cmd.read_pdbstr("""\ ATOM 1 N MET D 1 29.426 -33.151 23.060 1.00 3.32 \ ATOM 2 CA MET D 1 28.144 -33.887 23.243 1.00 3.32 \ ATOM 3 C MET D 1 27.133 -32.942 23.798 1.00 3.32 \ ATOM 4 O MET D 1 27.305 -32.377 24.921 1.00 3.32 \ ATOM 5 CB MET D 1 28.200 -35.175 24.077 1.00 3.32 \ ATOM 6 CG MET D 1 27.015 -35.532 25.055 1.00 3.32 \ ATOM 7 SD MET D 1 27.288 -37.246 25.779 1.00 3.32 \ ATOM 8 CE MET D 1 29.026 -37.117 26.250 1.00 3.32 \ ATOM 9 N ILE D 2 26.059 -32.746 23.116 1.00 -0.91 \ ATOM 10 CA ILE D 2 25.037 -31.780 23.426 1.00 -0.91 \ ATOM 11 C ILE D 2 23.819 -32.485 23.946 1.00 -0.91 \ ATOM 12 O ILE D 2 23.320 -33.425 23.304 1.00 -0.91 \ ATOM 13 CB ILE D 2 24.723 -30.934 22.206 1.00 -0.91 \ ATOM 14 CG1 ILE D 2 25.954 -30.199 21.728 1.00 -0.91 \ ATOM 15 CG2 ILE D 2 23.530 -30.071 22.425 1.00 -0.91 \ ATOM 16 CD1 ILE D 2 26.375 -29.190 22.661 1.00 -0.91 \ ATOM 17 N ARG D 3 23.316 -32.084 25.116 1.00 -0.60 \ ATOM 18 CA ARG D 3 22.163 -32.694 25.735 1.00 -0.60 \ ATOM 19 C ARG D 3 20.897 -31.849 25.497 1.00 -0.60 \ ATOM 20 O ARG D 3 20.985 -30.605 25.393 1.00 -0.60 \ ATOM 21 CB ARG D 3 22.405 -32.659 27.260 1.00 -0.60 \ ATOM 22 CG ARG D 3 23.553 -33.485 27.743 1.00 -0.60 \ ATOM 23 CD ARG D 3 23.239 -34.907 27.926 1.00 -0.60 \ ATOM 24 NE ARG D 3 24.310 -35.665 28.525 1.00 -0.60 \ ATOM 25 CZ ARG D 3 24.230 -36.898 28.999 1.00 -0.60 \ ATOM 26 NH1 ARG D 3 23.172 -37.639 28.774 1.00 -0.60 \ ATOM 27 NH2 ARG D 3 25.263 -37.375 29.698 1.00 -0.60 \ ATOM 28 N THR D 4 19.740 -32.520 25.474 1.00 -1.27 \ ATOM 29 CA THR D 4 18.459 -31.859 25.426 1.00 -1.27 \ ATOM 30 C THR D 4 17.875 -31.900 26.849 1.00 -1.27 \ ATOM 31 O THR D 4 17.698 -33.012 27.356 1.00 -1.27 \ ATOM 32 CB THR D 4 17.481 -32.532 24.454 1.00 -1.27 \ ATOM 33 OG1 THR D 4 18.117 -32.531 23.139 1.00 -1.27 \ ATOM 34 CG2 THR D 4 16.156 -31.866 24.405 1.00 -1.27 \ ATOM 35 N MET D 5 17.614 -30.754 27.438 1.00 -0.13 \ ATOM 36 CA MET D 5 17.240 -30.593 28.850 1.00 -0.13 \ ATOM 37 C MET D 5 15.939 -29.904 28.961 1.00 -0.13 \ ATOM 38 O MET D 5 15.625 -28.962 28.192 1.00 -0.13 \ ATOM 39 CB MET D 5 18.304 -29.792 29.565 1.00 -0.13 \ ATOM 40 CG MET D 5 19.684 -30.363 29.452 1.00 -0.13 \ ATOM 41 SD MET D 5 19.869 -32.061 30.158 1.00 -0.13 \ ATOM 42 CE MET D 5 19.637 -31.722 31.900 1.00 -0.13 \ ATOM 43 N LEU D 6 15.134 -30.234 29.961 1.00 -0.07 \ ATOM 44 CA LEU D 6 13.933 -29.490 30.276 1.00 -0.07 \ ATOM 45 C LEU D 6 14.290 -28.049 30.585 1.00 -0.07 \ ATOM 46 O LEU D 6 15.080 -27.798 31.543 1.00 -0.07 \ ATOM 47 CB LEU D 6 13.170 -30.077 31.436 1.00 -0.07 \ ATOM 48 CG LEU D 6 11.897 -29.371 31.876 1.00 -0.07 \ ATOM 49 CD1 LEU D 6 10.797 -29.579 30.846 1.00 -0.07 \ ATOM 50 CD2 LEU D 6 11.404 -29.934 33.211 1.00 -0.07 \ ATOM 51 N GLN D 7 13.768 -27.062 29.885 1.00 -0.88 \ ATOM 52 CA GLN D 7 14.022 -25.673 30.115 1.00 -0.88 \ ATOM 53 C GLN D 7 13.060 -25.175 31.203 1.00 -0.88 \ ATOM 54 O GLN D 7 13.468 -24.407 32.128 1.00 -0.88 \ ATOM 55 CB GLN D 7 13.816 -24.842 28.858 1.00 -0.88 \ ATOM 56 CG GLN D 7 14.184 -23.409 28.974 1.00 -0.88 \ ATOM 57 CD GLN D 7 13.245 -22.525 29.725 1.00 -0.88 \ ATOM 58 OE1 GLN D 7 13.697 -21.607 30.461 1.00 -0.88 \ ATOM 59 NE2 GLN D 7 11.933 -22.697 29.520 1.00 -0.88 \ ATOM 60 N GLY D 8 11.820 -25.534 31.124 1.00 0.59 \ ATOM 61 CA GLY D 8 10.789 -25.080 32.056 1.00 0.59 \ ATOM 62 C GLY D 8 9.477 -25.682 31.785 1.00 0.59 \ ATOM 63 O GLY D 8 9.265 -26.326 30.707 1.00 0.59 \ ATOM 64 N LYS D 9 8.555 -25.593 32.733 1.00 2.08 \ ATOM 65 CA LYS D 9 7.266 -26.152 32.587 1.00 2.08 \ ATOM 66 C LYS D 9 6.209 -25.448 33.365 1.00 2.08 \ ATOM 67 O LYS D 9 6.520 -24.863 34.450 1.00 2.08 \ ATOM 68 CB LYS D 9 7.264 -27.579 32.945 1.00 2.08 \ ATOM 69 CG LYS D 9 7.282 -27.964 34.238 1.00 2.08 \ ATOM 70 CD LYS D 9 7.048 -29.506 34.421 1.00 2.08 \ ATOM 71 CE LYS D 9 7.133 -29.824 35.879 1.00 2.08 \ ATOM 72 NZ LYS D 9 6.790 -31.279 36.260 1.00 2.08 \ ATOM 73 N LEU D 10 4.990 -25.474 32.878 1.00 1.03 \ ATOM 74 CA LEU D 10 3.769 -25.033 33.543 1.00 1.03 \ ATOM 75 C LEU D 10 3.091 -26.315 33.921 1.00 1.03 \ ATOM 76 O LEU D 10 2.609 -27.098 33.126 1.00 1.03 \ ATOM 77 CB LEU D 10 2.900 -24.198 32.613 1.00 1.03 \ ATOM 78 CG LEU D 10 3.604 -22.973 32.086 1.00 1.03 \ ATOM 79 CD1 LEU D 10 2.776 -22.215 31.049 1.00 1.03 \ ATOM 80 CD2 LEU D 10 3.973 -21.957 33.168 1.00 1.03 \ ATOM 81 N HIS D 11 3.013 -26.581 35.239 1.00 0.21 \ ATOM 82 CA HIS D 11 2.489 -27.818 35.777 1.00 0.21 \ ATOM 83 C HIS D 11 1.034 -27.745 36.202 1.00 0.21 \ ATOM 84 O HIS D 11 0.696 -27.036 37.154 1.00 0.21 \ ATOM 85 CB HIS D 11 3.359 -28.219 36.957 1.00 0.21 \ ATOM 86 CG HIS D 11 3.042 -29.590 37.442 1.00 0.21 \ ATOM 87 ND1 HIS D 11 3.503 -30.727 36.789 1.00 0.21 \ ATOM 88 CD2 HIS D 11 2.241 -30.013 38.439 1.00 0.21 \ ATOM 89 CE1 HIS D 11 3.039 -31.831 37.413 1.00 0.21 \ ATOM 90 NE2 HIS D 11 2.288 -31.438 38.434 1.00 0.21 \ ATOM 91 N ARG D 12 0.149 -28.449 35.478 1.00 -0.88 \ ATOM 92 CA ARG D 12 -1.247 -28.551 35.780 0.50 -0.88 \ ATOM 93 C ARG D 12 -2.013 -27.268 35.603 1.00 -0.88 \ ATOM 94 O ARG D 12 -2.854 -26.859 36.437 1.00 -0.88 \ ATOM 95 CB ARG D 12 -1.476 -29.187 37.138 0.50 -0.88 \ ATOM 96 CG ARG D 12 -1.201 -30.672 37.120 0.50 -0.88 \ ATOM 97 CD ARG D 12 -1.358 -31.290 38.486 0.50 -0.88 \ ATOM 98 NE ARG D 12 -2.002 -32.581 38.375 0.50 -0.88 \ ATOM 99 CZ ARG D 12 -3.308 -32.772 38.514 0.50 -0.88 \ ATOM 100 NH1 ARG D 12 -4.111 -31.743 38.778 0.50 -0.88 \ ATOM 101 NH2 ARG D 12 -3.808 -33.984 38.402 0.50 -0.88 \ ATOM 102 N VAL D 13 -1.760 -26.611 34.500 1.00 0.19 \ ATOM 103 CA VAL D 13 -2.616 -25.533 34.066 1.00 0.19 \ ATOM 104 C VAL D 13 -3.884 -26.118 33.439 1.00 0.19 \ ATOM 105 O VAL D 13 -3.868 -27.283 32.971 1.00 0.19 \ ATOM 106 CB VAL D 13 -1.970 -24.549 33.102 1.00 0.19 \ ATOM 107 CG1 VAL D 13 -0.945 -23.784 33.811 1.00 0.19 \ ATOM 108 CG2 VAL D 13 -1.410 -25.185 31.836 1.00 0.19 \ ATOM 109 N LYS D 14 -4.985 -25.380 33.398 1.00 -0.84 \ ATOM 110 CA LYS D 14 -6.217 -25.802 32.744 1.00 -0.84 \ ATOM 111 C LYS D 14 -6.429 -25.000 31.478 1.00 -0.84 \ ATOM 112 O LYS D 14 -6.229 -23.793 31.403 1.00 -0.84 \ ATOM 113 CB LYS D 14 -7.397 -25.568 33.733 1.00 -0.84 \ ATOM 114 CG LYS D 14 -7.422 -26.605 34.878 1.00 -0.84 \ ATOM 115 CD LYS D 14 -8.636 -26.472 35.779 1.00 -0.84 \ ATOM 116 CE LYS D 14 -8.467 -27.309 37.068 1.00 -0.84 \ ATOM 117 NZ LYS D 14 -7.402 -26.867 38.079 1.00 -0.84 \ ATOM 118 N VAL D 15 -6.868 -25.743 30.472 1.00 0.67 \ ATOM 119 CA VAL D 15 -7.236 -25.106 29.192 1.00 0.67 \ ATOM 120 C VAL D 15 -8.469 -24.254 29.424 1.00 0.67 \ ATOM 121 O VAL D 15 -9.464 -24.748 29.991 1.00 0.67 \ ATOM 122 CB VAL D 15 -7.431 -26.174 28.098 1.00 0.67 \ ATOM 123 CG1 VAL D 15 -7.998 -25.533 26.812 1.00 0.67 \ ATOM 124 CG2 VAL D 15 -6.139 -26.988 27.854 1.00 0.67 \ ATOM 125 N THR D 16 -8.405 -23.015 28.989 1.00 0.37 \ ATOM 126 CA THR D 16 -9.501 -22.046 29.221 1.00 0.37 \ ATOM 127 C THR D 16 -10.322 -21.774 27.968 1.00 0.37 \ ATOM 128 O THR D 16 -11.453 -21.301 28.027 1.00 0.37 \ ATOM 129 CB THR D 16 -9.008 -20.766 29.833 1.00 0.37 \ ATOM 130 OG1 THR D 16 -8.167 -20.062 28.927 1.00 0.37 \ ATOM 131 CG2 THR D 16 -8.199 -21.060 31.105 1.00 0.37 \ ATOM 132 N HIS D 17 -9.707 -22.046 26.786 1.00 -0.60 \ ATOM 133 CA HIS D 17 -10.365 -21.762 25.519 1.00 -0.60 \ ATOM 134 C HIS D 17 -9.823 -22.693 24.450 1.00 -0.60 \ ATOM 135 O HIS D 17 -8.652 -23.089 24.521 1.00 -0.60 \ ATOM 136 CB HIS D 17 -10.078 -20.288 25.138 1.00 -0.60 \ ATOM 137 CG HIS D 17 -10.820 -19.794 23.948 1.00 -0.60 \ ATOM 138 ND1 HIS D 17 -12.142 -19.412 24.009 1.00 -0.60 \ ATOM 139 CD2 HIS D 17 -10.434 -19.618 22.647 1.00 -0.60 \ ATOM 140 CE1 HIS D 17 -12.545 -19.014 22.795 1.00 -0.60 \ ATOM 141 NE2 HIS D 17 -11.517 -19.155 21.956 1.00 -0.60 \ ATOM 142 N ALA D 18 -10.671 -23.075 23.472 1.00 -0.27 \ ATOM 143 CA ALA D 18 -10.221 -23.791 22.313 1.00 -0.27 \ ATOM 144 C ALA D 18 -10.788 -23.107 21.027 1.00 -0.27 \ ATOM 145 O ALA D 18 -11.854 -22.550 21.047 1.00 -0.27 \ ATOM 146 CB ALA D 18 -10.607 -25.226 22.415 1.00 -0.27 \ ATOM 147 N ASP D 19 -9.932 -22.901 20.049 1.00 -0.77 \ ATOM 148 CA ASP D 19 -10.270 -22.080 18.840 1.00 -0.77 \ ATOM 149 C ASP D 19 -9.710 -22.781 17.618 1.00 -0.77 \ ATOM 150 O ASP D 19 -8.579 -22.409 17.120 1.00 -0.77 \ ATOM 151 CB ASP D 19 -9.673 -20.619 18.985 1.00 -0.77 \ ATOM 152 CG ASP D 19 -10.035 -19.660 17.783 1.00 -0.77 \ ATOM 153 OD1 ASP D 19 -10.766 -20.071 16.823 1.00 -0.77 \ ATOM 154 OD2 ASP D 19 -9.568 -18.477 17.775 1.00 -0.77 \ ATOM 155 N LEU D 20 -10.464 -23.728 17.091 1.00 -0.09 \ ATOM 156 CA LEU D 20 -10.024 -24.419 15.865 1.00 -0.09 \ ATOM 157 C LEU D 20 -9.769 -23.432 14.701 1.00 -0.09 \ ATOM 158 O LEU D 20 -8.822 -23.643 13.854 1.00 -0.09 \ ATOM 159 CB LEU D 20 -11.095 -25.467 15.485 1.00 -0.09 \ ATOM 160 CG LEU D 20 -10.922 -26.474 14.400 1.00 -0.09 \ ATOM 161 CD1 LEU D 20 -9.778 -27.403 14.804 1.00 -0.09 \ ATOM 162 CD2 LEU D 20 -12.267 -27.212 14.238 1.00 -0.09 \ ATOM 163 N HIS D 21 -10.544 -22.378 14.644 1.00 -0.73 \ ATOM 164 CA HIS D 21 -10.525 -21.479 13.443 1.00 -0.73 \ ATOM 165 C HIS D 21 -9.573 -20.306 13.585 1.00 -0.73 \ ATOM 166 O HIS D 21 -9.582 -19.345 12.802 1.00 -0.73 \ ATOM 167 CB HIS D 21 -11.924 -21.059 13.016 1.00 -0.73 \ ATOM 168 CG HIS D 21 -12.848 -22.242 12.785 1.00 -0.73 \ ATOM 169 ND1 HIS D 21 -13.830 -22.613 13.666 1.00 -0.73 \ ATOM 170 CD2 HIS D 21 -12.889 -23.178 11.740 1.00 -0.73 \ ATOM 171 CE1 HIS D 21 -14.467 -23.721 13.192 1.00 -0.73 \ ATOM 172 NE2 HIS D 21 -13.887 -24.065 12.017 1.00 -0.73 \ ATOM 173 N TYR D 22 -8.658 -20.401 14.528 1.00 1.80 \ ATOM 174 CA TYR D 22 -7.695 -19.333 14.748 1.00 1.80 \ ATOM 175 C TYR D 22 -6.939 -18.892 13.472 1.00 1.80 \ ATOM 176 O TYR D 22 -6.477 -19.745 12.681 1.00 1.80 \ ATOM 177 CB TYR D 22 -6.663 -19.804 15.759 1.00 1.80 \ ATOM 178 CG TYR D 22 -5.699 -18.708 16.217 1.00 1.80 \ ATOM 179 CD1 TYR D 22 -6.167 -17.586 16.979 1.00 1.80 \ ATOM 180 CD2 TYR D 22 -4.296 -18.792 15.919 1.00 1.80 \ ATOM 181 CE1 TYR D 22 -5.292 -16.611 17.414 1.00 1.80 \ ATOM 182 CE2 TYR D 22 -3.415 -17.807 16.392 1.00 1.80 \ ATOM 183 CZ TYR D 22 -3.928 -16.719 17.121 1.00 1.80 \ ATOM 184 OH TYR D 22 -3.058 -15.743 17.590 1.00 1.80 \ ATOM 185 N GLU D 23 -6.796 -17.565 13.314 1.00 -0.78 \ ATOM 186 CA GLU D 23 -6.142 -16.992 12.136 1.00 -0.78 \ ATOM 187 C GLU D 23 -4.695 -16.516 12.212 1.00 -0.78 \ ATOM 188 O GLU D 23 -4.152 -16.067 11.172 1.00 -0.78 \ ATOM 189 CB GLU D 23 -7.040 -15.882 11.576 1.00 -0.78 \ ATOM 190 CG GLU D 23 -6.762 -15.425 10.144 1.00 -0.78 \ ATOM 191 CD GLU D 23 -6.538 -16.556 9.086 1.00 -0.78 \ ATOM 192 OE1 GLU D 23 -7.036 -17.714 9.213 1.00 -0.78 \ ATOM 193 OE2 GLU D 23 -5.831 -16.264 8.085 1.00 -0.78 \ ATOM 194 N GLY D 24 -4.020 -16.655 13.323 1.00 2.63 \ ATOM 195 CA GLY D 24 -2.766 -15.852 13.609 1.00 2.63 \ ATOM 196 C GLY D 24 -1.400 -16.423 13.219 1.00 2.63 \ ATOM 197 O GLY D 24 -1.149 -17.606 13.169 1.00 2.63 \ ATOM 198 OXT GLY D 24 -0.452 -15.726 12.881 1.00 2.63 \ ATOM 199 N GLU D1116 -2.648 -25.446 13.960 0.60 2.07 \ ATOM 200 CA GLU D1116 -1.605 -25.089 14.820 0.60 2.07 \ ATOM 201 C GLU D1116 -1.602 -26.247 15.813 0.60 2.07 \ ATOM 202 O GLU D1116 -2.099 -26.887 15.530 0.60 2.07 \ ATOM 203 CB GLU D1116 -1.941 -23.742 15.296 0.60 2.07 \ ATOM 204 CG GLU D1116 -0.748 -22.964 14.781 0.60 2.07 \ ATOM 205 CD GLU D1116 -1.296 -21.732 14.234 0.60 2.07 \ ATOM 206 OE1 GLU D1116 -0.932 -21.412 13.109 0.60 2.07 \ ATOM 207 OE2 GLU D1116 -2.066 -21.144 14.881 0.60 2.07 \ ATOM 208 OXT GLU D1116 -0.968 -26.535 16.753 0.60 2.07 \ """, "e4aonD1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e4aonD1_csv", state=0, origin=1) cmd.zoom("e4aonD1_csv", animate=-1)