cmd.read_pdbstr("""\ ATOM 1 N PHE D 1 18.432 11.264 -4.380 1.00 -1.00 \ ATOM 2 CA PHE D 1 16.993 11.132 -4.708 1.00 -1.00 \ ATOM 3 C PHE D 1 16.725 11.085 -6.224 1.00 -1.00 \ ATOM 4 O PHE D 1 17.102 12.006 -6.952 1.00 -1.00 \ ATOM 5 CB PHE D 1 16.181 12.285 -4.106 1.00 -1.00 \ ATOM 6 CG PHE D 1 16.157 12.272 -2.575 1.00 -1.00 \ ATOM 7 CD1 PHE D 1 16.073 11.073 -1.881 1.00 -1.00 \ ATOM 8 CD2 PHE D 1 16.228 13.471 -1.883 1.00 -1.00 \ ATOM 9 CE1 PHE D 1 16.065 11.068 -0.493 1.00 -1.00 \ ATOM 10 CE2 PHE D 1 16.223 13.471 -0.491 1.00 -1.00 \ ATOM 11 CZ PHE D 1 16.146 12.270 0.202 1.00 -1.00 \ ATOM 12 N VAL D 2 15.912 10.128 -6.635 1.00 -1.00 \ ATOM 13 CA VAL D 2 15.691 9.859 -8.075 1.00 -1.00 \ ATOM 14 C VAL D 2 14.347 10.408 -8.562 1.00 -1.00 \ ATOM 15 O VAL D 2 13.443 10.688 -7.770 1.00 -1.00 \ ATOM 16 CB VAL D 2 15.779 8.357 -8.411 1.00 -1.00 \ ATOM 17 CG1 VAL D 2 17.192 7.812 -8.197 1.00 -1.00 \ ATOM 18 CG2 VAL D 2 14.772 7.502 -7.632 1.00 -1.00 \ ATOM 19 N ASN D 3 14.291 10.624 -9.866 1.00 -0.48 \ ATOM 20 CA ASN D 3 13.014 10.737 -10.588 1.00 -0.48 \ ATOM 21 C ASN D 3 12.328 9.376 -10.734 1.00 -0.48 \ ATOM 22 O ASN D 3 12.973 8.357 -10.970 1.00 -0.48 \ ATOM 23 CB ASN D 3 13.256 11.370 -11.957 1.00 -0.48 \ ATOM 24 CG ASN D 3 13.561 12.869 -11.889 1.00 -0.48 \ ATOM 25 OD1 ASN D 3 13.992 13.492 -12.841 1.00 -0.48 \ ATOM 26 ND2 ASN D 3 13.327 13.471 -10.744 1.00 -0.48 \ ATOM 27 N GLN D 4 11.040 9.389 -10.417 1.00 0.23 \ ATOM 28 CA GLN D 4 10.175 8.195 -10.453 1.00 0.23 \ ATOM 29 C GLN D 4 8.844 8.529 -11.135 1.00 0.23 \ ATOM 30 O GLN D 4 8.408 9.679 -11.141 1.00 0.23 \ ATOM 31 CB GLN D 4 9.898 7.717 -9.022 1.00 0.23 \ ATOM 32 CG GLN D 4 11.166 7.239 -8.308 1.00 0.23 \ ATOM 33 CD GLN D 4 11.120 7.484 -6.795 1.00 0.23 \ ATOM 34 OE1 GLN D 4 10.404 8.320 -6.265 1.00 0.23 \ ATOM 35 NE2 GLN D 4 11.916 6.738 -6.060 1.00 0.23 \ ATOM 36 N HIS D 5 8.218 7.477 -11.653 1.00 -0.03 \ ATOM 37 CA HIS D 5 6.862 7.540 -12.219 1.00 -0.03 \ ATOM 38 C HIS D 5 5.823 7.102 -11.175 1.00 -0.03 \ ATOM 39 O HIS D 5 5.775 5.942 -10.764 1.00 -0.03 \ ATOM 40 CB HIS D 5 6.792 6.668 -13.473 1.00 -0.03 \ ATOM 41 CG HIS D 5 6.878 7.533 -14.735 1.00 -0.03 \ ATOM 42 ND1 HIS D 5 5.863 8.204 -15.238 1.00 -0.03 \ ATOM 43 CD2 HIS D 5 7.911 7.652 -15.564 1.00 -0.03 \ ATOM 44 CE1 HIS D 5 6.254 8.733 -16.394 1.00 -0.03 \ ATOM 45 NE2 HIS D 5 7.525 8.402 -16.591 1.00 -0.03 \ ATOM 46 N LEU D 6 5.082 8.085 -10.675 1.00 1.17 \ ATOM 47 CA LEU D 6 4.054 7.903 -9.630 1.00 1.17 \ ATOM 48 C LEU D 6 2.652 8.260 -10.142 1.00 1.17 \ ATOM 49 O LEU D 6 2.336 9.418 -10.404 1.00 1.17 \ ATOM 50 CB LEU D 6 4.398 8.773 -8.418 1.00 1.17 \ ATOM 51 CG LEU D 6 5.511 8.192 -7.544 1.00 1.17 \ ATOM 52 CD1 LEU D 6 6.235 9.335 -6.833 1.00 1.17 \ ATOM 53 CD2 LEU D 6 4.919 7.228 -6.510 1.00 1.17 \ ATOM 54 N CYS D 7 1.805 7.237 -10.192 1.00 1.69 \ ATOM 55 CA CYS D 7 0.427 7.354 -10.711 1.00 1.69 \ ATOM 56 C CYS D 7 -0.614 6.884 -9.684 1.00 1.69 \ ATOM 57 O CYS D 7 -0.413 5.879 -8.990 1.00 1.69 \ ATOM 58 CB CYS D 7 0.290 6.514 -11.984 1.00 1.69 \ ATOM 59 SG CYS D 7 1.362 7.022 -13.377 1.00 1.69 \ ATOM 60 N GLY D 8 -1.742 7.606 -9.685 1.00 0.76 \ ATOM 61 CA GLY D 8 -2.924 7.307 -8.847 1.00 0.76 \ ATOM 62 C GLY D 8 -2.626 7.346 -7.343 1.00 0.76 \ ATOM 63 O GLY D 8 -1.641 7.935 -6.910 1.00 0.76 \ ATOM 64 N SER D 9 -3.354 6.495 -6.625 1.00 -0.47 \ ATOM 65 CA SER D 9 -3.231 6.304 -5.164 1.00 -0.47 \ ATOM 66 C SER D 9 -1.794 6.021 -4.694 1.00 -0.47 \ ATOM 67 O SER D 9 -1.401 6.434 -3.606 1.00 -0.47 \ ATOM 68 CB SER D 9 -4.137 5.160 -4.713 1.00 -0.47 \ ATOM 69 OG SER D 9 -3.746 3.920 -5.312 1.00 -0.47 \ ATOM 70 N HIS D 10 -0.943 5.503 -5.567 1.00 -0.23 \ ATOM 71 CA HIS D 10 0.455 5.344 -5.193 1.00 -0.23 \ ATOM 72 C HIS D 10 1.103 6.673 -4.861 1.00 -0.23 \ ATOM 73 O HIS D 10 1.914 6.771 -3.914 1.00 -0.23 \ ATOM 74 CB HIS D 10 1.230 4.646 -6.304 1.00 -0.23 \ ATOM 75 CG HIS D 10 0.770 3.233 -6.573 1.00 -0.23 \ ATOM 76 ND1 HIS D 10 0.834 2.263 -5.644 1.00 -0.23 \ ATOM 77 CD2 HIS D 10 0.228 2.649 -7.716 1.00 -0.23 \ ATOM 78 CE1 HIS D 10 0.358 1.115 -6.162 1.00 -0.23 \ ATOM 79 NE2 HIS D 10 -0.013 1.353 -7.430 1.00 -0.23 \ ATOM 80 N LEU D 11 0.760 7.703 -5.630 1.00 1.69 \ ATOM 81 CA LEU D 11 1.317 9.077 -5.505 1.00 1.69 \ ATOM 82 C LEU D 11 1.081 9.739 -4.139 1.00 1.69 \ ATOM 83 O LEU D 11 2.005 10.300 -3.553 1.00 1.69 \ ATOM 84 CB LEU D 11 0.754 9.954 -6.634 1.00 1.69 \ ATOM 85 CG LEU D 11 1.191 11.429 -6.645 1.00 1.69 \ ATOM 86 CD1 LEU D 11 2.714 11.596 -6.652 1.00 1.69 \ ATOM 87 CD2 LEU D 11 0.605 12.124 -7.874 1.00 1.69 \ ATOM 88 N VAL D 12 -0.084 9.492 -3.560 1.00 0.76 \ ATOM 89 CA VAL D 12 -0.472 10.106 -2.281 1.00 0.76 \ ATOM 90 C VAL D 12 0.460 9.717 -1.114 1.00 0.76 \ ATOM 91 O VAL D 12 0.605 10.485 -0.181 1.00 0.76 \ ATOM 92 CB VAL D 12 -1.947 9.804 -1.988 1.00 0.76 \ ATOM 93 CG1 VAL D 12 -2.904 10.274 -3.086 1.00 0.76 \ ATOM 94 CG2 VAL D 12 -2.216 8.342 -1.661 1.00 0.76 \ ATOM 95 N GLU D 13 1.058 8.522 -1.176 1.00 0.64 \ ATOM 96 CA GLU D 13 2.049 8.053 -0.182 1.00 0.64 \ ATOM 97 C GLU D 13 3.416 8.710 -0.348 1.00 0.64 \ ATOM 98 O GLU D 13 4.118 8.899 0.636 1.00 0.64 \ ATOM 99 CB GLU D 13 2.219 6.534 -0.242 1.00 0.64 \ ATOM 100 CG GLU D 13 1.159 5.794 0.575 1.00 0.64 \ ATOM 101 CD GLU D 13 -0.251 6.182 0.151 1.00 0.64 \ ATOM 102 OE1 GLU D 13 -0.845 7.039 0.828 1.00 0.64 \ ATOM 103 OE2 GLU D 13 -0.668 5.631 -0.881 1.00 0.64 \ ATOM 104 N ALA D 14 3.775 8.992 -1.600 1.00 0.02 \ ATOM 105 CA ALA D 14 4.973 9.789 -1.909 1.00 0.02 \ ATOM 106 C ALA D 14 4.791 11.212 -1.352 1.00 0.02 \ ATOM 107 O ALA D 14 5.466 11.549 -0.386 1.00 0.02 \ ATOM 108 CB ALA D 14 5.204 9.806 -3.419 1.00 0.02 \ ATOM 109 N LEU D 15 3.634 11.799 -1.666 1.00 1.69 \ ATOM 110 CA LEU D 15 3.195 13.111 -1.140 1.00 1.69 \ ATOM 111 C LEU D 15 3.095 13.105 0.396 1.00 1.69 \ ATOM 112 O LEU D 15 3.734 13.919 1.060 1.00 1.69 \ ATOM 113 CB LEU D 15 1.830 13.468 -1.738 1.00 1.69 \ ATOM 114 CG LEU D 15 1.859 13.714 -3.250 1.00 1.69 \ ATOM 115 CD1 LEU D 15 0.453 13.506 -3.810 1.00 1.69 \ ATOM 116 CD2 LEU D 15 2.313 15.143 -3.559 1.00 1.69 \ ATOM 117 N TYR D 16 2.502 12.038 0.934 1.00 -0.21 \ ATOM 118 CA TYR D 16 2.395 11.796 2.384 1.00 -0.21 \ ATOM 119 C TYR D 16 3.777 11.766 3.039 1.00 -0.21 \ ATOM 120 O TYR D 16 4.063 12.624 3.863 1.00 -0.21 \ ATOM 121 CB TYR D 16 1.630 10.495 2.650 1.00 -0.21 \ ATOM 122 CG TYR D 16 1.403 10.235 4.141 1.00 -0.21 \ ATOM 123 CD1 TYR D 16 0.644 11.112 4.890 1.00 -0.21 \ ATOM 124 CD2 TYR D 16 1.984 9.135 4.743 1.00 -0.21 \ ATOM 125 CE1 TYR D 16 0.464 10.883 6.251 1.00 -0.21 \ ATOM 126 CE2 TYR D 16 1.801 8.900 6.102 1.00 -0.21 \ ATOM 127 CZ TYR D 16 1.028 9.774 6.852 1.00 -0.21 \ ATOM 128 OH TYR D 16 0.742 9.503 8.150 1.00 -0.21 \ ATOM 129 N LEU D 17 4.663 10.960 2.459 1.00 -0.24 \ ATOM 130 CA LEU D 17 6.053 10.806 2.917 1.00 -0.24 \ ATOM 131 C LEU D 17 6.812 12.144 2.931 1.00 -0.24 \ ATOM 132 O LEU D 17 7.314 12.535 3.979 1.00 -0.24 \ ATOM 133 CB LEU D 17 6.758 9.794 2.004 1.00 -0.24 \ ATOM 134 CG LEU D 17 8.195 9.461 2.417 1.00 -0.24 \ ATOM 135 CD1 LEU D 17 8.233 8.694 3.742 1.00 -0.24 \ ATOM 136 CD2 LEU D 17 8.875 8.663 1.304 1.00 -0.24 \ ATOM 137 N VAL D 18 6.726 12.881 1.824 1.00 0.30 \ ATOM 138 CA VAL D 18 7.457 14.152 1.639 1.00 0.30 \ ATOM 139 C VAL D 18 6.976 15.240 2.615 1.00 0.30 \ ATOM 140 O VAL D 18 7.794 15.901 3.245 1.00 0.30 \ ATOM 141 CB VAL D 18 7.340 14.646 0.183 1.00 0.30 \ ATOM 142 CG1 VAL D 18 8.215 15.875 -0.082 1.00 0.30 \ ATOM 143 CG2 VAL D 18 7.769 13.561 -0.801 1.00 0.30 \ ATOM 144 N CYS D 19 5.659 15.346 2.778 1.00 1.69 \ ATOM 145 CA CYS D 19 5.068 16.462 3.539 1.00 1.69 \ ATOM 146 C CYS D 19 4.879 16.140 5.033 1.00 1.69 \ ATOM 147 O CYS D 19 5.093 16.996 5.891 1.00 1.69 \ ATOM 148 CB CYS D 19 3.724 16.862 2.921 1.00 1.69 \ ATOM 149 SG CYS D 19 3.717 17.231 1.124 1.00 1.69 \ ATOM 150 N GLY D 20 4.424 14.910 5.319 1.00 -0.12 \ ATOM 151 CA GLY D 20 4.079 14.460 6.681 1.00 -0.12 \ ATOM 152 C GLY D 20 3.008 15.363 7.308 1.00 -0.12 \ ATOM 153 O GLY D 20 1.955 15.608 6.722 1.00 -0.12 \ ATOM 154 N GLU D 21 3.456 16.040 8.361 1.00 0.18 \ ATOM 155 CA GLU D 21 2.630 16.915 9.211 1.00 0.18 \ ATOM 156 C GLU D 21 2.084 18.183 8.532 1.00 0.18 \ ATOM 157 O GLU D 21 0.992 18.619 8.880 1.00 0.18 \ ATOM 158 CB GLU D 21 3.420 17.283 10.470 1.00 0.18 \ ATOM 159 CG GLU D 21 4.615 18.214 10.211 1.00 0.18 \ ATOM 160 CD GLU D 21 5.405 18.592 11.468 1.00 0.18 \ ATOM 161 OE1 GLU D 21 4.897 18.357 12.587 1.00 0.18 \ ATOM 162 OE2 GLU D 21 6.548 19.051 11.271 1.00 0.18 \ ATOM 163 N ARG D 22 2.852 18.770 7.606 1.00 -0.58 \ ATOM 164 CA ARG D 22 2.379 19.956 6.860 1.00 -0.58 \ ATOM 165 C ARG D 22 1.089 19.663 6.079 1.00 -0.58 \ ATOM 166 O ARG D 22 0.245 20.540 5.897 1.00 -0.58 \ ATOM 167 CB ARG D 22 3.441 20.469 5.884 1.00 -0.58 \ ATOM 168 CG ARG D 22 4.689 20.984 6.604 1.00 -0.58 \ ATOM 169 CD ARG D 22 5.563 21.784 5.640 1.00 -0.58 \ ATOM 170 NE ARG D 22 5.004 23.137 5.450 1.00 -0.58 \ ATOM 171 CZ ARG D 22 5.634 24.282 5.728 1.00 -0.58 \ ATOM 172 NH1 ARG D 22 6.865 24.281 6.219 1.00 -0.58 \ ATOM 173 NH2 ARG D 22 5.045 25.450 5.508 1.00 -0.58 \ ATOM 174 N GLY D 23 0.927 18.375 5.734 1.00 1.69 \ ATOM 175 CA GLY D 23 -0.145 17.916 4.842 1.00 1.69 \ ATOM 176 C GLY D 23 0.085 18.489 3.443 1.00 1.69 \ ATOM 177 O GLY D 23 1.076 19.158 3.160 1.00 1.69 \ ATOM 178 N PHE D 24 -0.892 18.240 2.587 1.00 1.16 \ ATOM 179 CA PHE D 24 -0.771 18.597 1.168 1.00 1.16 \ ATOM 180 C PHE D 24 -2.150 18.693 0.526 1.00 1.16 \ ATOM 181 O PHE D 24 -3.151 18.263 1.098 1.00 1.16 \ ATOM 182 CB PHE D 24 0.085 17.555 0.429 1.00 1.16 \ ATOM 183 CG PHE D 24 -0.340 16.110 0.710 1.00 1.16 \ ATOM 184 CD1 PHE D 24 -1.406 15.557 0.026 1.00 1.16 \ ATOM 185 CD2 PHE D 24 0.350 15.356 1.647 1.00 1.16 \ ATOM 186 CE1 PHE D 24 -1.760 14.239 0.301 1.00 1.16 \ ATOM 187 CE2 PHE D 24 -0.028 14.046 1.915 1.00 1.16 \ ATOM 188 CZ PHE D 24 -1.096 13.490 1.246 1.00 1.16 \ ATOM 189 N PHE D 25 -2.190 19.391 -0.590 1.00 0.51 \ ATOM 190 CA PHE D 25 -3.312 19.205 -1.513 1.00 0.51 \ ATOM 191 C PHE D 25 -2.920 18.253 -2.652 1.00 0.51 \ ATOM 192 O PHE D 25 -1.768 18.145 -3.066 1.00 0.51 \ ATOM 193 CB PHE D 25 -3.773 20.558 -2.046 1.00 0.51 \ ATOM 194 CG PHE D 25 -2.761 21.235 -2.964 1.00 0.51 \ ATOM 195 CD1 PHE D 25 -2.796 20.951 -4.317 1.00 0.51 \ ATOM 196 CD2 PHE D 25 -1.821 22.105 -2.445 1.00 0.51 \ ATOM 197 CE1 PHE D 25 -1.882 21.551 -5.171 1.00 0.51 \ ATOM 198 CE2 PHE D 25 -0.899 22.701 -3.301 1.00 0.51 \ ATOM 199 CZ PHE D 25 -0.931 22.423 -4.660 1.00 0.51 \ ATOM 200 N TYR D 26 -3.904 17.453 -3.025 1.00 -0.23 \ ATOM 201 CA TYR D 26 -3.845 16.653 -4.256 1.00 -0.23 \ ATOM 202 C TYR D 26 -4.884 17.197 -5.240 1.00 -0.23 \ ATOM 203 O TYR D 26 -6.085 17.154 -4.978 1.00 -0.23 \ ATOM 204 CB TYR D 26 -4.087 15.180 -3.929 1.00 -0.23 \ ATOM 205 CG TYR D 26 -4.161 14.303 -5.179 1.00 -0.23 \ ATOM 206 CD1 TYR D 26 -2.998 13.900 -5.810 1.00 -0.23 \ ATOM 207 CD2 TYR D 26 -5.398 13.913 -5.663 1.00 -0.23 \ ATOM 208 CE1 TYR D 26 -3.074 13.098 -6.944 1.00 -0.23 \ ATOM 209 CE2 TYR D 26 -5.481 13.110 -6.796 1.00 -0.23 \ ATOM 210 CZ TYR D 26 -4.314 12.713 -7.439 1.00 -0.23 \ ATOM 211 OH TYR D 26 -4.384 11.903 -8.529 1.00 -0.23 \ ATOM 212 N THR D 27 -4.364 17.788 -6.306 1.00 -0.98 \ ATOM 213 CA THR D 27 -5.180 18.440 -7.349 1.00 -0.98 \ ATOM 214 C THR D 27 -4.873 17.885 -8.751 1.00 -0.98 \ ATOM 215 O THR D 27 -3.861 18.230 -9.361 1.00 -0.98 \ ATOM 216 CB THR D 27 -5.000 19.962 -7.340 1.00 -0.98 \ ATOM 217 OG1 THR D 27 -3.603 20.260 -7.400 1.00 -0.98 \ ATOM 218 CG2 THR D 27 -5.706 20.622 -6.152 1.00 -0.98 \ ATOM 219 N PRO D 28 -5.688 16.929 -9.205 1.00 -0.78 \ ATOM 220 CA PRO D 28 -5.690 16.485 -10.611 1.00 -0.78 \ ATOM 221 C PRO D 28 -6.062 17.602 -11.598 1.00 -0.78 \ ATOM 222 O PRO D 28 -5.304 17.861 -12.524 1.00 -0.78 \ ATOM 223 CB PRO D 28 -6.662 15.303 -10.672 1.00 -0.78 \ ATOM 224 CG PRO D 28 -7.464 15.380 -9.372 1.00 -0.78 \ ATOM 225 CD PRO D 28 -6.508 16.028 -8.377 1.00 -0.78 \ ATOM 226 N LYS D 29 -7.101 18.369 -11.252 1.00 -0.90 \ ATOM 227 CA LYS D 29 -7.657 19.433 -12.112 1.00 -0.90 \ ATOM 228 C LYS D 29 -6.686 20.600 -12.361 1.00 -0.90 \ ATOM 229 O LYS D 29 -6.597 21.115 -13.468 1.00 -0.90 \ ATOM 230 CB LYS D 29 -8.955 19.967 -11.495 1.00 -0.90 \ ATOM 231 CG LYS D 29 -10.058 18.908 -11.401 1.00 -0.90 \ ATOM 232 CD LYS D 29 -11.305 19.498 -10.740 1.00 -0.90 \ ATOM 233 CE LYS D 29 -12.460 18.495 -10.742 1.00 -0.90 \ ATOM 234 NZ LYS D 29 -13.695 19.106 -10.226 1.00 -0.90 \ ATOM 235 N ALA D 30 -5.935 20.984 -11.321 1.00 -1.45 \ ATOM 236 CA ALA D 30 -4.944 22.076 -11.415 1.00 -1.45 \ ATOM 237 C ALA D 30 -3.792 21.790 -12.400 1.00 -1.45 \ ATOM 238 O ALA D 30 -3.319 20.626 -12.415 1.00 -1.45 \ ATOM 239 CB ALA D 30 -4.383 22.369 -10.021 1.00 -1.45 \ ATOM 240 OXT ALA D 30 -3.313 22.769 -13.007 1.00 -1.45 \ """, "e4idwD1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e4idwD1_csv", state=0, origin=1) cmd.zoom("e4idwD1_csv", animate=-1)