cmd.read_pdbstr("""\ ATOM 1 N PHE D 1 9.886 -19.465 -6.966 1.00 -1.00 \ ATOM 2 CA PHE D 1 9.112 -18.243 -6.563 1.00 -1.00 \ ATOM 3 C PHE D 1 9.174 -18.010 -5.048 1.00 -1.00 \ ATOM 4 O PHE D 1 9.418 -18.936 -4.264 1.00 -1.00 \ ATOM 5 CB PHE D 1 7.648 -18.366 -7.015 1.00 -1.00 \ ATOM 6 CG PHE D 1 7.478 -18.601 -8.495 1.00 -1.00 \ ATOM 7 CD1 PHE D 1 8.092 -17.769 -9.424 1.00 -1.00 \ ATOM 8 CD2 PHE D 1 6.678 -19.638 -8.960 1.00 -1.00 \ ATOM 9 CE1 PHE D 1 7.925 -17.972 -10.791 1.00 -1.00 \ ATOM 10 CE2 PHE D 1 6.513 -19.864 -10.324 1.00 -1.00 \ ATOM 11 CZ PHE D 1 7.153 -19.041 -11.243 1.00 -1.00 \ ATOM 12 N VAL D 2 8.965 -16.763 -4.650 1.00 -1.00 \ ATOM 13 CA VAL D 2 8.977 -16.365 -3.246 1.00 -1.00 \ ATOM 14 C VAL D 2 7.546 -16.191 -2.720 1.00 -1.00 \ ATOM 15 O VAL D 2 6.609 -15.938 -3.485 1.00 -1.00 \ ATOM 16 CB VAL D 2 9.778 -15.044 -3.019 1.00 -1.00 \ ATOM 17 CG1 VAL D 2 11.280 -15.239 -3.317 1.00 -1.00 \ ATOM 18 CG2 VAL D 2 9.202 -13.881 -3.846 1.00 -1.00 \ ATOM 19 N ASN D 3 7.385 -16.330 -1.414 1.00 -0.48 \ ATOM 20 CA ASN D 3 6.113 -16.003 -0.771 1.00 -0.48 \ ATOM 21 C ASN D 3 5.822 -14.513 -0.839 1.00 -0.48 \ ATOM 22 O ASN D 3 6.736 -13.687 -0.984 1.00 -0.48 \ ATOM 23 CB ASN D 3 6.091 -16.480 0.674 1.00 -0.48 \ ATOM 24 CG ASN D 3 6.060 -17.976 0.772 1.00 -0.48 \ ATOM 25 OD1 ASN D 3 5.267 -18.633 0.089 1.00 -0.48 \ ATOM 26 ND2 ASN D 3 6.942 -18.539 1.596 1.00 -0.48 \ ATOM 27 N GLN D 4 4.535 -14.200 -0.731 1.00 0.23 \ ATOM 28 CA GLN D 4 3.990 -12.900 -1.094 1.00 0.23 \ ATOM 29 C GLN D 4 3.242 -12.277 0.072 1.00 0.23 \ ATOM 30 O GLN D 4 2.547 -12.968 0.796 1.00 0.23 \ ATOM 31 CB GLN D 4 3.001 -13.098 -2.236 1.00 0.23 \ ATOM 32 CG GLN D 4 3.585 -13.837 -3.433 1.00 0.23 \ ATOM 33 CD GLN D 4 4.478 -12.927 -4.253 1.00 0.23 \ ATOM 34 OE1 GLN D 4 4.061 -11.836 -4.626 1.00 0.23 \ ATOM 35 NE2 GLN D 4 5.695 -13.372 -4.541 1.00 0.23 \ ATOM 36 N HIS D 5 3.350 -10.962 0.219 1.00 -0.03 \ ATOM 37 CA HIS D 5 2.542 -10.215 1.173 1.00 -0.03 \ ATOM 38 C HIS D 5 1.784 -9.189 0.339 1.00 -0.03 \ ATOM 39 O HIS D 5 2.386 -8.240 -0.185 1.00 -0.03 \ ATOM 40 CB HIS D 5 3.460 -9.563 2.215 1.00 -0.03 \ ATOM 41 CG HIS D 5 2.748 -8.773 3.267 1.00 -0.03 \ ATOM 42 ND1 HIS D 5 1.426 -8.969 3.600 1.00 -0.03 \ ATOM 43 CD2 HIS D 5 3.216 -7.840 4.129 1.00 -0.03 \ ATOM 44 CE1 HIS D 5 1.098 -8.147 4.579 1.00 -0.03 \ ATOM 45 NE2 HIS D 5 2.168 -7.452 4.921 1.00 -0.03 \ ATOM 46 N LEU D 6 0.479 -9.422 0.157 1.00 1.17 \ ATOM 47 CA LEU D 6 -0.300 -8.682 -0.837 1.00 1.17 \ ATOM 48 C LEU D 6 -1.626 -8.227 -0.253 1.00 1.17 \ ATOM 49 O LEU D 6 -2.451 -9.052 0.157 1.00 1.17 \ ATOM 50 CB LEU D 6 -0.567 -9.540 -2.081 1.00 1.17 \ ATOM 51 CG LEU D 6 0.613 -10.165 -2.817 1.00 1.17 \ ATOM 52 CD1 LEU D 6 0.109 -11.255 -3.758 1.00 1.17 \ ATOM 53 CD2 LEU D 6 1.380 -9.105 -3.574 1.00 1.17 \ ATOM 54 N CYS D 7 -1.814 -6.906 -0.235 1.00 1.69 \ ATOM 55 CA CYS D 7 -3.038 -6.286 0.205 1.00 1.69 \ ATOM 56 C CYS D 7 -3.670 -5.488 -0.904 1.00 1.69 \ ATOM 57 O CYS D 7 -2.999 -5.007 -1.828 1.00 1.69 \ ATOM 58 CB CYS D 7 -2.764 -5.366 1.394 1.00 1.69 \ ATOM 59 SG CYS D 7 -2.100 -6.229 2.819 1.00 1.69 \ ATOM 60 N GLY D 8 -4.987 -5.349 -0.794 1.00 0.76 \ ATOM 61 CA GLY D 8 -5.767 -4.520 -1.687 1.00 0.76 \ ATOM 62 C GLY D 8 -5.573 -4.860 -3.145 1.00 0.76 \ ATOM 63 O GLY D 8 -5.575 -6.034 -3.542 1.00 0.76 \ ATOM 64 N SER D 9 -5.360 -3.821 -3.945 0.50 -0.47 \ ATOM 65 CA SER D 9 -5.210 -3.955 -5.387 0.50 -0.47 \ ATOM 66 C SER D 9 -3.990 -4.803 -5.798 0.50 -0.47 \ ATOM 67 O SER D 9 -3.964 -5.354 -6.900 0.50 -0.47 \ ATOM 68 CB SER D 9 -5.148 -2.566 -6.032 0.50 -0.47 \ ATOM 69 OG SER D 9 -4.060 -1.814 -5.552 0.50 -0.47 \ ATOM 70 N HIS D 10 -2.989 -4.898 -4.919 1.00 -0.23 \ ATOM 71 CA HIS D 10 -1.774 -5.676 -5.213 1.00 -0.23 \ ATOM 72 C HIS D 10 -2.068 -7.153 -5.330 1.00 -0.23 \ ATOM 73 O HIS D 10 -1.381 -7.843 -6.077 1.00 -0.23 \ ATOM 74 CB HIS D 10 -0.692 -5.447 -4.184 1.00 -0.23 \ ATOM 75 CG HIS D 10 -0.291 -4.015 -4.078 1.00 -0.23 \ ATOM 76 ND1 HIS D 10 0.414 -3.374 -5.072 1.00 -0.23 \ ATOM 77 CD2 HIS D 10 -0.542 -3.090 -3.126 1.00 -0.23 \ ATOM 78 CE1 HIS D 10 0.592 -2.109 -4.724 1.00 -0.23 \ ATOM 79 NE2 HIS D 10 0.032 -1.914 -3.547 1.00 -0.23 \ ATOM 80 N LEU D 11 -3.102 -7.632 -4.631 1.00 1.69 \ ATOM 81 CA LEU D 11 -3.513 -9.033 -4.774 1.00 1.69 \ ATOM 82 C LEU D 11 -4.090 -9.278 -6.173 1.00 1.69 \ ATOM 83 O LEU D 11 -3.793 -10.289 -6.828 1.00 1.69 \ ATOM 84 CB LEU D 11 -4.543 -9.407 -3.706 1.00 1.69 \ ATOM 85 CG LEU D 11 -4.982 -10.886 -3.780 1.00 1.69 \ ATOM 86 CD1 LEU D 11 -3.795 -11.846 -3.846 1.00 1.69 \ ATOM 87 CD2 LEU D 11 -5.829 -11.216 -2.610 1.00 1.69 \ ATOM 88 N VAL D 12 -4.913 -8.341 -6.629 1.00 0.76 \ ATOM 89 CA VAL D 12 -5.523 -8.434 -7.947 1.00 0.76 \ ATOM 90 C VAL D 12 -4.478 -8.389 -9.082 1.00 0.76 \ ATOM 91 O VAL D 12 -4.585 -9.137 -10.050 1.00 0.76 \ ATOM 92 CB VAL D 12 -6.622 -7.376 -8.123 1.00 0.76 \ ATOM 93 CG1 VAL D 12 -7.068 -7.302 -9.556 1.00 0.76 \ ATOM 94 CG2 VAL D 12 -7.788 -7.724 -7.201 1.00 0.76 \ ATOM 95 N GLU D 13 -3.461 -7.554 -8.924 1.00 0.64 \ ATOM 96 CA GLU D 13 -2.330 -7.546 -9.864 1.00 0.64 \ ATOM 97 C GLU D 13 -1.611 -8.895 -9.905 1.00 0.64 \ ATOM 98 O GLU D 13 -1.264 -9.386 -10.984 1.00 0.64 \ ATOM 99 CB GLU D 13 -1.334 -6.459 -9.481 1.00 0.64 \ ATOM 100 CG GLU D 13 -1.876 -5.059 -9.741 1.00 0.64 \ ATOM 101 CD GLU D 13 -1.782 -4.654 -11.220 1.00 0.64 \ ATOM 102 OE1 GLU D 13 -1.184 -5.409 -12.029 1.00 0.64 \ ATOM 103 OE2 GLU D 13 -2.304 -3.565 -11.564 1.00 0.64 \ ATOM 104 N ALA D 14 -1.371 -9.482 -8.734 1.00 0.02 \ ATOM 105 CA ALA D 14 -0.702 -10.786 -8.674 1.00 0.02 \ ATOM 106 C ALA D 14 -1.560 -11.875 -9.341 1.00 0.02 \ ATOM 107 O ALA D 14 -1.051 -12.709 -10.107 1.00 0.02 \ ATOM 108 CB ALA D 14 -0.363 -11.154 -7.232 1.00 0.02 \ ATOM 109 N LEU D 15 -2.861 -11.885 -9.064 1.00 1.69 \ ATOM 110 CA LEU D 15 -3.750 -12.867 -9.708 1.00 1.69 \ ATOM 111 C LEU D 15 -3.738 -12.735 -11.244 1.00 1.69 \ ATOM 112 O LEU D 15 -3.727 -13.739 -11.989 1.00 1.69 \ ATOM 113 CB LEU D 15 -5.183 -12.711 -9.185 1.00 1.69 \ ATOM 114 CG LEU D 15 -5.460 -13.267 -7.800 1.00 1.69 \ ATOM 115 CD1 LEU D 15 -6.818 -12.771 -7.303 1.00 1.69 \ ATOM 116 CD2 LEU D 15 -5.407 -14.798 -7.807 1.00 1.69 \ ATOM 117 N TYR D 16 -3.783 -11.491 -11.709 1.00 -0.21 \ ATOM 118 CA TYR D 16 -3.681 -11.190 -13.127 1.00 -0.21 \ ATOM 119 C TYR D 16 -2.405 -11.804 -13.761 1.00 -0.21 \ ATOM 120 O TYR D 16 -2.488 -12.452 -14.826 1.00 -0.21 \ ATOM 121 CB TYR D 16 -3.764 -9.675 -13.376 1.00 -0.21 \ ATOM 122 CG TYR D 16 -3.650 -9.348 -14.847 1.00 -0.21 \ ATOM 123 CD1 TYR D 16 -4.730 -9.523 -15.698 1.00 -0.21 \ ATOM 124 CD2 TYR D 16 -2.439 -8.923 -15.395 1.00 -0.21 \ ATOM 125 CE1 TYR D 16 -4.621 -9.291 -17.060 1.00 -0.21 \ ATOM 126 CE2 TYR D 16 -2.329 -8.680 -16.765 1.00 -0.21 \ ATOM 127 CZ TYR D 16 -3.422 -8.864 -17.580 1.00 -0.21 \ ATOM 128 OH TYR D 16 -3.329 -8.617 -18.934 1.00 -0.21 \ ATOM 129 N LEU D 17 -1.257 -11.635 -13.105 0.50 -0.24 \ ATOM 130 CA LEU D 17 0.014 -12.146 -13.636 0.50 -0.24 \ ATOM 131 C LEU D 17 0.098 -13.662 -13.552 0.50 -0.24 \ ATOM 132 O LEU D 17 0.657 -14.316 -14.445 0.50 -0.24 \ ATOM 133 CB LEU D 17 1.197 -11.524 -12.899 0.50 -0.24 \ ATOM 134 CG LEU D 17 1.418 -10.046 -13.219 0.50 -0.24 \ ATOM 135 CD1 LEU D 17 2.442 -9.451 -12.263 0.50 -0.24 \ ATOM 136 CD2 LEU D 17 1.831 -9.870 -14.673 0.50 -0.24 \ ATOM 137 N VAL D 18 -0.444 -14.227 -12.477 1.00 0.30 \ ATOM 138 CA VAL D 18 -0.432 -15.678 -12.303 1.00 0.30 \ ATOM 139 C VAL D 18 -1.349 -16.410 -13.295 1.00 0.30 \ ATOM 140 O VAL D 18 -0.985 -17.474 -13.821 1.00 0.30 \ ATOM 141 CB VAL D 18 -0.779 -16.053 -10.837 1.00 0.30 \ ATOM 142 CG1 VAL D 18 -1.056 -17.536 -10.687 1.00 0.30 \ ATOM 143 CG2 VAL D 18 0.364 -15.598 -9.892 1.00 0.30 \ ATOM 144 N CYS D 19 -2.536 -15.858 -13.539 1.00 1.69 \ ATOM 145 CA CYS D 19 -3.587 -16.572 -14.282 1.00 1.69 \ ATOM 146 C CYS D 19 -3.604 -16.285 -15.789 1.00 1.69 \ ATOM 147 O CYS D 19 -4.030 -17.123 -16.587 1.00 1.69 \ ATOM 148 CB CYS D 19 -4.948 -16.261 -13.652 1.00 1.69 \ ATOM 149 SG CYS D 19 -5.097 -16.801 -11.937 1.00 1.69 \ ATOM 150 N GLY D 20 -3.137 -15.109 -16.170 1.00 -0.12 \ ATOM 151 CA GLY D 20 -3.048 -14.735 -17.576 1.00 -0.12 \ ATOM 152 C GLY D 20 -4.377 -14.887 -18.282 1.00 -0.12 \ ATOM 153 O GLY D 20 -5.419 -14.431 -17.783 1.00 -0.12 \ ATOM 154 N GLU D 21 -4.355 -15.584 -19.419 1.00 0.18 \ ATOM 155 CA GLU D 21 -5.540 -15.669 -20.272 1.00 0.18 \ ATOM 156 C GLU D 21 -6.642 -16.523 -19.672 1.00 0.18 \ ATOM 157 O GLU D 21 -7.782 -16.453 -20.116 1.00 0.18 \ ATOM 158 CB GLU D 21 -5.174 -16.166 -21.680 1.00 0.18 \ ATOM 159 CG GLU D 21 -4.537 -17.557 -21.747 1.00 0.18 \ ATOM 160 CD GLU D 21 -4.005 -17.873 -23.139 1.00 0.18 \ ATOM 161 OE1 GLU D 21 -4.123 -19.045 -23.569 1.00 0.18 \ ATOM 162 OE2 GLU D 21 -3.486 -16.942 -23.801 1.00 0.18 \ ATOM 163 N ARG D 22 -6.312 -17.321 -18.657 1.00 -0.58 \ ATOM 164 CA ARG D 22 -7.318 -18.107 -17.955 1.00 -0.58 \ ATOM 165 C ARG D 22 -8.290 -17.215 -17.189 1.00 -0.58 \ ATOM 166 O ARG D 22 -9.438 -17.602 -16.966 1.00 -0.58 \ ATOM 167 CB ARG D 22 -6.678 -19.081 -16.968 1.00 -0.58 \ ATOM 168 CG ARG D 22 -5.767 -20.123 -17.592 1.00 -0.58 \ ATOM 169 CD ARG D 22 -5.147 -21.001 -16.517 1.00 -0.58 \ ATOM 170 NE ARG D 22 -3.988 -20.363 -15.878 1.00 -0.58 \ ATOM 171 CZ ARG D 22 -3.294 -20.895 -14.866 1.00 -0.58 \ ATOM 172 NH1 ARG D 22 -2.255 -20.241 -14.356 1.00 -0.58 \ ATOM 173 NH2 ARG D 22 -3.639 -22.083 -14.354 1.00 -0.58 \ ATOM 174 N GLY D 23 -7.819 -16.036 -16.784 1.00 1.69 \ ATOM 175 CA GLY D 23 -8.573 -15.167 -15.889 1.00 1.69 \ ATOM 176 C GLY D 23 -8.677 -15.787 -14.498 1.00 1.69 \ ATOM 177 O GLY D 23 -8.074 -16.816 -14.220 1.00 1.69 \ ATOM 178 N PHE D 24 -9.493 -15.173 -13.649 1.00 1.16 \ ATOM 179 CA PHE D 24 -9.546 -15.504 -12.254 1.00 1.16 \ ATOM 180 C PHE D 24 -10.785 -14.943 -11.597 1.00 1.16 \ ATOM 181 O PHE D 24 -11.494 -14.102 -12.168 1.00 1.16 \ ATOM 182 CB PHE D 24 -8.307 -14.967 -11.530 1.00 1.16 \ ATOM 183 CG PHE D 24 -8.166 -13.458 -11.554 1.00 1.16 \ ATOM 184 CD1 PHE D 24 -7.458 -12.832 -12.562 1.00 1.16 \ ATOM 185 CD2 PHE D 24 -8.721 -12.682 -10.537 1.00 1.16 \ ATOM 186 CE1 PHE D 24 -7.303 -11.455 -12.565 1.00 1.16 \ ATOM 187 CE2 PHE D 24 -8.575 -11.308 -10.523 1.00 1.16 \ ATOM 188 CZ PHE D 24 -7.851 -10.689 -11.544 1.00 1.16 \ ATOM 189 N PHE D 25 -11.048 -15.416 -10.389 0.50 0.51 \ ATOM 190 CA PHE D 25 -12.090 -14.820 -9.581 0.50 0.51 \ ATOM 191 C PHE D 25 -11.517 -14.243 -8.289 0.50 0.51 \ ATOM 192 O PHE D 25 -10.651 -14.843 -7.636 0.50 0.51 \ ATOM 193 CB PHE D 25 -13.242 -15.803 -9.319 0.50 0.51 \ ATOM 194 CG PHE D 25 -12.842 -17.072 -8.602 0.50 0.51 \ ATOM 195 CD1 PHE D 25 -12.346 -18.160 -9.311 0.50 0.51 \ ATOM 196 CD2 PHE D 25 -13.021 -17.198 -7.231 0.50 0.51 \ ATOM 197 CE1 PHE D 25 -11.999 -19.334 -8.655 0.50 0.51 \ ATOM 198 CE2 PHE D 25 -12.684 -18.373 -6.581 0.50 0.51 \ ATOM 199 CZ PHE D 25 -12.170 -19.435 -7.296 0.50 0.51 \ ATOM 200 N TYR D 26 -12.013 -13.062 -7.948 1.00 -0.23 \ ATOM 201 CA TYR D 26 -11.574 -12.323 -6.769 1.00 -0.23 \ ATOM 202 C TYR D 26 -12.733 -12.346 -5.776 1.00 -0.23 \ ATOM 203 O TYR D 26 -13.780 -11.740 -6.029 1.00 -0.23 \ ATOM 204 CB TYR D 26 -11.190 -10.889 -7.165 1.00 -0.23 \ ATOM 205 CG TYR D 26 -10.827 -10.028 -5.987 1.00 -0.23 \ ATOM 206 CD1 TYR D 26 -11.676 -9.011 -5.555 1.00 -0.23 \ ATOM 207 CD2 TYR D 26 -9.635 -10.239 -5.283 1.00 -0.23 \ ATOM 208 CE1 TYR D 26 -11.346 -8.210 -4.447 1.00 -0.23 \ ATOM 209 CE2 TYR D 26 -9.299 -9.444 -4.187 1.00 -0.23 \ ATOM 210 CZ TYR D 26 -10.160 -8.440 -3.773 1.00 -0.23 \ ATOM 211 OH TYR D 26 -9.846 -7.650 -2.668 1.00 -0.23 \ ATOM 212 N THR D 27 -12.546 -13.040 -4.659 1.00 -0.98 \ ATOM 213 CA THR D 27 -13.610 -13.237 -3.701 1.00 -0.98 \ ATOM 214 C THR D 27 -13.198 -12.977 -2.258 1.00 -0.98 \ ATOM 215 O THR D 27 -12.821 -13.841 -1.577 1.00 -0.98 \ ATOM 216 CB THR D 27 -14.208 -14.670 -3.851 1.00 -0.98 \ ATOM 217 OG1 THR D 27 -14.737 -14.803 -5.162 1.00 -0.98 \ ATOM 218 CG2 THR D 27 -15.297 -14.895 -2.877 1.00 -0.98 \ ATOM 219 N PRO D 28 -13.254 -11.723 -1.853 1.00 -0.78 \ ATOM 220 CA PRO D 28 -12.941 -11.374 -0.477 1.00 -0.78 \ ATOM 221 C PRO D 28 -14.020 -11.831 0.495 1.00 -0.78 \ ATOM 222 O PRO D 28 -15.154 -12.132 0.085 1.00 -0.78 \ ATOM 223 CB PRO D 28 -12.834 -9.841 -0.498 1.00 -0.78 \ ATOM 224 CG PRO D 28 -13.418 -9.399 -1.753 1.00 -0.78 \ ATOM 225 CD PRO D 28 -13.635 -10.546 -2.657 1.00 -0.78 \ ATOM 226 N LYS D 29 -13.674 -11.884 1.777 1.00 -0.90 \ ATOM 227 CA LYS D 29 -14.616 -12.303 2.808 1.00 -0.90 \ ATOM 228 C LYS D 29 -15.686 -11.242 3.041 1.00 -0.90 \ ATOM 229 O LYS D 29 -15.439 -10.049 2.867 1.00 -0.90 \ ATOM 230 CB LYS D 29 -13.881 -12.605 4.115 1.00 -0.90 \ ATOM 231 CG LYS D 29 -13.977 -14.054 4.562 1.00 -0.90 \ ATOM 232 CD LYS D 29 -13.315 -14.261 5.915 1.00 -0.90 \ ATOM 233 CE LYS D 29 -14.140 -13.642 7.032 1.00 -0.90 \ ATOM 234 NZ LYS D 29 -13.387 -13.592 8.315 1.00 -0.90 \ ATOM 235 N THR D 30 -16.886 -11.593 3.448 1.00 -1.45 \ ATOM 236 CA THR D 30 -17.901 -10.608 3.761 1.00 -1.45 \ ATOM 237 C THR D 30 -17.684 -9.240 3.185 1.00 -1.45 \ ATOM 238 O THR D 30 -18.048 -9.026 2.041 1.00 -1.45 \ ATOM 239 CB THR D 30 -18.192 -10.463 5.266 1.00 -1.45 \ ATOM 240 OG1 THR D 30 -18.538 -9.108 5.563 1.00 -1.45 \ ATOM 241 CG2 THR D 30 -17.100 -10.971 6.048 1.00 -1.45 \ """, "e4f8fD1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e4f8fD1_csv", state=0, origin=1) cmd.zoom("e4f8fD1_csv", animate=-1)