cmd.read_pdbstr("""\ ATOM 1 N PHE D 1 -21.658 1.128 -1.851 1.00 -1.00 \ ATOM 2 CA PHE D 1 -20.229 1.229 -1.484 1.00 -1.00 \ ATOM 3 C PHE D 1 -20.136 1.053 0.007 1.00 -1.00 \ ATOM 4 O PHE D 1 -21.124 1.202 0.770 1.00 -1.00 \ ATOM 5 CB PHE D 1 -19.655 2.584 -1.963 1.00 -1.00 \ ATOM 6 CG PHE D 1 -19.837 2.843 -3.472 1.00 -1.00 \ ATOM 7 CD1 PHE D 1 -19.560 1.832 -4.415 1.00 -1.00 \ ATOM 8 CD2 PHE D 1 -20.182 4.093 -3.940 1.00 -1.00 \ ATOM 9 CE1 PHE D 1 -19.692 2.037 -5.765 1.00 -1.00 \ ATOM 10 CE2 PHE D 1 -20.326 4.325 -5.325 1.00 -1.00 \ ATOM 11 CZ PHE D 1 -20.099 3.272 -6.234 1.00 -1.00 \ ATOM 12 N VAL D 2 -18.947 0.646 0.420 1.00 -1.00 \ ATOM 13 CA VAL D 2 -18.596 0.460 1.823 1.00 -1.00 \ ATOM 14 C VAL D 2 -17.681 1.601 2.301 1.00 -1.00 \ ATOM 15 O VAL D 2 -16.934 2.212 1.492 1.00 -1.00 \ ATOM 16 CB VAL D 2 -17.858 -0.889 2.071 1.00 -1.00 \ ATOM 17 CG1 VAL D 2 -18.839 -2.083 1.998 1.00 -1.00 \ ATOM 18 CG2 VAL D 2 -16.572 -0.986 1.159 1.00 -1.00 \ ATOM 19 N ASN D 3 -17.736 1.846 3.610 1.00 -0.48 \ ATOM 20 CA ASN D 3 -16.798 2.733 4.264 1.00 -0.48 \ ATOM 21 C ASN D 3 -15.387 2.217 4.188 1.00 -0.48 \ ATOM 22 O ASN D 3 -15.184 1.011 4.036 1.00 -0.48 \ ATOM 23 CB ASN D 3 -17.172 2.944 5.725 1.00 -0.48 \ ATOM 24 CG ASN D 3 -18.462 3.734 5.901 1.00 -0.48 \ ATOM 25 OD1 ASN D 3 -19.354 3.336 6.699 1.00 -0.48 \ ATOM 26 ND2 ASN D 3 -18.609 4.806 5.146 1.00 -0.48 \ ATOM 27 N GLN D 4 -14.428 3.134 4.340 1.00 0.23 \ ATOM 28 CA GLN D 4 -13.041 2.931 3.962 1.00 0.23 \ ATOM 29 C GLN D 4 -12.173 3.269 5.169 1.00 0.23 \ ATOM 30 O GLN D 4 -12.458 4.219 5.890 1.00 0.23 \ ATOM 31 CB GLN D 4 -12.770 3.927 2.874 1.00 0.23 \ ATOM 32 CG GLN D 4 -13.739 3.753 1.717 1.00 0.23 \ ATOM 33 CD GLN D 4 -13.417 2.447 0.938 1.00 0.23 \ ATOM 34 OE1 GLN D 4 -12.276 2.242 0.497 1.00 0.23 \ ATOM 35 NE2 GLN D 4 -14.414 1.605 0.741 1.00 0.23 \ ATOM 36 N HIS D 5 -11.099 2.544 5.329 1.00 -0.03 \ ATOM 37 CA HIS D 5 -9.982 2.956 6.157 1.00 -0.03 \ ATOM 38 C HIS D 5 -8.712 3.064 5.313 1.00 -0.03 \ ATOM 39 O HIS D 5 -8.212 2.047 4.753 1.00 -0.03 \ ATOM 40 CB HIS D 5 -9.923 1.991 7.344 1.00 -0.03 \ ATOM 41 CG HIS D 5 -8.935 2.370 8.359 1.00 -0.03 \ ATOM 42 ND1 HIS D 5 -8.241 1.432 9.064 1.00 -0.03 \ ATOM 43 CD2 HIS D 5 -8.405 3.562 8.681 1.00 -0.03 \ ATOM 44 CE1 HIS D 5 -7.386 2.034 9.873 1.00 -0.03 \ ATOM 45 NE2 HIS D 5 -7.456 3.329 9.646 1.00 -0.03 \ ATOM 46 N LEU D 6 -8.280 4.323 5.124 1.00 1.17 \ ATOM 47 CA LEU D 6 -7.308 4.665 4.178 1.00 1.17 \ ATOM 48 C LEU D 6 -6.271 5.605 4.777 1.00 1.17 \ ATOM 49 O LEU D 6 -6.576 6.752 5.109 1.00 1.17 \ ATOM 50 CB LEU D 6 -7.977 5.305 2.966 1.00 1.17 \ ATOM 51 CG LEU D 6 -9.061 4.643 2.116 1.00 1.17 \ ATOM 52 CD1 LEU D 6 -9.605 5.622 1.058 1.00 1.17 \ ATOM 53 CD2 LEU D 6 -8.598 3.334 1.464 1.00 1.17 \ ATOM 54 N CYS D 7 -5.040 5.076 4.868 1.00 1.69 \ ATOM 55 CA CYS D 7 -3.857 5.813 5.119 1.00 1.69 \ ATOM 56 C CYS D 7 -2.848 5.890 4.052 1.00 1.69 \ ATOM 57 O CYS D 7 -2.776 5.097 3.085 1.00 1.69 \ ATOM 58 CB CYS D 7 -3.134 5.244 6.349 1.00 1.69 \ ATOM 59 SG CYS D 7 -4.257 4.976 7.645 1.00 1.69 \ ATOM 60 N GLY D 8 -2.026 6.906 4.260 1.00 0.76 \ ATOM 61 CA GLY D 8 -1.025 7.290 3.341 1.00 0.76 \ ATOM 62 C GLY D 8 -1.415 7.332 1.871 1.00 0.76 \ ATOM 63 O GLY D 8 -2.426 7.918 1.442 1.00 0.76 \ ATOM 64 N SER D 9 -0.638 6.615 1.130 1.00 -0.47 \ ATOM 65 CA SER D 9 -0.803 6.563 -0.348 1.00 -0.47 \ ATOM 66 C SER D 9 -2.101 5.818 -0.730 1.00 -0.47 \ ATOM 67 O SER D 9 -2.633 6.033 -1.799 1.00 -0.47 \ ATOM 68 CB SER D 9 0.395 5.869 -0.920 1.00 -0.47 \ ATOM 69 OG SER D 9 0.485 4.562 -0.389 1.00 -0.47 \ ATOM 70 N HIS D 10 -2.697 5.027 0.198 1.00 -0.23 \ ATOM 71 CA HIS D 10 -4.006 4.432 -0.115 1.00 -0.23 \ ATOM 72 C HIS D 10 -5.139 5.421 -0.271 1.00 -0.23 \ ATOM 73 O HIS D 10 -6.092 5.206 -1.162 1.00 -0.23 \ ATOM 74 CB HIS D 10 -4.395 3.361 0.824 1.00 -0.23 \ ATOM 75 CG HIS D 10 -3.385 2.282 0.892 1.00 -0.23 \ ATOM 76 ND1 HIS D 10 -3.167 1.431 -0.176 1.00 -0.23 \ ATOM 77 CD2 HIS D 10 -2.468 1.977 1.842 1.00 -0.23 \ ATOM 78 CE1 HIS D 10 -2.186 0.604 0.166 1.00 -0.23 \ ATOM 79 NE2 HIS D 10 -1.753 0.919 1.379 1.00 -0.23 \ ATOM 80 N LEU D 11 -5.026 6.527 0.459 1.00 1.69 \ ATOM 81 CA LEU D 11 -5.990 7.610 0.272 1.00 1.69 \ ATOM 82 C LEU D 11 -5.966 8.213 -1.134 1.00 1.69 \ ATOM 83 O LEU D 11 -6.984 8.458 -1.687 1.00 1.69 \ ATOM 84 CB LEU D 11 -5.801 8.727 1.271 1.00 1.69 \ ATOM 85 CG LEU D 11 -6.822 9.866 1.055 1.00 1.69 \ ATOM 86 CD1 LEU D 11 -8.291 9.353 0.899 1.00 1.69 \ ATOM 87 CD2 LEU D 11 -6.703 10.757 2.322 1.00 1.69 \ ATOM 88 N VAL D 12 -4.764 8.467 -1.644 1.00 0.76 \ ATOM 89 CA VAL D 12 -4.524 9.029 -2.918 1.00 0.76 \ ATOM 90 C VAL D 12 -5.005 8.102 -4.064 1.00 0.76 \ ATOM 91 O VAL D 12 -5.651 8.526 -4.985 1.00 0.76 \ ATOM 92 CB VAL D 12 -3.082 9.471 -3.047 1.00 0.76 \ ATOM 93 CG1 VAL D 12 -2.648 9.593 -4.513 1.00 0.76 \ ATOM 94 CG2 VAL D 12 -2.861 10.758 -2.229 1.00 0.76 \ ATOM 95 N GLU D 13 -4.726 6.821 -3.942 1.00 0.64 \ ATOM 96 CA GLU D 13 -5.322 5.837 -4.770 1.00 0.64 \ ATOM 97 C GLU D 13 -6.861 5.910 -4.809 1.00 0.64 \ ATOM 98 O GLU D 13 -7.468 5.828 -5.876 1.00 0.64 \ ATOM 99 CB GLU D 13 -4.883 4.454 -4.213 1.00 0.64 \ ATOM 100 CG GLU D 13 -3.394 4.109 -4.514 1.00 0.64 \ ATOM 101 CD GLU D 13 -3.142 3.920 -6.030 1.00 0.64 \ ATOM 102 OE1 GLU D 13 -4.137 3.777 -6.772 1.00 0.64 \ ATOM 103 OE2 GLU D 13 -1.942 3.887 -6.480 1.00 0.64 \ ATOM 104 N ALA D 14 -7.480 5.958 -3.624 1.00 0.02 \ ATOM 105 CA ALA D 14 -8.924 6.041 -3.549 1.00 0.02 \ ATOM 106 C ALA D 14 -9.466 7.328 -4.194 1.00 0.02 \ ATOM 107 O ALA D 14 -10.432 7.298 -4.935 1.00 0.02 \ ATOM 108 CB ALA D 14 -9.409 5.941 -2.122 1.00 0.02 \ ATOM 109 N LEU D 15 -8.860 8.452 -3.926 1.00 1.69 \ ATOM 110 CA LEU D 15 -9.221 9.695 -4.627 1.00 1.69 \ ATOM 111 C LEU D 15 -9.103 9.627 -6.157 1.00 1.69 \ ATOM 112 O LEU D 15 -9.935 10.161 -6.918 1.00 1.69 \ ATOM 113 CB LEU D 15 -8.375 10.864 -4.062 1.00 1.69 \ ATOM 114 CG LEU D 15 -8.821 11.421 -2.713 1.00 1.69 \ ATOM 115 CD1 LEU D 15 -7.675 12.324 -2.239 1.00 1.69 \ ATOM 116 CD2 LEU D 15 -10.206 12.141 -2.737 1.00 1.69 \ ATOM 117 N TYR D 16 -8.056 8.961 -6.592 1.00 -0.21 \ ATOM 118 CA TYR D 16 -7.813 8.770 -7.993 1.00 -0.21 \ ATOM 119 C TYR D 16 -8.980 8.031 -8.718 1.00 -0.21 \ ATOM 120 O TYR D 16 -9.418 8.406 -9.736 1.00 -0.21 \ ATOM 121 CB TYR D 16 -6.524 7.984 -8.218 1.00 -0.21 \ ATOM 122 CG TYR D 16 -6.318 7.769 -9.692 1.00 -0.21 \ ATOM 123 CD1 TYR D 16 -5.925 8.794 -10.484 1.00 -0.21 \ ATOM 124 CD2 TYR D 16 -6.621 6.579 -10.275 1.00 -0.21 \ ATOM 125 CE1 TYR D 16 -5.777 8.645 -11.820 1.00 -0.21 \ ATOM 126 CE2 TYR D 16 -6.501 6.400 -11.675 1.00 -0.21 \ ATOM 127 CZ TYR D 16 -6.048 7.460 -12.426 1.00 -0.21 \ ATOM 128 OH TYR D 16 -5.842 7.343 -13.779 1.00 -0.21 \ ATOM 129 N LEU D 17 -9.387 6.947 -8.121 1.00 -0.24 \ ATOM 130 CA LEU D 17 -10.467 6.110 -8.671 1.00 -0.24 \ ATOM 131 C LEU D 17 -11.780 6.825 -8.570 1.00 -0.24 \ ATOM 132 O LEU D 17 -12.555 6.816 -9.484 1.00 -0.24 \ ATOM 133 CB LEU D 17 -10.563 4.794 -7.910 1.00 -0.24 \ ATOM 134 CG LEU D 17 -9.391 3.913 -8.258 1.00 -0.24 \ ATOM 135 CD1 LEU D 17 -9.190 2.819 -7.079 1.00 -0.24 \ ATOM 136 CD2 LEU D 17 -9.568 3.339 -9.684 1.00 -0.24 \ ATOM 137 N VAL D 18 -12.021 7.476 -7.439 1.00 0.30 \ ATOM 138 CA VAL D 18 -13.248 8.216 -7.274 1.00 0.30 \ ATOM 139 C VAL D 18 -13.428 9.405 -8.209 1.00 0.30 \ ATOM 140 O VAL D 18 -14.512 9.653 -8.646 1.00 0.30 \ ATOM 141 CB VAL D 18 -13.473 8.665 -5.808 1.00 0.30 \ ATOM 142 CG1 VAL D 18 -14.478 9.813 -5.757 1.00 0.30 \ ATOM 143 CG2 VAL D 18 -13.856 7.508 -4.930 1.00 0.30 \ ATOM 144 N CYS D 19 -12.375 10.186 -8.438 1.00 1.69 \ ATOM 145 CA CYS D 19 -12.520 11.407 -9.144 1.00 1.69 \ ATOM 146 C CYS D 19 -12.301 11.253 -10.647 1.00 1.69 \ ATOM 147 O CYS D 19 -12.734 12.102 -11.398 1.00 1.69 \ ATOM 148 CB CYS D 19 -11.587 12.454 -8.566 1.00 1.69 \ ATOM 149 SG CYS D 19 -11.936 12.779 -6.853 1.00 1.69 \ ATOM 150 N GLY D 20 -11.550 10.261 -11.075 1.00 -0.12 \ ATOM 151 CA GLY D 20 -11.324 10.104 -12.493 1.00 -0.12 \ ATOM 152 C GLY D 20 -10.642 11.286 -13.122 1.00 -0.12 \ ATOM 153 O GLY D 20 -9.678 11.856 -12.544 1.00 -0.12 \ ATOM 154 N GLU D 21 -11.132 11.633 -14.315 1.00 0.18 \ ATOM 155 CA GLU D 21 -10.598 12.739 -15.150 1.00 0.18 \ ATOM 156 C GLU D 21 -10.865 14.124 -14.602 1.00 0.18 \ ATOM 157 O GLU D 21 -10.270 15.115 -15.061 1.00 0.18 \ ATOM 158 CB GLU D 21 -11.122 12.626 -16.602 1.00 0.18 \ ATOM 159 CG GLU D 21 -12.686 12.529 -16.795 1.00 0.18 \ ATOM 160 CD GLU D 21 -13.127 12.672 -18.236 1.00 0.18 \ ATOM 161 OE1 GLU D 21 -12.342 12.219 -19.095 1.00 0.18 \ ATOM 162 OE2 GLU D 21 -14.232 13.221 -18.529 1.00 0.18 \ ATOM 163 N ARG D 22 -11.752 14.185 -13.589 1.00 -0.58 \ ATOM 164 CA ARG D 22 -11.953 15.414 -12.810 1.00 -0.58 \ ATOM 165 C ARG D 22 -10.734 15.798 -11.981 1.00 -0.58 \ ATOM 166 O ARG D 22 -10.406 16.998 -11.830 1.00 -0.58 \ ATOM 167 CB ARG D 22 -13.131 15.271 -11.856 1.00 -0.58 \ ATOM 168 CG ARG D 22 -14.502 15.166 -12.531 1.00 -0.58 \ ATOM 169 CD ARG D 22 -15.568 15.075 -11.439 1.00 -0.58 \ ATOM 170 NE ARG D 22 -15.633 13.697 -10.950 1.00 -0.58 \ ATOM 171 CZ ARG D 22 -16.311 13.266 -9.882 1.00 -0.58 \ ATOM 172 NH1 ARG D 22 -16.258 11.992 -9.589 1.00 -0.58 \ ATOM 173 NH2 ARG D 22 -17.008 14.102 -9.115 1.00 -0.58 \ ATOM 174 N GLY D 23 -10.084 14.792 -11.402 1.00 1.69 \ ATOM 175 CA GLY D 23 -8.903 15.005 -10.651 1.00 1.69 \ ATOM 176 C GLY D 23 -9.362 15.378 -9.288 1.00 1.69 \ ATOM 177 O GLY D 23 -10.562 15.377 -8.995 1.00 1.69 \ ATOM 178 N PHE D 24 -8.392 15.687 -8.448 1.00 1.16 \ ATOM 179 CA PHE D 24 -8.628 15.976 -7.101 1.00 1.16 \ ATOM 180 C PHE D 24 -7.528 16.779 -6.506 1.00 1.16 \ ATOM 181 O PHE D 24 -6.476 16.924 -7.056 1.00 1.16 \ ATOM 182 CB PHE D 24 -8.756 14.651 -6.345 1.00 1.16 \ ATOM 183 CG PHE D 24 -7.518 13.758 -6.451 1.00 1.16 \ ATOM 184 CD1 PHE D 24 -7.363 12.866 -7.500 1.00 1.16 \ ATOM 185 CD2 PHE D 24 -6.556 13.776 -5.408 1.00 1.16 \ ATOM 186 CE1 PHE D 24 -6.283 12.090 -7.583 1.00 1.16 \ ATOM 187 CE2 PHE D 24 -5.450 12.998 -5.467 1.00 1.16 \ ATOM 188 CZ PHE D 24 -5.306 12.118 -6.557 1.00 1.16 \ ATOM 189 N PHE D 25 -7.825 17.330 -5.348 0.50 0.51 \ ATOM 190 CA PHE D 25 -6.796 17.878 -4.482 0.50 0.51 \ ATOM 191 C PHE D 25 -6.588 17.060 -3.213 0.50 0.51 \ ATOM 192 O PHE D 25 -7.537 16.598 -2.568 0.50 0.51 \ ATOM 193 CB PHE D 25 -7.057 19.355 -4.176 0.50 0.51 \ ATOM 194 CG PHE D 25 -8.358 19.646 -3.469 0.50 0.51 \ ATOM 195 CD1 PHE D 25 -9.562 19.799 -4.185 0.50 0.51 \ ATOM 196 CD2 PHE D 25 -8.362 19.875 -2.091 0.50 0.51 \ ATOM 197 CE1 PHE D 25 -10.714 20.099 -3.517 0.50 0.51 \ ATOM 198 CE2 PHE D 25 -9.503 20.196 -1.457 0.50 0.51 \ ATOM 199 CZ PHE D 25 -10.682 20.303 -2.175 0.50 0.51 \ ATOM 200 N TYR D 26 -5.312 16.880 -2.885 1.00 -0.23 \ ATOM 201 CA TYR D 26 -4.863 16.183 -1.678 1.00 -0.23 \ ATOM 202 C TYR D 26 -4.298 17.216 -0.736 1.00 -0.23 \ ATOM 203 O TYR D 26 -3.222 17.829 -0.977 1.00 -0.23 \ ATOM 204 CB TYR D 26 -3.856 15.063 -2.011 1.00 -0.23 \ ATOM 205 CG TYR D 26 -3.257 14.346 -0.864 1.00 -0.23 \ ATOM 206 CD1 TYR D 26 -1.938 14.593 -0.483 1.00 -0.23 \ ATOM 207 CD2 TYR D 26 -4.003 13.430 -0.166 1.00 -0.23 \ ATOM 208 CE1 TYR D 26 -1.387 13.937 0.658 1.00 -0.23 \ ATOM 209 CE2 TYR D 26 -3.483 12.736 0.910 1.00 -0.23 \ ATOM 210 CZ TYR D 26 -2.193 13.004 1.320 1.00 -0.23 \ ATOM 211 OH TYR D 26 -1.756 12.307 2.355 1.00 -0.23 \ ATOM 212 N THR D 27 -4.972 17.382 0.376 0.50 -0.98 \ ATOM 213 CA THR D 27 -4.581 18.420 1.325 0.50 -0.98 \ ATOM 214 C THR D 27 -4.665 17.899 2.756 0.50 -0.98 \ ATOM 215 O THR D 27 -5.678 18.076 3.443 0.50 -0.98 \ ATOM 216 CB THR D 27 -5.344 19.761 1.047 0.50 -0.98 \ ATOM 217 OG1 THR D 27 -6.706 19.501 0.662 0.50 -0.98 \ ATOM 218 CG2 THR D 27 -4.674 20.522 -0.079 0.50 -0.98 \ ATOM 219 N PRO D 28 -3.578 17.246 3.216 1.00 -0.78 \ ATOM 220 CA PRO D 28 -3.483 16.850 4.595 1.00 -0.78 \ ATOM 221 C PRO D 28 -3.320 18.044 5.531 1.00 -0.78 \ ATOM 222 O PRO D 28 -2.933 19.159 5.161 1.00 -0.78 \ ATOM 223 CB PRO D 28 -2.204 16.007 4.635 1.00 -0.78 \ ATOM 224 CG PRO D 28 -1.478 16.342 3.428 1.00 -0.78 \ ATOM 225 CD PRO D 28 -2.320 17.007 2.487 1.00 -0.78 \ ATOM 226 N LYS D 29 -3.640 17.810 6.776 1.00 -0.90 \ ATOM 227 CA LYS D 29 -3.151 18.711 7.799 1.00 -0.90 \ ATOM 228 C LYS D 29 -1.638 18.819 7.852 1.00 -0.90 \ ATOM 229 O LYS D 29 -0.902 17.809 7.793 1.00 -0.90 \ ATOM 230 CB LYS D 29 -3.647 18.314 9.213 1.00 -0.90 \ ATOM 231 CG LYS D 29 -4.851 19.025 9.618 1.00 -0.90 \ ATOM 232 CD LYS D 29 -5.339 18.533 10.937 1.00 -0.90 \ ATOM 233 CE LYS D 29 -4.664 19.161 12.063 1.00 -0.90 \ ATOM 234 NZ LYS D 29 -5.039 18.384 13.312 1.00 -0.90 \ ATOM 235 N THR D 30 -1.211 20.078 7.984 1.00 -1.45 \ ATOM 236 CA THR D 30 0.118 20.475 8.473 1.00 -1.45 \ ATOM 237 C THR D 30 1.278 19.776 7.760 1.00 -1.45 \ ATOM 238 O THR D 30 1.143 19.219 6.653 1.00 -1.45 \ ATOM 239 CB THR D 30 0.265 20.174 9.952 1.00 -1.45 \ ATOM 240 OG1 THR D 30 -0.877 20.665 10.689 1.00 -1.45 \ ATOM 241 CG2 THR D 30 1.580 20.738 10.503 1.00 -1.45 \ """, "e4f4vD1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e4f4vD1_csv", state=0, origin=1) cmd.zoom("e4f4vD1_csv", animate=-1)