.76 \ ATOM 5 CB GLN B 17 -2.406 4.019 0.389 1.00 -0.76 \ ATOM 6 CG GLN B 17 -1.586 3.150 1.275 1.00 -0.76 \ ATOM 7 CD GLN B 17 -0.314 3.819 1.678 1.00 -0.76 \ ATOM 8 OE1 GLN B 17 -0.233 4.432 2.747 1.00 -0.76 \ ATOM 9 NE2 GLN B 17 0.708 3.712 0.817 1.00 -0.76 \ ATOM 10 N VAL B 18 -3.783 7.021 0.053 1.00 1.07 \ ATOM 11 CA VAL B 18 -4.175 7.900 -1.045 1.00 1.07 \ ATOM 12 C VAL B 18 -2.963 8.682 -1.507 1.00 1.07 \ ATOM 13 O VAL B 18 -2.059 8.963 -0.727 1.00 1.07 \ ATOM 14 CB VAL B 18 -5.344 8.831 -0.657 1.00 1.07 \ ATOM 15 CG1 VAL B 18 -6.193 8.188 0.425 1.00 1.07 \ ATOM 16 CG2 VAL B 18 -4.856 10.188 -0.195 1.00 1.07 \ ATOM 17 N GLN B 19 -2.922 9.028 -2.774 1.00 -1.29 \ ATOM 18 CA GLN B 19 -1.767 9.724 -3.304 1.00 -1.29 \ ATOM 19 C GLN B 19 -1.870 11.245 -3.170 1.00 -1.29 \ ATOM 20 O GLN B 19 -2.907 11.840 -3.503 1.00 -1.29 \ ATOM 21 CB GLN B 19 -1.574 9.369 -4.772 1.00 -1.29 \ ATOM 22 CG GLN B 19 -0.185 9.610 -5.276 1.00 -1.29 \ ATOM 23 CD GLN B 19 -0.001 9.104 -6.669 1.00 -1.29 \ ATOM 24 OE1 GLN B 19 -0.965 8.717 -7.325 1.00 -1.29 \ ATOM 25 NE2 GLN B 19 1.225 9.110 -7.145 1.00 -1.29 \ ATOM 26 N CYS B 20 -0.795 11.863 -2.690 1.00 1.07 \ ATOM 27 CA CYS B 20 -0.717 13.311 -2.674 1.00 1.07 \ ATOM 28 C CYS B 20 -0.694 13.882 -4.105 1.00 1.07 \ ATOM 29 O CYS B 20 0.164 13.538 -4.919 1.00 1.07 \ ATOM 30 CB CYS B 20 0.474 13.810 -1.860 1.00 1.07 \ ATOM 31 SG CYS B 20 0.529 15.637 -1.816 1.00 1.07 \ ATOM 32 N PRO B 21 -1.665 14.763 -4.406 1.00 1.07 \ ATOM 33 CA PRO B 21 -1.782 15.425 -5.701 1.00 1.07 \ ATOM 34 C PRO B 21 -0.653 16.417 -6.012 1.00 1.07 \ ATOM 35 O PRO B 21 -0.506 16.814 -7.162 1.00 1.07 \ ATOM 36 CB PRO B 21 -3.124 16.168 -5.583 1.00 1.07 \ ATOM 37 CG PRO B 21 -3.321 16.380 -4.139 1.00 1.07 \ ATOM 38 CD PRO B 21 -2.778 15.122 -3.508 1.00 1.07 \ ATOM 39 N VAL B 22 0.136 16.800 -5.008 1.00 1.07 \ ATOM 40 CA VAL B 22 1.215 17.779 -5.188 1.00 1.07 \ ATOM 41 C VAL B 22 2.537 17.058 -5.371 1.00 1.07 \ ATOM 42 O VAL B 22 3.263 17.335 -6.304 1.00 1.07 \ ATOM 43 CB VAL B 22 1.298 18.795 -3.988 1.00 1.07 \ ATOM 44 CG1 VAL B 22 2.388 19.843 -4.212 1.00 1.07 \ ATOM 45 CG2 VAL B 22 -0.010 19.508 -3.786 1.00 1.07 \ ATOM 46 N CYS B 23 2.847 16.114 -4.485 1.00 1.07 \ ATOM 47 CA CYS B 23 4.174 15.476 -4.465 1.00 1.07 \ ATOM 48 C CYS B 23 4.128 14.014 -4.825 1.00 1.07 \ ATOM 49 O CYS B 23 5.176 13.358 -4.808 1.00 1.07 \ ATOM 50 CB CYS B 23 4.843 15.621 -3.102 1.00 1.07 \ ATOM 51 SG CYS B 23 4.126 14.600 -1.716 1.00 1.07 \ ATOM 52 N GLN B 24 2.920 13.509 -5.110 1.00 -1.46 \ ATOM 53 CA GLN B 24 2.706 12.131 -5.562 1.00 -1.46 \ ATOM 54 C GLN B 24 3.203 11.044 -4.635 1.00 -1.46 \ ATOM 55 O GLN B 24 3.500 9.951 -5.090 1.00 -1.46 \ ATOM 56 CB GLN B 24 3.276 11.896 -6.967 1.00 -1.46 \ ATOM 57 CG GLN B 24 2.419 12.498 -8.083 1.00 -1.46 \ ATOM 58 CD GLN B 24 2.683 13.981 -8.251 1.00 -1.46 \ ATOM 59 OE1 GLN B 24 3.840 14.399 -8.385 1.00 -1.46 \ ATOM 60 NE2 GLN B 24 1.626 14.785 -8.226 1.00 -1.46 \ ATOM 61 N GLN B 25 3.281 11.331 -3.348 1.00 -0.33 \ ATOM 62 CA GLN B 25 3.637 10.325 -2.361 1.00 -0.33 \ ATOM 63 C GLN B 25 2.381 9.693 -1.833 1.00 -0.33 \ ATOM 64 O GLN B 25 1.362 10.363 -1.695 1.00 -0.33 \ ATOM 65 CB GLN B 25 4.400 10.957 -1.189 1.00 -0.33 \ ATOM 66 CG GLN B 25 5.671 11.714 -1.557 1.00 -0.33 \ ATOM 67 CD GLN B 25 6.702 10.848 -2.270 1.00 -0.33 \ ATOM 68 OE1 GLN B 25 7.472 10.108 -1.632 1.00 -0.33 \ ATOM 69 NE2 GLN B 25 6.738 10.949 -3.601 1.00 -0.33 \ ATOM 70 N MET B 26 2.468 8.409 -1.517 1.00 -1.29 \ ATOM 71 CA MET B 26 1.398 7.687 -0.868 1.00 -1.29 \ ATOM 72 C MET B 26 1.433 7.909 0.637 1.00 -1.29 \ ATOM 73 O MET B 26 2.501 7.960 1.228 1.00 -1.29 \ ATOM 74 CB MET B 26 1.542 6.197 -1.162 1.00 -1.29 \ ATOM 75 CG MET B 26 1.607 5.848 -2.639 1.00 -1.29 \ ATOM 76 SD MET B 26 0.155 6.388 -3.606 1.00 -1.29 \ ATOM 77 CE MET B 26 -1.180 5.528 -2.764 1.00 -1.29 \ ATOM 78 N MET B 27 0.261 8.044 1.257 1.00 -0.31 \ ATOM 79 CA MET B 27 0.135 8.132 2.712 1.00 -0.31 \ ATOM 80 C MET B 27 -1.278 7.790 3.174 1.00 -0.31 \ ATOM 81 O MET B 27 -2.208 7.765 2.356 1.00 -0.31 \ ATOM 82 CB MET B 27 0.446 9.537 3.176 1.00 -0.31 \ ATOM 83 CG MET B 27 -0.628 10.508 2.797 1.00 -0.31 \ ATOM 84 SD MET B 27 0.026 12.170 2.849 1.00 -0.31 \ ATOM 85 CE MET B 27 1.358 11.950 1.662 1.00 -0.31 \ ATOM 86 N PRO B 28 -1.462 7.563 4.490 1.00 -0.21 \ ATOM 87 CA PRO B 28 -2.809 7.253 4.888 1.00 -0.21 \ ATOM 88 C PRO B 28 -3.769 8.431 4.657 1.00 -0.21 \ ATOM 89 O PRO B 28 -3.389 9.612 4.767 1.00 -0.21 \ ATOM 90 CB PRO B 28 -2.669 6.915 6.389 1.00 -0.21 \ ATOM 91 CG PRO B 28 -1.244 6.587 6.582 1.00 -0.21 \ ATOM 92 CD PRO B 28 -0.511 7.437 5.614 1.00 -0.21 \ ATOM 93 N ALA B 29 -5.008 8.076 4.329 1.00 -0.28 \ ATOM 94 CA ALA B 29 -6.076 9.008 4.099 1.00 -0.28 \ ATOM 95 C ALA B 29 -6.312 9.874 5.304 1.00 -0.28 \ ATOM 96 O ALA B 29 -6.702 11.024 5.158 1.00 -0.28 \ ATOM 97 CB ALA B 29 -7.309 8.255 3.790 1.00 -0.28 \ ATOM 98 N ALA B 30 -6.075 9.347 6.502 1.00 -1.85 \ ATOM 99 CA ALA B 30 -6.291 10.137 7.711 1.00 -1.85 \ ATOM 100 C ALA B 30 -5.311 11.306 7.760 1.00 -1.85 \ ATOM 101 O ALA B 30 -5.552 12.302 8.415 1.00 -1.85 \ ATOM 102 CB ALA B 30 -6.145 9.277 8.955 1.00 -1.85 \ ATOM 103 N HIS B 31 -4.211 11.206 7.044 1.00 -0.99 \ ATOM 104 CA HIS B 31 -3.196 12.228 7.212 1.00 -0.99 \ ATOM 105 C HIS B 31 -3.002 13.174 6.043 1.00 -0.99 \ ATOM 106 O HIS B 31 -2.209 14.112 6.126 1.00 -0.99 \ ATOM 107 CB HIS B 31 -1.881 11.577 7.633 1.00 -0.99 \ ATOM 108 CG HIS B 31 -2.006 10.760 8.878 1.00 -0.99 \ ATOM 109 ND1 HIS B 31 -2.130 11.331 10.126 1.00 -0.99 \ ATOM 110 CD2 HIS B 31 -2.038 9.420 9.068 1.00 -0.99 \ ATOM 111 CE1 HIS B 31 -2.230 10.378 11.032 1.00 -0.99 \ ATOM 112 NE2 HIS B 31 -2.167 9.210 10.415 1.00 -0.99 \ ATOM 113 N ILE B 32 -3.744 12.944 4.974 1.00 0.32 \ ATOM 114 CA ILE B 32 -3.604 13.772 3.777 1.00 0.32 \ ATOM 115 C ILE B 32 -4.039 15.236 4.049 1.00 0.32 \ ATOM 116 O ILE B 32 -3.403 16.178 3.579 1.00 0.32 \ ATOM 117 CB ILE B 32 -4.269 13.105 2.566 1.00 0.32 \ ATOM 118 CG1 ILE B 32 -4.030 13.905 1.296 1.00 0.32 \ ATOM 119 CG2 ILE B 32 -5.717 12.877 2.795 1.00 0.32 \ ATOM 120 CD1 ILE B 32 -2.976 13.303 0.458 1.00 0.32 \ ATOM 121 N ASN B 33 -5.028 15.427 4.904 1.00 1.07 \ ATOM 122 CA ASN B 33 -5.446 16.775 5.197 1.00 1.07 \ ATOM 123 C ASN B 33 -4.335 17.602 5.845 1.00 1.07 \ ATOM 124 O ASN B 33 -3.999 18.687 5.354 1.00 1.07 \ ATOM 125 CB ASN B 33 -6.700 16.758 6.050 1.00 1.07 \ ATOM 126 CG ASN B 33 -7.698 17.756 5.597 1.00 1.07 \ ATOM 127 OD1 ASN B 33 -7.465 18.492 4.634 1.00 1.07 \ ATOM 128 ND2 ASN B 33 -8.834 17.801 6.285 1.00 1.07 \ ATOM 129 N SER B 34 -3.747 17.067 6.910 1.00 -1.01 \ ATOM 130 CA SER B 34 -2.624 17.665 7.619 1.00 -1.01 \ ATOM 131 C SER B 34 -1.421 17.904 6.718 1.00 -1.01 \ ATOM 132 O SER B 34 -0.688 18.858 6.905 1.00 -1.01 \ ATOM 133 CB SER B 34 -2.200 16.732 8.756 1.00 -1.01 \ ATOM 134 OG SER B 34 -3.115 16.847 9.841 1.00 -1.01 \ ATOM 135 N HIS B 35 -1.249 17.025 5.734 1.00 1.07 \ ATOM 136 CA HIS B 35 -0.071 16.964 4.900 1.00 1.07 \ ATOM 137 C HIS B 35 -0.052 18.109 3.907 1.00 1.07 \ ATOM 138 O HIS B 35 1.012 18.652 3.590 1.00 1.07 \ ATOM 139 CB HIS B 35 -0.053 15.607 4.192 1.00 1.07 \ ATOM 140 CG HIS B 35 0.927 15.507 3.066 1.00 1.07 \ ATOM 141 ND1 HIS B 35 2.280 15.367 3.273 1.00 1.07 \ ATOM 142 CD2 HIS B 35 0.744 15.490 1.727 1.00 1.07 \ ATOM 143 CE1 HIS B 35 2.894 15.277 2.112 1.00 1.07 \ ATOM 144 NE2 HIS B 35 1.986 15.374 1.152 1.00 1.07 \ ATOM 145 N LEU B 36 -1.224 18.486 3.418 1.00 1.07 \ ATOM 146 CA LEU B 36 -1.309 19.594 2.469 1.00 1.07 \ ATOM 147 C LEU B 36 -1.476 20.900 3.228 1.00 1.07 \ ATOM 148 O LEU B 36 -2.125 20.925 4.247 1.00 1.07 \ ATOM 149 CB LEU B 36 -2.468 19.347 1.521 1.00 1.07 \ ATOM 150 CG LEU B 36 -2.165 18.084 0.737 1.00 1.07 \ ATOM 151 CD1 LEU B 36 -3.466 17.431 0.382 1.00 1.07 \ ATOM 152 CD2 LEU B 36 -1.342 18.421 -0.546 1.00 1.07 \ ATOM 153 N ASP B 37 -0.866 21.982 2.794 1.00 1.07 \ ATOM 154 CA ASP B 37 -1.131 23.246 3.502 1.00 1.07 \ ATOM 155 C ASP B 37 -1.980 24.174 2.648 1.00 1.07 \ ATOM 156 O ASP B 37 -1.895 24.130 1.416 1.00 1.07 \ ATOM 157 CB ASP B 37 0.163 23.928 3.988 1.00 1.07 \ ATOM 158 CG ASP B 37 0.814 23.176 5.144 1.00 1.07 \ ATOM 159 OD1 ASP B 37 0.309 23.184 6.280 1.00 1.07 \ ATOM 160 OD2 ASP B 37 1.841 22.527 4.929 1.00 1.07 \ ATOM 161 N ARG B 38 -2.813 24.982 3.301 1.00 -1.27 \ ATOM 162 CA ARG B 38 -3.634 25.953 2.606 1.00 -1.27 \ ATOM 163 C ARG B 38 -2.972 27.321 2.561 1.00 -1.27 \ ATOM 164 O ARG B 38 -1.974 27.548 3.231 1.00 -1.27 \ ATOM 165 CB ARG B 38 -5.012 26.046 3.275 1.00 -1.27 \ ATOM 166 CG ARG B 38 -5.931 24.846 2.969 1.00 -1.27 \ ATOM 167 CD ARG B 38 -7.373 25.120 3.489 1.00 -1.27 \ ATOM 168 NE ARG B 38 -7.881 23.987 4.265 1.00 -1.27 \ ATOM 169 CZ ARG B 38 -8.762 23.079 3.838 1.00 -1.27 \ ATOM 170 NH1 ARG B 38 -9.127 22.082 4.657 1.00 -1.27 \ ATOM 171 NH2 ARG B 38 -9.286 23.163 2.613 1.00 -1.27 \ ATOM 172 N CYS B 39 -3.514 28.220 1.752 1.00 1.07 \ ATOM 173 CA CYS B 39 -3.032 29.590 1.711 1.00 1.07 \ ATOM 174 C CYS B 39 -3.642 30.280 2.899 1.00 1.07 \ ATOM 175 O CYS B 39 -4.793 29.989 3.243 1.00 1.07 \ ATOM 176 CB CYS B 39 -3.469 30.290 0.437 1.00 1.07 \ ATOM 177 SG CYS B 39 -2.973 29.440 -1.060 1.00 1.07 \ ATOM 178 N LEU B 40 -2.883 31.172 3.535 1.00 1.07 \ ATOM 179 CA LEU B 40 -3.365 31.893 4.720 1.00 1.07 \ ATOM 180 C LEU B 40 -3.946 33.258 4.385 1.00 1.07 \ ATOM 181 O LEU B 40 -5.098 33.533 4.708 1.00 1.07 \ ATOM 182 CB LEU B 40 -2.268 32.036 5.782 1.00 1.07 \ ATOM 183 CG LEU B 40 -1.816 30.680 6.311 1.00 1.07 \ ATOM 184 CD1 LEU B 40 -0.929 30.853 7.466 1.00 1.07 \ ATOM 185 CD2 LEU B 40 -3.003 29.801 6.687 1.00 1.07 \ ATOM 186 OXT LEU B 40 -3.272 34.114 3.799 1.00 1.07 \ """, "e3vhsB1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e3vhsB1_csv", state=0, origin=1) cmd.zoom("e3vhsB1_csv", animate=-1)