cmd.read_pdbstr("""\ ATOM 1 N PHE D 1 -21.693 1.146 -1.875 1.00 -1.00 \ ATOM 2 CA PHE D 1 -20.253 1.219 -1.483 1.00 -1.00 \ ATOM 3 C PHE D 1 -20.104 1.090 0.021 1.00 -1.00 \ ATOM 4 O PHE D 1 -21.036 1.357 0.790 1.00 -1.00 \ ATOM 5 CB PHE D 1 -19.633 2.540 -1.947 1.00 -1.00 \ ATOM 6 CG PHE D 1 -19.787 2.796 -3.414 1.00 -1.00 \ ATOM 7 CD1 PHE D 1 -19.463 1.806 -4.333 1.00 -1.00 \ ATOM 8 CD2 PHE D 1 -20.211 4.029 -3.880 1.00 -1.00 \ ATOM 9 CE1 PHE D 1 -19.582 2.038 -5.708 1.00 -1.00 \ ATOM 10 CE2 PHE D 1 -20.346 4.276 -5.262 1.00 -1.00 \ ATOM 11 CZ PHE D 1 -20.054 3.264 -6.168 1.00 -1.00 \ ATOM 12 N VAL D 2 -18.924 0.663 0.430 1.00 -1.00 \ ATOM 13 CA VAL D 2 -18.601 0.429 1.836 1.00 -1.00 \ ATOM 14 C VAL D 2 -17.741 1.583 2.342 1.00 -1.00 \ ATOM 15 O VAL D 2 -17.079 2.266 1.558 1.00 -1.00 \ ATOM 16 CB VAL D 2 -17.880 -0.944 2.049 1.00 -1.00 \ ATOM 17 CG1 VAL D 2 -18.854 -2.141 1.763 1.00 -1.00 \ ATOM 18 CG2 VAL D 2 -16.583 -1.067 1.209 1.00 -1.00 \ ATOM 19 N ASN D 3 -17.761 1.791 3.652 1.00 -0.48 \ ATOM 20 CA ASN D 3 -16.826 2.704 4.296 1.00 -0.48 \ ATOM 21 C ASN D 3 -15.400 2.209 4.214 1.00 -0.48 \ ATOM 22 O ASN D 3 -15.157 0.999 4.041 1.00 -0.48 \ ATOM 23 CB ASN D 3 -17.237 2.960 5.730 1.00 -0.48 \ ATOM 24 CG ASN D 3 -18.538 3.702 5.821 1.00 -0.48 \ ATOM 25 OD1 ASN D 3 -19.429 3.326 6.599 1.00 -0.48 \ ATOM 26 ND2 ASN D 3 -18.689 4.746 5.006 1.00 -0.48 \ ATOM 27 N GLN D 4 -14.479 3.154 4.331 1.00 0.23 \ ATOM 28 CA GLN D 4 -13.083 2.971 3.969 1.00 0.23 \ ATOM 29 C GLN D 4 -12.196 3.303 5.135 1.00 0.23 \ ATOM 30 O GLN D 4 -12.452 4.262 5.857 1.00 0.23 \ ATOM 31 CB GLN D 4 -12.759 3.983 2.863 1.00 0.23 \ ATOM 32 CG GLN D 4 -13.660 3.832 1.659 1.00 0.23 \ ATOM 33 CD GLN D 4 -13.325 2.577 0.874 1.00 0.23 \ ATOM 34 OE1 GLN D 4 -12.173 2.360 0.513 1.00 0.23 \ ATOM 35 NE2 GLN D 4 -14.335 1.756 0.595 1.00 0.23 \ ATOM 36 N HIS D 5 -11.106 2.562 5.283 1.00 -0.03 \ ATOM 37 CA HIS D 5 -10.056 2.957 6.221 1.00 -0.03 \ ATOM 38 C HIS D 5 -8.780 3.098 5.403 1.00 -0.03 \ ATOM 39 O HIS D 5 -8.223 2.109 4.917 1.00 -0.03 \ ATOM 40 CB HIS D 5 -9.896 1.886 7.299 1.00 -0.03 \ ATOM 41 CG HIS D 5 -8.897 2.237 8.345 1.00 -0.03 \ ATOM 42 ND1 HIS D 5 -8.337 1.286 9.176 1.00 -0.03 \ ATOM 43 CD2 HIS D 5 -8.398 3.429 8.743 1.00 -0.03 \ ATOM 44 CE1 HIS D 5 -7.517 1.879 10.026 1.00 -0.03 \ ATOM 45 NE2 HIS D 5 -7.517 3.177 9.767 1.00 -0.03 \ ATOM 46 N LEU D 6 -8.352 4.342 5.210 1.00 1.17 \ ATOM 47 CA LEU D 6 -7.327 4.656 4.231 1.00 1.17 \ ATOM 48 C LEU D 6 -6.256 5.570 4.790 1.00 1.17 \ ATOM 49 O LEU D 6 -6.534 6.698 5.212 1.00 1.17 \ ATOM 50 CB LEU D 6 -7.968 5.306 2.991 1.00 1.17 \ ATOM 51 CG LEU D 6 -9.048 4.556 2.230 1.00 1.17 \ ATOM 52 CD1 LEU D 6 -9.744 5.538 1.315 1.00 1.17 \ ATOM 53 CD2 LEU D 6 -8.449 3.428 1.393 1.00 1.17 \ ATOM 54 N CYS D 7 -5.024 5.071 4.773 1.00 1.69 \ ATOM 55 CA CYS D 7 -3.872 5.814 5.235 1.00 1.69 \ ATOM 56 C CYS D 7 -2.845 5.948 4.144 1.00 1.69 \ ATOM 57 O CYS D 7 -2.752 5.114 3.231 1.00 1.69 \ ATOM 58 CB CYS D 7 -3.241 5.098 6.425 1.00 1.69 \ ATOM 59 SG CYS D 7 -4.312 4.999 7.872 1.00 1.69 \ ATOM 60 N GLY D 8 -2.057 7.017 4.252 1.00 0.76 \ ATOM 61 CA GLY D 8 -0.947 7.244 3.360 1.00 0.76 \ ATOM 62 C GLY D 8 -1.347 7.290 1.906 1.00 0.76 \ ATOM 63 O GLY D 8 -2.381 7.879 1.519 1.00 0.76 \ ATOM 64 N SER D 9 -0.559 6.587 1.108 1.00 -0.47 \ ATOM 65 CA SER D 9 -0.773 6.523 -0.330 1.00 -0.47 \ ATOM 66 C SER D 9 -2.126 5.884 -0.710 1.00 -0.47 \ ATOM 67 O SER D 9 -2.657 6.114 -1.813 1.00 -0.47 \ ATOM 68 CB SER D 9 0.383 5.792 -1.006 1.00 -0.47 \ ATOM 69 OG SER D 9 0.460 4.440 -0.560 1.00 -0.47 \ ATOM 70 N HIS D 10 -2.680 5.064 0.187 1.00 -0.23 \ ATOM 71 CA HIS D 10 -3.957 4.430 -0.123 1.00 -0.23 \ ATOM 72 C HIS D 10 -5.088 5.429 -0.242 1.00 -0.23 \ ATOM 73 O HIS D 10 -6.009 5.191 -1.019 1.00 -0.23 \ ATOM 74 CB HIS D 10 -4.305 3.395 0.902 1.00 -0.23 \ ATOM 75 CG HIS D 10 -3.291 2.320 1.000 1.00 -0.23 \ ATOM 76 ND1 HIS D 10 -3.104 1.386 0.005 1.00 -0.23 \ ATOM 77 CD2 HIS D 10 -2.373 2.064 1.954 1.00 -0.23 \ ATOM 78 CE1 HIS D 10 -2.119 0.577 0.361 1.00 -0.23 \ ATOM 79 NE2 HIS D 10 -1.680 0.949 1.548 1.00 -0.23 \ ATOM 80 N LEU D 11 -5.028 6.532 0.508 1.00 1.69 \ ATOM 81 CA LEU D 11 -6.020 7.600 0.311 1.00 1.69 \ ATOM 82 C LEU D 11 -5.930 8.197 -1.101 1.00 1.69 \ ATOM 83 O LEU D 11 -6.963 8.448 -1.750 1.00 1.69 \ ATOM 84 CB LEU D 11 -5.842 8.698 1.358 1.00 1.69 \ ATOM 85 CG LEU D 11 -6.876 9.832 1.214 1.00 1.69 \ ATOM 86 CD1 LEU D 11 -8.314 9.262 1.151 1.00 1.69 \ ATOM 87 CD2 LEU D 11 -6.717 10.709 2.358 1.00 1.69 \ ATOM 88 N VAL D 12 -4.703 8.461 -1.557 1.00 0.76 \ ATOM 89 CA VAL D 12 -4.490 9.014 -2.886 1.00 0.76 \ ATOM 90 C VAL D 12 -4.976 8.077 -3.998 1.00 0.76 \ ATOM 91 O VAL D 12 -5.540 8.538 -4.964 1.00 0.76 \ ATOM 92 CB VAL D 12 -3.025 9.398 -3.062 1.00 0.76 \ ATOM 93 CG1 VAL D 12 -2.713 9.720 -4.503 1.00 0.76 \ ATOM 94 CG2 VAL D 12 -2.747 10.582 -2.118 1.00 0.76 \ ATOM 95 N GLU D 13 -4.771 6.777 -3.823 1.00 0.64 \ ATOM 96 CA GLU D 13 -5.318 5.773 -4.739 1.00 0.64 \ ATOM 97 C GLU D 13 -6.841 5.834 -4.781 1.00 0.64 \ ATOM 98 O GLU D 13 -7.428 5.761 -5.862 1.00 0.64 \ ATOM 99 CB GLU D 13 -4.858 4.382 -4.329 1.00 0.64 \ ATOM 100 CG GLU D 13 -3.366 4.156 -4.640 1.00 0.64 \ ATOM 101 CD GLU D 13 -3.126 3.898 -6.136 1.00 0.64 \ ATOM 102 OE1 GLU D 13 -4.101 3.760 -6.926 1.00 0.64 \ ATOM 103 OE2 GLU D 13 -1.941 3.835 -6.532 1.00 0.64 \ ATOM 104 N ALA D 14 -7.478 5.969 -3.622 1.00 0.02 \ ATOM 105 CA ALA D 14 -8.944 6.047 -3.587 1.00 0.02 \ ATOM 106 C ALA D 14 -9.446 7.315 -4.264 1.00 0.02 \ ATOM 107 O ALA D 14 -10.434 7.296 -5.013 1.00 0.02 \ ATOM 108 CB ALA D 14 -9.472 5.957 -2.147 1.00 0.02 \ ATOM 109 N LEU D 15 -8.806 8.438 -3.983 1.00 1.69 \ ATOM 110 CA LEU D 15 -9.194 9.688 -4.622 1.00 1.69 \ ATOM 111 C LEU D 15 -9.089 9.571 -6.143 1.00 1.69 \ ATOM 112 O LEU D 15 -9.968 10.056 -6.886 1.00 1.69 \ ATOM 113 CB LEU D 15 -8.313 10.840 -4.121 1.00 1.69 \ ATOM 114 CG LEU D 15 -8.724 11.355 -2.746 1.00 1.69 \ ATOM 115 CD1 LEU D 15 -7.687 12.334 -2.230 1.00 1.69 \ ATOM 116 CD2 LEU D 15 -10.085 12.031 -2.776 1.00 1.69 \ ATOM 117 N TYR D 16 -8.017 8.942 -6.609 1.00 -0.21 \ ATOM 118 CA TYR D 16 -7.802 8.727 -8.026 1.00 -0.21 \ ATOM 119 C TYR D 16 -8.971 7.950 -8.645 1.00 -0.21 \ ATOM 120 O TYR D 16 -9.481 8.367 -9.691 1.00 -0.21 \ ATOM 121 CB TYR D 16 -6.473 7.990 -8.265 1.00 -0.21 \ ATOM 122 CG TYR D 16 -6.265 7.746 -9.744 1.00 -0.21 \ ATOM 123 CD1 TYR D 16 -5.880 8.784 -10.606 1.00 -0.21 \ ATOM 124 CD2 TYR D 16 -6.491 6.489 -10.289 1.00 -0.21 \ ATOM 125 CE1 TYR D 16 -5.770 8.569 -11.988 1.00 -0.21 \ ATOM 126 CE2 TYR D 16 -6.361 6.276 -11.669 1.00 -0.21 \ ATOM 127 CZ TYR D 16 -5.995 7.313 -12.492 1.00 -0.21 \ ATOM 128 OH TYR D 16 -5.848 7.108 -13.855 1.00 -0.21 \ ATOM 129 N LEU D 17 -9.419 6.895 -7.964 1.00 -0.24 \ ATOM 130 CA LEU D 17 -10.495 6.036 -8.509 1.00 -0.24 \ ATOM 131 C LEU D 17 -11.810 6.772 -8.476 1.00 -0.24 \ ATOM 132 O LEU D 17 -12.602 6.710 -9.444 1.00 -0.24 \ ATOM 133 CB LEU D 17 -10.610 4.738 -7.736 1.00 -0.24 \ ATOM 134 CG LEU D 17 -9.405 3.850 -8.042 1.00 -0.24 \ ATOM 135 CD1 LEU D 17 -9.349 2.628 -7.105 1.00 -0.24 \ ATOM 136 CD2 LEU D 17 -9.409 3.441 -9.531 1.00 -0.24 \ ATOM 137 N VAL D 18 -12.038 7.485 -7.380 1.00 0.30 \ ATOM 138 CA VAL D 18 -13.304 8.199 -7.196 1.00 0.30 \ ATOM 139 C VAL D 18 -13.470 9.348 -8.187 1.00 0.30 \ ATOM 140 O VAL D 18 -14.575 9.571 -8.713 1.00 0.30 \ ATOM 141 CB VAL D 18 -13.424 8.715 -5.741 1.00 0.30 \ ATOM 142 CG1 VAL D 18 -14.596 9.698 -5.581 1.00 0.30 \ ATOM 143 CG2 VAL D 18 -13.584 7.519 -4.805 1.00 0.30 \ ATOM 144 N CYS D 19 -12.382 10.087 -8.435 1.00 1.69 \ ATOM 145 CA CYS D 19 -12.481 11.340 -9.195 1.00 1.69 \ ATOM 146 C CYS D 19 -12.251 11.198 -10.705 1.00 1.69 \ ATOM 147 O CYS D 19 -12.779 11.988 -11.509 1.00 1.69 \ ATOM 148 CB CYS D 19 -11.550 12.394 -8.581 1.00 1.69 \ ATOM 149 SG CYS D 19 -11.948 12.790 -6.907 1.00 1.69 \ ATOM 150 N GLY D 20 -11.462 10.209 -11.075 1.00 -0.12 \ ATOM 151 CA GLY D 20 -11.207 9.937 -12.485 1.00 -0.12 \ ATOM 152 C GLY D 20 -10.636 11.151 -13.186 1.00 -0.12 \ ATOM 153 O GLY D 20 -9.732 11.844 -12.660 1.00 -0.12 \ ATOM 154 N GLU D 21 -11.192 11.456 -14.355 1.00 0.18 \ ATOM 155 CA GLU D 21 -10.640 12.547 -15.151 1.00 0.18 \ ATOM 156 C GLU D 21 -10.879 13.931 -14.557 1.00 0.18 \ ATOM 157 O GLU D 21 -10.271 14.903 -15.007 1.00 0.18 \ ATOM 158 CB GLU D 21 -11.138 12.472 -16.600 1.00 0.18 \ ATOM 159 CG GLU D 21 -12.642 12.687 -16.774 1.00 0.18 \ ATOM 160 CD GLU D 21 -13.040 12.788 -18.242 1.00 0.18 \ ATOM 161 OE1 GLU D 21 -12.248 12.337 -19.110 1.00 0.18 \ ATOM 162 OE2 GLU D 21 -14.139 13.329 -18.520 1.00 0.18 \ ATOM 163 N ARG D 22 -11.767 14.019 -13.560 1.00 -0.58 \ ATOM 164 CA ARG D 22 -12.017 15.275 -12.878 1.00 -0.58 \ ATOM 165 C ARG D 22 -10.771 15.708 -12.143 1.00 -0.58 \ ATOM 166 O ARG D 22 -10.581 16.914 -11.945 1.00 -0.58 \ ATOM 167 CB ARG D 22 -13.153 15.154 -11.856 1.00 -0.58 \ ATOM 168 CG ARG D 22 -14.545 15.057 -12.434 1.00 -0.58 \ ATOM 169 CD ARG D 22 -15.565 14.960 -11.303 1.00 -0.58 \ ATOM 170 NE ARG D 22 -15.597 13.607 -10.723 1.00 -0.58 \ ATOM 171 CZ ARG D 22 -16.436 13.223 -9.757 1.00 -0.58 \ ATOM 172 NH1 ARG D 22 -16.402 11.980 -9.286 1.00 -0.58 \ ATOM 173 NH2 ARG D 22 -17.304 14.099 -9.248 1.00 -0.58 \ ATOM 174 N GLY D 23 -9.957 14.734 -11.709 1.00 1.69 \ ATOM 175 CA GLY D 23 -8.798 15.028 -10.856 1.00 1.69 \ ATOM 176 C GLY D 23 -9.266 15.381 -9.460 1.00 1.69 \ ATOM 177 O GLY D 23 -10.452 15.319 -9.167 1.00 1.69 \ ATOM 178 N PHE D 24 -8.335 15.768 -8.604 1.00 1.16 \ ATOM 179 CA PHE D 24 -8.633 15.990 -7.197 1.00 1.16 \ ATOM 180 C PHE D 24 -7.529 16.786 -6.538 1.00 1.16 \ ATOM 181 O PHE D 24 -6.442 16.963 -7.108 1.00 1.16 \ ATOM 182 CB PHE D 24 -8.782 14.655 -6.453 1.00 1.16 \ ATOM 183 CG PHE D 24 -7.540 13.785 -6.482 1.00 1.16 \ ATOM 184 CD1 PHE D 24 -7.343 12.851 -7.506 1.00 1.16 \ ATOM 185 CD2 PHE D 24 -6.577 13.900 -5.472 1.00 1.16 \ ATOM 186 CE1 PHE D 24 -6.214 12.047 -7.520 1.00 1.16 \ ATOM 187 CE2 PHE D 24 -5.431 13.116 -5.475 1.00 1.16 \ ATOM 188 CZ PHE D 24 -5.254 12.162 -6.504 1.00 1.16 \ ATOM 189 N PHE D 25 -7.804 17.265 -5.333 0.50 0.51 \ ATOM 190 CA PHE D 25 -6.775 17.876 -4.522 0.50 0.51 \ ATOM 191 C PHE D 25 -6.546 17.094 -3.231 0.50 0.51 \ ATOM 192 O PHE D 25 -7.496 16.667 -2.561 0.50 0.51 \ ATOM 193 CB PHE D 25 -7.057 19.364 -4.253 0.50 0.51 \ ATOM 194 CG PHE D 25 -8.402 19.650 -3.645 0.50 0.51 \ ATOM 195 CD1 PHE D 25 -9.537 19.753 -4.446 0.50 0.51 \ ATOM 196 CD2 PHE D 25 -8.524 19.871 -2.276 0.50 0.51 \ ATOM 197 CE1 PHE D 25 -10.774 20.043 -3.883 0.50 0.51 \ ATOM 198 CE2 PHE D 25 -9.756 20.167 -1.715 0.50 0.51 \ ATOM 199 CZ PHE D 25 -10.876 20.249 -2.510 0.50 0.51 \ ATOM 200 N TYR D 26 -5.273 16.877 -2.926 1.00 -0.23 \ ATOM 201 CA TYR D 26 -4.867 16.176 -1.728 1.00 -0.23 \ ATOM 202 C TYR D 26 -4.302 17.192 -0.755 1.00 -0.23 \ ATOM 203 O TYR D 26 -3.244 17.805 -1.002 1.00 -0.23 \ ATOM 204 CB TYR D 26 -3.842 15.106 -2.108 1.00 -0.23 \ ATOM 205 CG TYR D 26 -3.271 14.369 -0.931 1.00 -0.23 \ ATOM 206 CD1 TYR D 26 -1.961 14.619 -0.509 1.00 -0.23 \ ATOM 207 CD2 TYR D 26 -4.045 13.450 -0.213 1.00 -0.23 \ ATOM 208 CE1 TYR D 26 -1.425 13.937 0.604 1.00 -0.23 \ ATOM 209 CE2 TYR D 26 -3.498 12.748 0.869 1.00 -0.23 \ ATOM 210 CZ TYR D 26 -2.200 13.006 1.266 1.00 -0.23 \ ATOM 211 OH TYR D 26 -1.674 12.327 2.355 1.00 -0.23 \ ATOM 212 N THR D 27 -4.994 17.358 0.369 0.50 -0.98 \ ATOM 213 CA THR D 27 -4.645 18.406 1.316 0.50 -0.98 \ ATOM 214 C THR D 27 -4.632 17.914 2.761 0.50 -0.98 \ ATOM 215 O THR D 27 -5.614 18.069 3.484 0.50 -0.98 \ ATOM 216 CB THR D 27 -5.568 19.639 1.148 0.50 -0.98 \ ATOM 217 OG1 THR D 27 -6.919 19.214 0.888 0.50 -0.98 \ ATOM 218 CG2 THR D 27 -5.077 20.501 -0.020 0.50 -0.98 \ ATOM 219 N PRO D 28 -3.513 17.303 3.170 1.00 -0.78 \ ATOM 220 CA PRO D 28 -3.382 16.858 4.545 1.00 -0.78 \ ATOM 221 C PRO D 28 -3.212 18.030 5.497 1.00 -0.78 \ ATOM 222 O PRO D 28 -2.832 19.142 5.079 1.00 -0.78 \ ATOM 223 CB PRO D 28 -2.129 15.984 4.527 1.00 -0.78 \ ATOM 224 CG PRO D 28 -1.412 16.313 3.336 1.00 -0.78 \ ATOM 225 CD PRO D 28 -2.297 17.046 2.386 1.00 -0.78 \ ATOM 226 N LYS D 29 -3.514 17.792 6.771 1.00 -0.90 \ ATOM 227 CA LYS D 29 -3.194 18.747 7.812 1.00 -0.90 \ ATOM 228 C LYS D 29 -1.705 18.927 7.975 1.00 -0.90 \ ATOM 229 O LYS D 29 -0.916 17.953 7.857 1.00 -0.90 \ ATOM 230 CB LYS D 29 -3.767 18.305 9.150 1.00 -0.90 \ ATOM 231 CG LYS D 29 -4.957 19.081 9.593 1.00 -0.90 \ ATOM 232 CD LYS D 29 -5.464 18.545 10.891 1.00 -0.90 \ ATOM 233 CE LYS D 29 -4.617 18.975 12.039 1.00 -0.90 \ ATOM 234 NZ LYS D 29 -5.324 18.532 13.250 1.00 -0.90 \ ATOM 235 N THR D 30 -1.342 20.134 8.355 1.00 -1.45 \ ATOM 236 CA THR D 30 0.031 20.451 8.616 1.00 -1.45 \ ATOM 237 C THR D 30 0.978 19.324 8.345 1.00 -1.45 \ ATOM 238 CB THR D 30 0.269 20.898 10.054 1.00 -1.45 \ ATOM 239 OG1 THR D 30 1.548 20.484 10.457 1.00 -1.45 \ """, "e4f4tD1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e4f4tD1_csv", state=0, origin=1) cmd.zoom("e4f4tD1_csv", animate=-1)