cmd.read_pdbstr("""\ ATOM 1 N PHE D 1 -18.862 10.257 -14.434 1.00 -1.00 \ ATOM 2 CA PHE D 1 -17.912 9.298 -14.993 1.00 -1.00 \ ATOM 3 C PHE D 1 -17.794 9.442 -16.518 1.00 -1.00 \ ATOM 4 O PHE D 1 -18.709 9.938 -17.180 1.00 -1.00 \ ATOM 5 CB PHE D 1 -18.299 7.863 -14.614 1.00 -1.00 \ ATOM 6 CG PHE D 1 -18.545 7.664 -13.130 1.00 -1.00 \ ATOM 7 CD1 PHE D 1 -17.638 8.131 -12.175 1.00 -1.00 \ ATOM 8 CD2 PHE D 1 -19.692 7.017 -12.695 1.00 -1.00 \ ATOM 9 CE1 PHE D 1 -17.876 7.944 -10.796 1.00 -1.00 \ ATOM 10 CE2 PHE D 1 -19.943 6.829 -11.333 1.00 -1.00 \ ATOM 11 CZ PHE D 1 -19.033 7.291 -10.382 1.00 -1.00 \ ATOM 12 N VAL D 2 -16.652 9.022 -17.059 1.00 -1.00 \ ATOM 13 CA VAL D 2 -16.412 9.031 -18.502 1.00 -1.00 \ ATOM 14 C VAL D 2 -16.021 7.626 -18.973 1.00 -1.00 \ ATOM 15 O VAL D 2 -15.599 6.786 -18.165 1.00 -1.00 \ ATOM 16 CB VAL D 2 -15.275 10.002 -18.878 1.00 -1.00 \ ATOM 17 CG1 VAL D 2 -15.442 11.337 -18.159 1.00 -1.00 \ ATOM 18 CG2 VAL D 2 -13.918 9.388 -18.553 1.00 -1.00 \ ATOM 19 N ASN D 3 -16.175 7.365 -20.271 1.00 -0.48 \ ATOM 20 CA ASN D 3 -15.653 6.142 -20.874 1.00 -0.48 \ ATOM 21 C ASN D 3 -14.158 6.280 -21.107 1.00 -0.48 \ ATOM 22 O ASN D 3 -13.667 7.398 -21.280 1.00 -0.48 \ ATOM 23 CB ASN D 3 -16.306 5.881 -22.231 1.00 -0.48 \ ATOM 24 CG ASN D 3 -17.805 6.041 -22.202 1.00 -0.48 \ ATOM 25 OD1 ASN D 3 -18.477 5.601 -21.267 1.00 -0.48 \ ATOM 26 ND2 ASN D 3 -18.345 6.671 -23.238 1.00 -0.48 \ ATOM 27 N GLN D 4 -13.436 5.159 -21.131 1.00 0.23 \ ATOM 28 CA GLN D 4 -12.029 5.169 -21.575 1.00 0.23 \ ATOM 29 C GLN D 4 -11.508 3.767 -21.861 1.00 0.23 \ ATOM 30 O GLN D 4 -12.177 2.776 -21.544 1.00 0.23 \ ATOM 31 CB GLN D 4 -11.116 5.872 -20.569 1.00 0.23 \ ATOM 32 CG GLN D 4 -11.084 5.238 -19.182 1.00 0.23 \ ATOM 33 CD GLN D 4 -10.280 6.070 -18.211 1.00 0.23 \ ATOM 34 OE1 GLN D 4 -10.814 6.616 -17.243 1.00 0.23 \ ATOM 35 NE2 GLN D 4 -8.990 6.188 -18.474 1.00 0.23 \ ATOM 36 N HIS D 5 -10.326 3.689 -22.476 1.00 -0.03 \ ATOM 37 CA HIS D 5 -9.736 2.403 -22.817 1.00 -0.03 \ ATOM 38 C HIS D 5 -9.096 1.765 -21.592 1.00 -0.03 \ ATOM 39 O HIS D 5 -8.233 2.368 -20.962 1.00 -0.03 \ ATOM 40 CB HIS D 5 -8.707 2.551 -23.946 1.00 -0.03 \ ATOM 41 CG HIS D 5 -9.320 2.761 -25.299 1.00 -0.03 \ ATOM 42 ND1 HIS D 5 -9.825 1.725 -26.056 1.00 -0.03 \ ATOM 43 CD2 HIS D 5 -9.510 3.889 -26.029 1.00 -0.03 \ ATOM 44 CE1 HIS D 5 -10.302 2.205 -27.194 1.00 -0.03 \ ATOM 45 NE2 HIS D 5 -10.123 3.514 -27.203 1.00 -0.03 \ ATOM 46 N LEU D 6 -9.522 0.550 -21.262 1.00 1.17 \ ATOM 47 CA LEU D 6 -8.992 -0.157 -20.093 1.00 1.17 \ ATOM 48 C LEU D 6 -8.582 -1.552 -20.511 1.00 1.17 \ ATOM 49 O LEU D 6 -9.437 -2.386 -20.837 1.00 1.17 \ ATOM 50 CB LEU D 6 -10.039 -0.236 -18.975 1.00 1.17 \ ATOM 51 CG LEU D 6 -10.476 1.092 -18.358 1.00 1.17 \ ATOM 52 CD1 LEU D 6 -11.718 0.929 -17.505 1.00 1.17 \ ATOM 53 CD2 LEU D 6 -9.342 1.698 -17.539 1.00 1.17 \ ATOM 54 N CYS D 7 -7.275 -1.812 -20.512 1.00 1.69 \ ATOM 55 CA CYS D 7 -6.760 -3.105 -20.970 1.00 1.69 \ ATOM 56 C CYS D 7 -5.894 -3.789 -19.921 1.00 1.69 \ ATOM 57 O CYS D 7 -5.220 -3.125 -19.120 1.00 1.69 \ ATOM 58 CB CYS D 7 -5.935 -2.930 -22.248 1.00 1.69 \ ATOM 59 SG CYS D 7 -6.787 -1.995 -23.549 1.00 1.69 \ ATOM 60 N GLY D 8 -5.914 -5.118 -19.926 1.00 0.76 \ ATOM 61 CA GLY D 8 -5.001 -5.896 -19.101 1.00 0.76 \ ATOM 62 C GLY D 8 -5.069 -5.588 -17.625 1.00 0.76 \ ATOM 63 O GLY D 8 -6.155 -5.573 -17.021 1.00 0.76 \ ATOM 64 N SER D 9 -3.918 -5.331 -17.015 1.00 -0.47 \ ATOM 65 CA SER D 9 -3.936 -5.130 -15.578 1.00 -0.47 \ ATOM 66 C SER D 9 -4.716 -3.863 -15.226 1.00 -0.47 \ ATOM 67 O SER D 9 -5.225 -3.753 -14.112 1.00 -0.47 \ ATOM 68 CB SER D 9 -2.528 -5.083 -15.008 1.00 -0.47 \ ATOM 69 OG SER D 9 -1.834 -4.025 -15.611 1.00 -0.47 \ ATOM 70 N HIS D 10 -4.826 -2.911 -16.164 1.00 -0.23 \ ATOM 71 CA HIS D 10 -5.561 -1.682 -15.878 1.00 -0.23 \ ATOM 72 C HIS D 10 -7.052 -1.950 -15.782 1.00 -0.23 \ ATOM 73 O HIS D 10 -7.777 -1.274 -15.038 1.00 -0.23 \ ATOM 74 CB HIS D 10 -5.284 -0.591 -16.922 1.00 -0.23 \ ATOM 75 CG HIS D 10 -3.842 -0.200 -17.009 1.00 -0.23 \ ATOM 76 ND1 HIS D 10 -3.227 0.588 -16.062 1.00 -0.23 \ ATOM 77 CD2 HIS D 10 -2.885 -0.525 -17.909 1.00 -0.23 \ ATOM 78 CE1 HIS D 10 -1.959 0.755 -16.387 1.00 -0.23 \ ATOM 79 NE2 HIS D 10 -1.725 0.086 -17.502 1.00 -0.23 \ ATOM 80 N LEU D 11 -7.512 -2.927 -16.541 1.00 1.69 \ ATOM 81 CA LEU D 11 -8.928 -3.273 -16.546 1.00 1.69 \ ATOM 82 C LEU D 11 -9.272 -3.935 -15.217 1.00 1.69 \ ATOM 83 O LEU D 11 -10.311 -3.636 -14.602 1.00 1.69 \ ATOM 84 CB LEU D 11 -9.205 -4.197 -17.731 1.00 1.69 \ ATOM 85 CG LEU D 11 -10.613 -4.728 -18.013 1.00 1.69 \ ATOM 86 CD1 LEU D 11 -11.670 -3.632 -17.942 1.00 1.69 \ ATOM 87 CD2 LEU D 11 -10.609 -5.379 -19.391 1.00 1.69 \ ATOM 88 N VAL D 12 -8.401 -4.811 -14.732 1.00 0.76 \ ATOM 89 CA VAL D 12 -8.644 -5.463 -13.441 0.60 0.76 \ ATOM 90 C VAL D 12 -8.610 -4.458 -12.283 1.00 0.76 \ ATOM 91 O VAL D 12 -9.386 -4.568 -11.315 1.00 0.76 \ ATOM 92 CB VAL D 12 -7.678 -6.647 -13.215 0.60 0.76 \ ATOM 93 CG1 VAL D 12 -7.650 -7.068 -11.764 0.60 0.76 \ ATOM 94 CG2 VAL D 12 -8.091 -7.826 -14.089 0.60 0.76 \ ATOM 95 N GLU D 13 -7.718 -3.465 -12.372 1.00 0.64 \ ATOM 96 CA GLU D 13 -7.672 -2.433 -11.315 1.00 0.64 \ ATOM 97 C GLU D 13 -9.012 -1.689 -11.261 1.00 0.64 \ ATOM 98 O GLU D 13 -9.527 -1.375 -10.187 1.00 0.64 \ ATOM 99 CB GLU D 13 -6.561 -1.423 -11.590 1.00 0.64 \ ATOM 100 CG GLU D 13 -5.155 -1.960 -11.401 1.00 0.64 \ ATOM 101 CD GLU D 13 -4.628 -1.719 -10.000 1.00 0.64 \ ATOM 102 OE1 GLU D 13 -5.323 -1.020 -9.223 1.00 0.64 \ ATOM 103 OE2 GLU D 13 -3.521 -2.220 -9.684 1.00 0.64 \ ATOM 104 N ALA D 14 -9.555 -1.396 -12.436 1.00 0.02 \ ATOM 105 CA ALA D 14 -10.820 -0.666 -12.552 1.00 0.02 \ ATOM 106 C ALA D 14 -11.946 -1.510 -11.976 1.00 0.02 \ ATOM 107 O ALA D 14 -12.824 -0.999 -11.271 1.00 0.02 \ ATOM 108 CB ALA D 14 -11.094 -0.324 -14.019 1.00 0.02 \ ATOM 109 N LEU D 15 -11.920 -2.804 -12.283 1.00 1.69 \ ATOM 110 CA LEU D 15 -12.872 -3.747 -11.688 1.00 1.69 \ ATOM 111 C LEU D 15 -12.770 -3.779 -10.156 1.00 1.69 \ ATOM 112 O LEU D 15 -13.788 -3.761 -9.469 1.00 1.69 \ ATOM 113 CB LEU D 15 -12.691 -5.158 -12.279 1.00 1.69 \ ATOM 114 CG LEU D 15 -13.207 -5.422 -13.702 1.00 1.69 \ ATOM 115 CD1 LEU D 15 -12.768 -6.810 -14.208 1.00 1.69 \ ATOM 116 CD2 LEU D 15 -14.719 -5.291 -13.798 1.00 1.69 \ ATOM 117 N TYR D 16 -11.551 -3.809 -9.621 1.00 -0.21 \ ATOM 118 CA TYR D 16 -11.366 -3.785 -8.169 1.00 -0.21 \ ATOM 119 C TYR D 16 -11.990 -2.534 -7.556 1.00 -0.21 \ ATOM 120 O TYR D 16 -12.641 -2.587 -6.512 1.00 -0.21 \ ATOM 121 CB TYR D 16 -9.868 -3.876 -7.813 1.00 -0.21 \ ATOM 122 CG TYR D 16 -9.624 -3.725 -6.327 1.00 -0.21 \ ATOM 123 CD1 TYR D 16 -9.845 -4.789 -5.455 1.00 -0.21 \ ATOM 124 CD2 TYR D 16 -9.208 -2.511 -5.792 1.00 -0.21 \ ATOM 125 CE1 TYR D 16 -9.636 -4.644 -4.089 1.00 -0.21 \ ATOM 126 CE2 TYR D 16 -9.005 -2.360 -4.438 1.00 -0.21 \ ATOM 127 CZ TYR D 16 -9.223 -3.427 -3.594 1.00 -0.21 \ ATOM 128 OH TYR D 16 -9.013 -3.276 -2.241 1.00 -0.21 \ ATOM 129 N LEU D 17 -11.794 -1.402 -8.214 1.00 -0.24 \ ATOM 130 CA LEU D 17 -12.251 -0.121 -7.687 1.00 -0.24 \ ATOM 131 C LEU D 17 -13.765 -0.076 -7.676 1.00 -0.24 \ ATOM 132 O LEU D 17 -14.394 0.284 -6.675 1.00 -0.24 \ ATOM 133 CB LEU D 17 -11.712 1.013 -8.567 1.00 -0.24 \ ATOM 134 CG LEU D 17 -10.935 2.138 -7.878 1.00 -0.24 \ ATOM 135 CD1 LEU D 17 -10.383 1.695 -6.535 1.00 -0.24 \ ATOM 136 CD2 LEU D 17 -9.803 2.607 -8.778 1.00 -0.24 \ ATOM 137 N VAL D 18 -14.346 -0.446 -8.808 1.00 0.30 \ ATOM 138 CA VAL D 18 -15.793 -0.396 -8.992 1.00 0.30 \ ATOM 139 C VAL D 18 -16.536 -1.423 -8.127 1.00 0.30 \ ATOM 140 O VAL D 18 -17.585 -1.115 -7.534 1.00 0.30 \ ATOM 141 CB VAL D 18 -16.147 -0.605 -10.487 1.00 0.30 \ ATOM 142 CG1 VAL D 18 -17.627 -0.822 -10.656 1.00 0.30 \ ATOM 143 CG2 VAL D 18 -15.684 0.596 -11.317 1.00 0.30 \ ATOM 144 N CYS D 19 -15.995 -2.637 -8.031 1.00 1.69 \ ATOM 145 CA CYS D 19 -16.728 -3.718 -7.361 1.00 1.69 \ ATOM 146 C CYS D 19 -16.422 -3.826 -5.876 1.00 1.69 \ ATOM 147 O CYS D 19 -17.288 -4.235 -5.094 1.00 1.69 \ ATOM 148 CB CYS D 19 -16.451 -5.073 -8.014 1.00 1.69 \ ATOM 149 SG CYS D 19 -16.864 -5.135 -9.791 1.00 1.69 \ ATOM 150 N GLY D 20 -15.185 -3.500 -5.505 1.00 -0.12 \ ATOM 151 CA GLY D 20 -14.745 -3.562 -4.119 1.00 -0.12 \ ATOM 152 C GLY D 20 -15.000 -4.894 -3.441 1.00 -0.12 \ ATOM 153 O GLY D 20 -14.572 -5.947 -3.926 1.00 -0.12 \ ATOM 154 N GLU D 21 -15.713 -4.848 -2.320 1.00 0.18 \ ATOM 155 CA GLU D 21 -15.944 -6.038 -1.500 1.00 0.18 \ ATOM 156 C GLU D 21 -16.904 -7.056 -2.136 1.00 0.18 \ ATOM 157 O GLU D 21 -16.972 -8.200 -1.692 1.00 0.18 \ ATOM 158 CB GLU D 21 -16.406 -5.651 -0.082 1.00 0.18 \ ATOM 159 CG GLU D 21 -17.632 -4.732 -0.011 1.00 0.18 \ ATOM 160 CD GLU D 21 -17.314 -3.257 -0.288 1.00 0.18 \ ATOM 161 OE1 GLU D 21 -16.295 -2.965 -0.962 1.00 0.18 \ ATOM 162 OE2 GLU D 21 -18.093 -2.388 0.171 1.00 0.18 \ ATOM 163 N ARG D 22 -17.628 -6.643 -3.175 1.00 -0.58 \ ATOM 164 CA ARG D 22 -18.492 -7.554 -3.929 1.00 -0.58 \ ATOM 165 C ARG D 22 -17.647 -8.601 -4.645 1.00 -0.58 \ ATOM 166 O ARG D 22 -18.101 -9.714 -4.912 1.00 -0.58 \ ATOM 167 CB ARG D 22 -19.321 -6.791 -4.966 1.00 -0.58 \ ATOM 168 CG ARG D 22 -20.396 -5.840 -4.397 1.00 -0.58 \ ATOM 169 CD ARG D 22 -20.513 -4.547 -5.228 1.00 -0.58 \ ATOM 170 NE ARG D 22 -21.428 -4.632 -6.375 1.00 -0.58 \ ATOM 171 CZ ARG D 22 -21.503 -3.716 -7.346 1.00 -0.58 \ ATOM 172 NH1 ARG D 22 -20.701 -2.649 -7.329 1.00 -0.58 \ ATOM 173 NH2 ARG D 22 -22.363 -3.864 -8.348 1.00 -0.58 \ ATOM 174 N GLY D 23 -16.413 -8.229 -4.965 1.00 1.69 \ ATOM 175 CA GLY D 23 -15.551 -9.071 -5.773 1.00 1.69 \ ATOM 176 C GLY D 23 -16.011 -9.000 -7.212 1.00 1.69 \ ATOM 177 O GLY D 23 -17.056 -8.404 -7.505 1.00 1.69 \ ATOM 178 N PHE D 24 -15.251 -9.619 -8.110 1.00 1.16 \ ATOM 179 CA PHE D 24 -15.566 -9.576 -9.534 1.00 1.16 \ ATOM 180 C PHE D 24 -14.985 -10.799 -10.221 1.00 1.16 \ ATOM 181 O PHE D 24 -14.263 -11.587 -9.603 1.00 1.16 \ ATOM 182 CB PHE D 24 -15.010 -8.298 -10.154 1.00 1.16 \ ATOM 183 CG PHE D 24 -13.511 -8.194 -10.090 1.00 1.16 \ ATOM 184 CD1 PHE D 24 -12.723 -8.716 -11.106 1.00 1.16 \ ATOM 185 CD2 PHE D 24 -12.891 -7.578 -9.014 1.00 1.16 \ ATOM 186 CE1 PHE D 24 -11.316 -8.622 -11.050 1.00 1.16 \ ATOM 187 CE2 PHE D 24 -11.502 -7.487 -8.943 1.00 1.16 \ ATOM 188 CZ PHE D 24 -10.719 -8.008 -9.963 1.00 1.16 \ ATOM 189 N PHE D 25 -15.309 -10.968 -11.495 1.00 0.51 \ ATOM 190 CA PHE D 25 -14.666 -12.004 -12.300 1.00 0.51 \ ATOM 191 C PHE D 25 -14.071 -11.333 -13.506 1.00 0.51 \ ATOM 192 O PHE D 25 -14.707 -10.460 -14.098 1.00 0.51 \ ATOM 193 CB PHE D 25 -15.662 -13.091 -12.729 1.00 0.51 \ ATOM 194 CG PHE D 25 -16.889 -12.551 -13.398 1.00 0.51 \ ATOM 195 CD1 PHE D 25 -17.932 -12.038 -12.638 1.00 0.51 \ ATOM 196 CD2 PHE D 25 -17.003 -12.555 -14.786 1.00 0.51 \ ATOM 197 CE1 PHE D 25 -19.056 -11.526 -13.244 1.00 0.51 \ ATOM 198 CE2 PHE D 25 -18.137 -12.053 -15.402 1.00 0.51 \ ATOM 199 CZ PHE D 25 -19.166 -11.540 -14.630 1.00 0.51 \ ATOM 200 N TYR D 26 -12.836 -11.710 -13.837 1.00 -0.23 \ ATOM 201 CA TYR D 26 -12.198 -11.268 -15.067 1.00 -0.23 \ ATOM 202 C TYR D 26 -12.098 -12.469 -15.993 1.00 -0.23 \ ATOM 203 O TYR D 26 -11.339 -13.390 -15.720 1.00 -0.23 \ ATOM 204 CB TYR D 26 -10.802 -10.724 -14.759 1.00 -0.23 \ ATOM 205 CG TYR D 26 -9.999 -10.389 -15.991 1.00 -0.23 \ ATOM 206 CD1 TYR D 26 -10.440 -9.415 -16.875 1.00 -0.23 \ ATOM 207 CD2 TYR D 26 -8.804 -11.041 -16.269 1.00 -0.23 \ ATOM 208 CE1 TYR D 26 -9.714 -9.093 -18.009 1.00 -0.23 \ ATOM 209 CE2 TYR D 26 -8.075 -10.734 -17.409 1.00 -0.23 \ ATOM 210 CZ TYR D 26 -8.533 -9.757 -18.265 1.00 -0.23 \ ATOM 211 OH TYR D 26 -7.823 -9.434 -19.404 1.00 -0.23 \ ATOM 212 N THR D 27 -12.890 -12.483 -17.060 1.00 -0.98 \ ATOM 213 CA THR D 27 -12.936 -13.625 -17.972 1.00 -0.98 \ ATOM 214 C THR D 27 -12.861 -13.150 -19.424 1.00 -0.98 \ ATOM 215 O THR D 27 -13.877 -13.027 -20.115 1.00 -0.98 \ ATOM 216 CB THR D 27 -14.193 -14.528 -17.745 1.00 -0.98 \ ATOM 217 OG1 THR D 27 -15.384 -13.739 -17.809 1.00 -0.98 \ ATOM 218 CG2 THR D 27 -14.140 -15.193 -16.383 1.00 -0.98 \ ATOM 219 N PRO D 28 -11.636 -12.886 -19.892 1.00 -0.78 \ ATOM 220 CA PRO D 28 -11.410 -12.275 -21.209 1.00 -0.78 \ ATOM 221 C PRO D 28 -11.883 -13.157 -22.362 1.00 -0.78 \ ATOM 222 O PRO D 28 -12.179 -12.637 -23.443 1.00 -0.78 \ ATOM 223 CB PRO D 28 -9.889 -12.096 -21.257 1.00 -0.78 \ ATOM 224 CG PRO D 28 -9.334 -13.053 -20.226 1.00 -0.78 \ ATOM 225 CD PRO D 28 -10.381 -13.141 -19.158 1.00 -0.78 \ ATOM 226 N LYS D 29 -11.966 -14.467 -22.128 1.00 -0.90 \ ATOM 227 CA LYS D 29 -12.389 -15.407 -23.162 1.00 -0.90 \ ATOM 228 C LYS D 29 -13.885 -15.343 -23.447 1.00 -0.90 \ ATOM 229 O LYS D 29 -14.342 -15.809 -24.482 1.00 -0.90 \ ATOM 230 CB LYS D 29 -11.999 -16.841 -22.786 1.00 -0.90 \ ATOM 231 CG LYS D 29 -10.491 -17.089 -22.736 1.00 -0.90 \ ATOM 232 CD LYS D 29 -10.176 -18.531 -22.331 1.00 -0.90 \ ATOM 233 CE LYS D 29 -8.673 -18.810 -22.380 1.00 -0.90 \ ATOM 234 NZ LYS D 29 -8.348 -20.229 -22.032 1.00 -0.90 \ ATOM 235 N ALA D 30 -14.657 -14.773 -22.533 1.00 -1.45 \ ATOM 236 CA ALA D 30 -16.104 -14.775 -22.705 1.00 -1.45 \ ATOM 237 C ALA D 30 -16.532 -13.718 -23.712 1.00 -1.45 \ ATOM 238 O ALA D 30 -15.862 -12.699 -23.887 1.00 -1.45 \ ATOM 239 CB ALA D 30 -16.798 -14.575 -21.372 1.00 -1.45 \ ATOM 240 OXT ALA D 30 -17.553 -13.861 -24.388 1.00 -1.45 \ """, "e4m4jD1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e4m4jD1_csv", state=0, origin=1) cmd.zoom("e4m4jD1_csv", animate=-1)