cmd.read_pdbstr("""\ ATOM 1 N PHE D 1 18.327 -11.091 3.527 1.00 -1.00 \ ATOM 2 CA PHE D 1 16.983 -10.858 4.050 1.00 -1.00 \ ATOM 3 C PHE D 1 16.981 -10.699 5.577 1.00 -1.00 \ ATOM 4 O PHE D 1 17.878 -11.184 6.269 1.00 -1.00 \ ATOM 5 CB PHE D 1 16.022 -11.969 3.602 1.00 -1.00 \ ATOM 6 CG PHE D 1 16.029 -12.214 2.107 1.00 -1.00 \ ATOM 7 CD1 PHE D 1 16.325 -13.469 1.595 1.00 -1.00 \ ATOM 8 CD2 PHE D 1 15.766 -11.179 1.215 1.00 -1.00 \ ATOM 9 CE1 PHE D 1 16.339 -13.689 0.227 1.00 -1.00 \ ATOM 10 CE2 PHE D 1 15.783 -11.395 -0.157 1.00 -1.00 \ ATOM 11 CZ PHE D 1 16.071 -12.647 -0.652 1.00 -1.00 \ ATOM 12 N VAL D 2 15.972 -10.002 6.090 1.00 -1.00 \ ATOM 13 CA VAL D 2 15.856 -9.728 7.519 1.00 -1.00 \ ATOM 14 C VAL D 2 14.465 -10.089 8.046 1.00 -1.00 \ ATOM 15 O VAL D 2 13.533 -10.314 7.267 1.00 -1.00 \ ATOM 16 CB VAL D 2 16.109 -8.237 7.816 1.00 -1.00 \ ATOM 17 CG1 VAL D 2 17.505 -7.829 7.374 1.00 -1.00 \ ATOM 18 CG2 VAL D 2 15.061 -7.382 7.128 1.00 -1.00 \ ATOM 19 N ASN D 3 14.334 -10.153 9.369 1.00 -0.48 \ ATOM 20 CA ASN D 3 13.028 -10.273 10.008 1.00 -0.48 \ ATOM 21 C ASN D 3 12.418 -8.885 10.221 1.00 -0.48 \ ATOM 22 O ASN D 3 13.153 -7.920 10.425 1.00 -0.48 \ ATOM 23 CB ASN D 3 13.157 -10.969 11.367 1.00 -0.48 \ ATOM 24 CG ASN D 3 13.910 -12.288 11.295 1.00 -0.48 \ ATOM 25 OD1 ASN D 3 14.023 -12.906 10.235 1.00 -0.48 \ ATOM 26 ND2 ASN D 3 14.423 -12.731 12.439 1.00 -0.48 \ ATOM 27 N GLN D 4 11.089 -8.780 10.176 1.00 0.23 \ ATOM 28 CA GLN D 4 10.378 -7.536 10.541 1.00 0.23 \ ATOM 29 C GLN D 4 8.926 -7.850 10.898 1.00 0.23 \ ATOM 30 O GLN D 4 8.458 -8.949 10.625 1.00 0.23 \ ATOM 31 CB GLN D 4 10.435 -6.513 9.408 1.00 0.23 \ ATOM 32 CG GLN D 4 9.981 -7.070 8.066 1.00 0.23 \ ATOM 33 CD GLN D 4 10.033 -6.040 6.956 1.00 0.23 \ ATOM 34 OE1 GLN D 4 9.119 -5.955 6.139 1.00 0.23 \ ATOM 35 NE2 GLN D 4 11.105 -5.258 6.915 1.00 0.23 \ ATOM 36 N HIS D 5 8.222 -6.918 11.534 1.00 -0.03 \ ATOM 37 CA HIS D 5 6.826 -7.171 11.869 1.00 -0.03 \ ATOM 38 C HIS D 5 5.927 -6.944 10.659 1.00 -0.03 \ ATOM 39 O HIS D 5 5.939 -5.871 10.064 1.00 -0.03 \ ATOM 40 CB HIS D 5 6.354 -6.307 13.051 1.00 -0.03 \ ATOM 41 CG HIS D 5 6.836 -6.786 14.387 1.00 -0.03 \ ATOM 42 ND1 HIS D 5 6.143 -7.707 15.146 1.00 -0.03 \ ATOM 43 CD2 HIS D 5 7.942 -6.467 15.102 1.00 -0.03 \ ATOM 44 CE1 HIS D 5 6.805 -7.937 16.266 1.00 -0.03 \ ATOM 45 NE2 HIS D 5 7.901 -7.198 16.264 1.00 -0.03 \ ATOM 46 N LEU D 6 5.130 -7.947 10.312 1.00 1.17 \ ATOM 47 CA LEU D 6 4.233 -7.843 9.159 1.00 1.17 \ ATOM 48 C LEU D 6 2.826 -8.175 9.567 1.00 1.17 \ ATOM 49 O LEU D 6 2.510 -9.329 9.881 1.00 1.17 \ ATOM 50 CB LEU D 6 4.661 -8.787 8.031 1.00 1.17 \ ATOM 51 CG LEU D 6 5.986 -8.492 7.362 1.00 1.17 \ ATOM 52 CD1 LEU D 6 6.445 -9.687 6.569 1.00 1.17 \ ATOM 53 CD2 LEU D 6 5.831 -7.270 6.488 1.00 1.17 \ ATOM 54 N CYS D 7 1.974 -7.161 9.546 1.00 1.69 \ ATOM 55 CA CYS D 7 0.608 -7.303 10.020 1.00 1.69 \ ATOM 56 C CYS D 7 -0.395 -6.874 8.957 1.00 1.69 \ ATOM 57 O CYS D 7 -0.102 -5.997 8.137 1.00 1.69 \ ATOM 58 CB CYS D 7 0.405 -6.472 11.286 1.00 1.69 \ ATOM 59 SG CYS D 7 1.603 -6.825 12.611 1.00 1.69 \ ATOM 60 N GLY D 8 -1.551 -7.535 8.956 1.00 0.76 \ ATOM 61 CA GLY D 8 -2.678 -7.136 8.134 1.00 0.76 \ ATOM 62 C GLY D 8 -2.389 -7.163 6.657 1.00 0.76 \ ATOM 63 O GLY D 8 -1.839 -8.138 6.137 1.00 0.76 \ ATOM 64 N SER D 9 -2.756 -6.086 5.969 1.00 -0.47 \ ATOM 65 CA SER D 9 -2.514 -6.009 4.542 1.00 -0.47 \ ATOM 66 C SER D 9 -1.037 -6.086 4.208 1.00 -0.47 \ ATOM 67 O SER D 9 -0.690 -6.540 3.126 1.00 -0.47 \ ATOM 68 CB SER D 9 -3.094 -4.728 3.958 1.00 -0.47 \ ATOM 69 OG SER D 9 -2.544 -3.617 4.623 1.00 -0.47 \ ATOM 70 N HIS D 10 -0.170 -5.609 5.107 1.00 -0.23 \ ATOM 71 CA HIS D 10 1.264 -5.676 4.860 1.00 -0.23 \ ATOM 72 C HIS D 10 1.760 -7.109 4.776 1.00 -0.23 \ ATOM 73 O HIS D 10 2.678 -7.410 4.012 1.00 -0.23 \ ATOM 74 CB HIS D 10 2.052 -4.928 5.929 1.00 -0.23 \ ATOM 75 CG HIS D 10 1.657 -3.494 6.069 1.00 -0.23 \ ATOM 76 ND1 HIS D 10 2.010 -2.535 5.143 1.00 -0.23 \ ATOM 77 CD2 HIS D 10 0.927 -2.857 7.013 1.00 -0.23 \ ATOM 78 CE1 HIS D 10 1.528 -1.365 5.520 1.00 -0.23 \ ATOM 79 NE2 HIS D 10 0.866 -1.532 6.649 1.00 -0.23 \ ATOM 80 N LEU D 11 1.171 -7.986 5.572 1.00 1.69 \ ATOM 81 CA LEU D 11 1.556 -9.395 5.551 1.00 1.69 \ ATOM 82 C LEU D 11 1.185 -10.037 4.215 1.00 1.69 \ ATOM 83 O LEU D 11 1.975 -10.799 3.635 1.00 1.69 \ ATOM 84 CB LEU D 11 0.892 -10.120 6.721 1.00 1.69 \ ATOM 85 CG LEU D 11 1.143 -11.613 6.898 1.00 1.69 \ ATOM 86 CD1 LEU D 11 2.628 -11.931 6.878 1.00 1.69 \ ATOM 87 CD2 LEU D 11 0.494 -12.091 8.191 1.00 1.69 \ ATOM 88 N VAL D 12 -0.010 -9.737 3.710 1.00 0.76 \ ATOM 89 CA VAL D 12 -0.393 -10.322 2.425 1.00 0.76 \ ATOM 90 C VAL D 12 0.365 -9.686 1.283 1.00 0.76 \ ATOM 91 O VAL D 12 0.638 -10.362 0.307 1.00 0.76 \ ATOM 92 CB VAL D 12 -1.915 -10.379 2.169 1.00 0.76 \ ATOM 93 CG1 VAL D 12 -2.563 -11.380 3.123 1.00 0.76 \ ATOM 94 CG2 VAL D 12 -2.547 -9.032 2.319 1.00 0.76 \ ATOM 95 N GLU D 13 0.736 -8.405 1.401 1.00 0.64 \ ATOM 96 CA GLU D 13 1.641 -7.804 0.403 1.00 0.64 \ ATOM 97 C GLU D 13 2.966 -8.592 0.333 1.00 0.64 \ ATOM 98 O GLU D 13 3.473 -8.889 -0.743 1.00 0.64 \ ATOM 99 CB GLU D 13 1.925 -6.331 0.721 1.00 0.64 \ ATOM 100 CG GLU D 13 0.751 -5.393 0.526 1.00 0.64 \ ATOM 101 CD GLU D 13 0.666 -4.853 -0.886 1.00 0.64 \ ATOM 102 OE1 GLU D 13 1.599 -5.146 -1.675 1.00 0.64 \ ATOM 103 OE2 GLU D 13 -0.318 -4.133 -1.200 1.00 0.64 \ ATOM 104 N ALA D 14 3.518 -8.937 1.487 1.00 0.02 \ ATOM 105 CA ALA D 14 4.769 -9.672 1.534 1.00 0.02 \ ATOM 106 C ALA D 14 4.608 -11.079 0.958 1.00 0.02 \ ATOM 107 O ALA D 14 5.477 -11.558 0.227 1.00 0.02 \ ATOM 108 CB ALA D 14 5.303 -9.721 2.964 1.00 0.02 \ ATOM 109 N LEU D 15 3.508 -11.739 1.307 1.00 1.69 \ ATOM 110 CA LEU D 15 3.148 -13.037 0.726 1.00 1.69 \ ATOM 111 C LEU D 15 3.086 -12.985 -0.795 1.00 1.69 \ ATOM 112 O LEU D 15 3.593 -13.883 -1.466 1.00 1.69 \ ATOM 113 CB LEU D 15 1.802 -13.538 1.270 1.00 1.69 \ ATOM 114 CG LEU D 15 1.784 -14.187 2.653 1.00 1.69 \ ATOM 115 CD1 LEU D 15 0.365 -14.581 3.044 1.00 1.69 \ ATOM 116 CD2 LEU D 15 2.724 -15.385 2.717 1.00 1.69 \ ATOM 117 N TYR D 16 2.460 -11.945 -1.340 1.00 -0.21 \ ATOM 118 CA TYR D 16 2.402 -11.771 -2.790 1.00 -0.21 \ ATOM 119 C TYR D 16 3.800 -11.646 -3.394 1.00 -0.21 \ ATOM 120 O TYR D 16 4.095 -12.220 -4.445 1.00 -0.21 \ ATOM 121 CB TYR D 16 1.554 -10.548 -3.175 1.00 -0.21 \ ATOM 122 CG TYR D 16 1.533 -10.286 -4.662 1.00 -0.21 \ ATOM 123 CD1 TYR D 16 2.339 -9.304 -5.234 1.00 -0.21 \ ATOM 124 CD2 TYR D 16 0.727 -11.041 -5.506 1.00 -0.21 \ ATOM 125 CE1 TYR D 16 2.333 -9.084 -6.605 1.00 -0.21 \ ATOM 126 CE2 TYR D 16 0.699 -10.812 -6.873 1.00 -0.21 \ ATOM 127 CZ TYR D 16 1.508 -9.841 -7.419 1.00 -0.21 \ ATOM 128 OH TYR D 16 1.483 -9.634 -8.781 1.00 -0.21 \ ATOM 129 N LEU D 17 4.667 -10.905 -2.726 1.00 -0.24 \ ATOM 130 CA LEU D 17 5.990 -10.641 -3.271 1.00 -0.24 \ ATOM 131 C LEU D 17 6.807 -11.897 -3.267 1.00 -0.24 \ ATOM 132 O LEU D 17 7.509 -12.220 -4.222 1.00 -0.24 \ ATOM 133 CB LEU D 17 6.698 -9.611 -2.408 1.00 -0.24 \ ATOM 134 CG LEU D 17 7.591 -8.619 -3.120 1.00 -0.24 \ ATOM 135 CD1 LEU D 17 6.907 -8.143 -4.377 1.00 -0.24 \ ATOM 136 CD2 LEU D 17 7.791 -7.468 -2.177 1.00 -0.24 \ ATOM 137 N VAL D 18 6.727 -12.613 -2.163 1.00 0.30 \ ATOM 138 CA VAL D 18 7.527 -13.806 -2.006 1.00 0.30 \ ATOM 139 C VAL D 18 7.019 -14.937 -2.896 1.00 0.30 \ ATOM 140 O VAL D 18 7.809 -15.633 -3.537 1.00 0.30 \ ATOM 141 CB VAL D 18 7.559 -14.236 -0.532 1.00 0.30 \ ATOM 142 CG1 VAL D 18 8.137 -15.620 -0.399 1.00 0.30 \ ATOM 143 CG2 VAL D 18 8.379 -13.234 0.283 1.00 0.30 \ ATOM 144 N CYS D 19 5.702 -15.104 -2.966 1.00 1.69 \ ATOM 145 CA CYS D 19 5.117 -16.266 -3.638 1.00 1.69 \ ATOM 146 C CYS D 19 4.904 -16.059 -5.127 1.00 1.69 \ ATOM 147 O CYS D 19 5.118 -16.976 -5.913 1.00 1.69 \ ATOM 148 CB CYS D 19 3.794 -16.659 -2.984 1.00 1.69 \ ATOM 149 SG CYS D 19 4.003 -17.138 -1.267 1.00 1.69 \ ATOM 150 N GLY D 20 4.452 -14.866 -5.501 1.00 -0.12 \ ATOM 151 CA GLY D 20 4.290 -14.501 -6.900 1.00 -0.12 \ ATOM 152 C GLY D 20 3.319 -15.388 -7.643 1.00 -0.12 \ ATOM 153 O GLY D 20 2.170 -15.562 -7.221 1.00 -0.12 \ ATOM 154 N GLU D 21 3.787 -15.974 -8.740 1.00 0.18 \ ATOM 155 CA GLU D 21 2.913 -16.768 -9.601 1.00 0.18 \ ATOM 156 C GLU D 21 2.433 -18.057 -8.936 1.00 0.18 \ ATOM 157 O GLU D 21 1.402 -18.601 -9.323 1.00 0.18 \ ATOM 158 CB GLU D 21 3.591 -17.072 -10.943 1.00 0.18 \ ATOM 159 CG GLU D 21 4.872 -17.887 -10.844 1.00 0.18 \ ATOM 160 CD GLU D 21 5.942 -17.411 -11.815 1.00 0.18 \ ATOM 161 OE1 GLU D 21 5.862 -16.248 -12.261 1.00 0.18 \ ATOM 162 OE2 GLU D 21 6.871 -18.189 -12.123 1.00 0.18 \ ATOM 163 N ARG D 22 3.171 -18.530 -7.934 1.00 -0.58 \ ATOM 164 CA ARG D 22 2.803 -19.743 -7.200 1.00 -0.58 \ ATOM 165 C ARG D 22 1.483 -19.560 -6.451 1.00 -0.58 \ ATOM 166 O ARG D 22 0.765 -20.525 -6.181 1.00 -0.58 \ ATOM 167 CB ARG D 22 3.893 -20.119 -6.199 1.00 -0.58 \ ATOM 168 CG ARG D 22 5.273 -20.341 -6.791 1.00 -0.58 \ ATOM 169 CD ARG D 22 6.327 -20.385 -5.686 1.00 -0.58 \ ATOM 170 NE ARG D 22 6.052 -21.461 -4.741 1.00 -0.58 \ ATOM 171 CZ ARG D 22 6.746 -21.696 -3.628 1.00 -0.58 \ ATOM 172 NH1 ARG D 22 7.778 -20.921 -3.292 1.00 -0.58 \ ATOM 173 NH2 ARG D 22 6.394 -22.709 -2.840 1.00 -0.58 \ ATOM 174 N GLY D 23 1.177 -18.313 -6.115 1.00 1.69 \ ATOM 175 CA GLY D 23 0.006 -17.989 -5.323 1.00 1.69 \ ATOM 176 C GLY D 23 0.233 -18.355 -3.878 1.00 1.69 \ ATOM 177 O GLY D 23 1.218 -19.001 -3.536 1.00 1.69 \ ATOM 178 N PHE D 24 -0.686 -17.967 -3.008 1.00 1.16 \ ATOM 179 CA PHE D 24 -0.510 -18.258 -1.594 1.00 1.16 \ ATOM 180 C PHE D 24 -1.862 -18.394 -0.905 1.00 1.16 \ ATOM 181 O PHE D 24 -2.916 -18.138 -1.511 1.00 1.16 \ ATOM 182 CB PHE D 24 0.327 -17.161 -0.944 1.00 1.16 \ ATOM 183 CG PHE D 24 -0.330 -15.814 -0.982 1.00 1.16 \ ATOM 184 CD1 PHE D 24 -0.055 -14.923 -1.998 1.00 1.16 \ ATOM 185 CD2 PHE D 24 -1.253 -15.451 -0.018 1.00 1.16 \ ATOM 186 CE1 PHE D 24 -0.676 -13.680 -2.044 1.00 1.16 \ ATOM 187 CE2 PHE D 24 -1.882 -14.210 -0.059 1.00 1.16 \ ATOM 188 CZ PHE D 24 -1.597 -13.328 -1.076 1.00 1.16 \ ATOM 189 N PHE D 25 -1.828 -18.826 0.351 1.00 0.51 \ ATOM 190 CA PHE D 25 -3.016 -18.810 1.194 1.00 0.51 \ ATOM 191 C PHE D 25 -2.769 -17.942 2.417 1.00 0.51 \ ATOM 192 O PHE D 25 -1.702 -17.981 3.015 1.00 0.51 \ ATOM 193 CB PHE D 25 -3.462 -20.228 1.588 1.00 0.51 \ ATOM 194 CG PHE D 25 -2.408 -21.029 2.311 1.00 0.51 \ ATOM 195 CD1 PHE D 25 -2.420 -21.130 3.689 1.00 0.51 \ ATOM 196 CD2 PHE D 25 -1.418 -21.687 1.608 1.00 0.51 \ ATOM 197 CE1 PHE D 25 -1.466 -21.846 4.348 1.00 0.51 \ ATOM 198 CE2 PHE D 25 -0.458 -22.396 2.264 1.00 0.51 \ ATOM 199 CZ PHE D 25 -0.485 -22.485 3.637 1.00 0.51 \ ATOM 200 N TYR D 26 -3.756 -17.125 2.748 1.00 -0.23 \ ATOM 201 CA TYR D 26 -3.710 -16.315 3.943 1.00 -0.23 \ ATOM 202 C TYR D 26 -4.808 -16.836 4.844 1.00 -0.23 \ ATOM 203 O TYR D 26 -5.986 -16.658 4.560 1.00 -0.23 \ ATOM 204 CB TYR D 26 -3.953 -14.840 3.599 1.00 -0.23 \ ATOM 205 CG TYR D 26 -4.086 -13.968 4.827 1.00 -0.23 \ ATOM 206 CD1 TYR D 26 -3.013 -13.790 5.689 1.00 -0.23 \ ATOM 207 CD2 TYR D 26 -5.289 -13.353 5.143 1.00 -0.23 \ ATOM 208 CE1 TYR D 26 -3.127 -13.003 6.822 1.00 -0.23 \ ATOM 209 CE2 TYR D 26 -5.410 -12.571 6.281 1.00 -0.23 \ ATOM 210 CZ TYR D 26 -4.324 -12.398 7.107 1.00 -0.23 \ ATOM 211 OH TYR D 26 -4.443 -11.628 8.247 1.00 -0.23 \ ATOM 212 N THR D 27 -4.427 -17.516 5.913 1.00 -0.98 \ ATOM 213 CA THR D 27 -5.399 -18.143 6.797 1.00 -0.98 \ ATOM 214 C THR D 27 -5.067 -17.831 8.249 1.00 -0.98 \ ATOM 215 O THR D 27 -4.428 -18.624 8.934 1.00 -0.98 \ ATOM 216 CB THR D 27 -5.492 -19.677 6.555 1.00 -0.98 \ ATOM 217 OG1 THR D 27 -4.212 -20.281 6.749 1.00 -0.98 \ ATOM 218 CG2 THR D 27 -5.930 -19.957 5.137 1.00 -0.98 \ ATOM 219 N PRO D 28 -5.500 -16.655 8.721 1.00 -0.78 \ ATOM 220 CA PRO D 28 -5.122 -16.193 10.061 1.00 -0.78 \ ATOM 221 C PRO D 28 -5.643 -17.078 11.199 1.00 -0.78 \ ATOM 222 O PRO D 28 -5.011 -17.096 12.254 1.00 -0.78 \ ATOM 223 CB PRO D 28 -5.731 -14.786 10.138 1.00 -0.78 \ ATOM 224 CG PRO D 28 -6.773 -14.741 9.056 1.00 -0.78 \ ATOM 225 CD PRO D 28 -6.295 -15.657 7.985 1.00 -0.78 \ ATOM 226 N LYS D 29 -6.744 -17.804 10.988 1.00 -0.90 \ ATOM 227 CA LYS D 29 -7.316 -18.653 12.036 1.00 -0.90 \ ATOM 228 C LYS D 29 -6.501 -19.924 12.257 1.00 -0.90 \ ATOM 229 O LYS D 29 -6.641 -20.598 13.277 1.00 -0.90 \ ATOM 230 CB LYS D 29 -8.762 -19.026 11.697 1.00 -0.90 \ ATOM 231 CG LYS D 29 -9.713 -17.838 11.671 1.00 -0.90 \ ATOM 232 CD LYS D 29 -11.129 -18.232 11.261 1.00 -0.90 \ ATOM 233 CE LYS D 29 -12.045 -17.010 11.243 1.00 -0.90 \ ATOM 234 NZ LYS D 29 -13.403 -17.324 10.725 1.00 -0.90 \ ATOM 235 N ALA D 30 -5.654 -20.252 11.290 1.00 -1.45 \ ATOM 236 CA ALA D 30 -4.929 -21.513 11.294 1.00 -1.45 \ ATOM 237 C ALA D 30 -3.828 -21.478 12.330 1.00 -1.45 \ ATOM 238 O ALA D 30 -3.288 -20.411 12.635 1.00 -1.45 \ ATOM 239 CB ALA D 30 -4.353 -21.801 9.902 1.00 -1.45 \ ATOM 240 OXT ALA D 30 -3.464 -22.516 12.884 1.00 -1.45 \ """, "e4m4fD1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e4m4fD1_csv", state=0, origin=1) cmd.zoom("e4m4fD1_csv", animate=-1)